Wall clock time and date at job start Mon Mar 30 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48497 * 109.47035 * 274.98491 * 3 2 1 5 5 H 1.48501 * 109.46955 * 34.98210 * 3 2 1 6 6 H 1.48499 * 109.47183 * 154.98198 * 3 2 1 7 7 C 1.40069 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 186.28432 * 7 2 1 9 9 C 1.41561 * 119.99790 * 6.29241 * 7 2 1 10 10 N 1.33682 * 119.66788 * 353.69949 * 9 7 2 11 11 N 1.28695 * 121.38535 * 180.02562 * 10 9 7 12 12 C 1.32391 * 120.62755 * 359.97438 * 11 10 9 13 13 C 1.40274 * 119.29582 * 0.27643 * 12 11 10 14 14 C 1.48276 * 120.64184 * 179.72281 * 13 12 11 15 15 C 1.39412 * 120.11115 * 184.72827 * 14 13 12 16 16 C 1.37965 * 119.88512 * 179.74181 * 15 14 13 17 17 C 1.38463 * 120.11454 * 0.53061 * 16 15 14 18 18 Cl 1.73598 * 119.88768 * 179.69753 * 17 16 15 19 19 C 1.38470 * 120.22287 * 359.72078 * 17 16 15 20 20 C 1.37966 * 120.11091 * 0.02562 * 19 17 16 21 21 N 1.32884 * 118.71316 * 359.42050 * 13 12 11 22 22 H 0.97007 * 120.00183 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.34739 * 180.02562 * 12 11 10 24 24 H 1.08002 * 120.05294 * 359.97438 * 15 14 13 25 25 H 1.08006 * 119.93973 * 180.22984 * 16 15 14 26 26 H 1.07994 * 119.93808 * 179.97438 * 19 17 16 27 27 H 1.08006 * 120.05406 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0072 -1.2130 0.0005 8 1 3.0823 -1.2158 0.1029 9 6 1.3058 -2.4353 -0.1333 10 7 -0.0310 -2.4346 -0.1327 11 7 -0.7019 -3.5264 -0.2517 12 6 -0.0813 -4.6888 -0.3795 13 6 1.3210 -4.7220 -0.3783 14 6 2.0467 -6.0081 -0.5133 15 6 3.4367 -6.0408 -0.4121 16 6 4.1067 -7.2407 -0.5332 17 6 3.4018 -8.4096 -0.7657 18 17 4.2515 -9.9150 -0.9249 19 6 2.0215 -8.3817 -0.8722 20 6 1.3417 -7.1876 -0.7475 21 7 1.9866 -3.5780 -0.2599 22 1 -0.4851 0.8401 -0.0004 23 1 -0.6488 -5.6023 -0.4794 24 1 3.9878 -5.1289 -0.2355 25 1 5.1833 -7.2676 -0.4513 26 1 1.4764 -9.2960 -1.0541 27 1 0.2650 -7.1670 -0.8303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261361010.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:57 Heat of formation + Delta-G solvation = 60.348805 kcal Electronic energy + Delta-G solvation = -15820.916826 eV Core-core repulsion = 12990.100229 eV Total energy + Delta-G solvation = -2830.816597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.036 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67261 -40.05377 -37.49963 -36.05800 -35.23353 -33.44809 -32.11395 -30.81034 -28.74603 -25.94820 -24.93882 -23.32396 -22.71382 -19.95538 -18.74507 -18.27134 -17.14436 -16.77891 -16.51328 -15.99041 -15.80420 -15.30947 -14.68769 -14.49445 -14.45896 -13.44385 -13.26133 -13.02390 -12.81040 -12.75303 -12.59002 -12.28503 -12.00103 -11.98360 -11.81840 -11.49928 -11.39106 -10.55089 -10.06342 -9.49377 -9.40673 -8.66339 -6.99493 -0.48657 0.31030 0.54939 0.84753 1.08838 1.38584 1.50024 1.57159 2.14878 2.51437 2.75987 3.17713 3.61896 3.68280 3.85109 3.93166 3.98312 4.27147 4.32048 4.46731 4.64550 4.87066 5.00786 5.06303 5.10584 5.18481 5.41299 5.51587 5.72357 5.92784 6.27669 6.41035 6.89252 8.18925 8.55029 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.040591 B = 0.004327 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.639415 B = 6469.518739 C = 7142.612205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.016 3.984 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.250 1.250 7 C -0.411 4.411 8 H 0.103 0.897 9 C 0.289 3.711 10 N -0.333 5.333 11 N -0.219 5.219 12 C -0.152 4.152 13 C 0.185 3.815 14 C -0.055 4.055 15 C -0.077 4.077 16 C -0.113 4.113 17 C -0.027 4.027 18 Cl -0.060 7.060 19 C -0.107 4.107 20 C -0.077 4.077 21 N -0.547 5.547 22 H 0.293 0.707 23 H 0.187 0.813 24 H 0.128 0.872 25 H 0.155 0.845 26 H 0.167 0.833 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -12.697 -1.588 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.208 4.208 3 Si 0.827 3.173 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.173 1.173 7 C -0.447 4.447 8 H 0.121 0.879 9 C 0.051 3.949 10 N -0.193 5.193 11 N -0.070 5.070 12 C -0.323 4.323 13 C 0.024 3.976 14 C -0.057 4.057 15 C -0.096 4.096 16 C -0.132 4.132 17 C -0.055 4.055 18 Cl -0.031 7.031 19 C -0.125 4.125 20 C -0.097 4.097 21 N -0.271 5.271 22 H 0.104 0.896 23 H 0.204 0.796 24 H 0.146 0.854 25 H 0.172 0.828 26 H 0.185 0.815 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.101 -11.656 -1.478 13.239 hybrid contribution 0.527 -0.104 -0.067 0.541 sum 6.628 -11.760 -1.545 13.587 Atomic orbital electron populations 1.70145 1.09322 1.30898 1.26117 1.27283 0.95940 1.05257 0.92322 0.84791 0.78909 0.73856 0.79741 1.18377 1.18426 1.17268 1.19794 0.95841 0.88259 1.40808 0.87891 1.21715 0.89068 0.92478 0.91599 1.74735 1.06942 1.15702 1.21892 1.73271 1.34030 0.96866 1.02856 1.24623 0.93786 0.99755 1.14113 1.21153 0.92234 0.93088 0.91091 1.18700 0.93753 0.90376 1.02883 1.21314 0.93244 0.98446 0.96633 1.21154 1.01485 0.89971 1.00567 1.21209 0.93181 0.87552 1.03523 1.98369 1.77518 1.31118 1.96064 1.21225 0.91928 0.99153 1.00197 1.21414 1.01499 0.89997 0.96783 1.69251 1.39926 0.98688 1.19198 0.89607 0.79636 0.85368 0.82751 0.81515 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.84 11.48 21.84 0.25 -39.59 15 2 C 0.02 0.82 5.49 85.31 0.47 1.29 15 3 Si 1.01 36.48 29.56 68.60 2.03 38.51 15 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 7 C -0.41 -22.43 9.38 23.53 0.22 -22.21 15 8 H 0.10 5.27 7.86 -2.91 -0.02 5.25 15 9 C 0.29 16.78 7.42 135.03 1.00 17.78 15 10 N -0.33 -19.96 9.09 -56.36 -0.51 -20.48 15 11 N -0.22 -11.92 11.62 -55.92 -0.65 -12.57 15 12 C -0.15 -6.84 10.75 85.10 0.91 -5.93 15 13 C 0.18 8.32 6.76 42.15 0.28 8.61 15 14 C -0.06 -1.90 5.87 -20.04 -0.12 -2.02 15 15 C -0.08 -2.41 9.59 22.49 0.22 -2.19 15 16 C -0.11 -2.76 9.81 22.26 0.22 -2.54 15 17 C -0.03 -0.60 6.32 22.38 0.14 -0.46 15 18 Cl -0.06 -1.11 28.95 -2.72 -0.08 -1.19 15 19 C -0.11 -2.22 9.81 22.26 0.22 -2.01 15 20 C -0.08 -1.99 9.44 22.48 0.21 -1.78 15 21 N -0.55 -28.62 9.65 -182.56 -1.76 -30.38 15 22 H 0.29 13.85 8.29 -92.70 -0.77 13.08 15 23 H 0.19 6.39 6.34 -2.91 -0.02 6.37 15 24 H 0.13 4.42 7.59 -2.91 -0.02 4.40 15 25 H 0.15 3.03 8.06 -2.91 -0.02 3.00 15 26 H 0.17 2.41 8.06 -2.91 -0.02 2.38 15 27 H 0.16 3.36 6.30 -2.91 -0.02 3.35 15 Total: -1.00 -67.92 264.83 4.28 -63.64 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.22 Total: 13.52 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.78 Total: -11.46 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -2.67 Total: -103.01 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -67.92 4.28 -63.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261361010.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.987 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds