Wall clock time and date at job start Mon Mar 30 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46909 * 2 1 4 4 N 1.46896 * 109.47558 * 120.00397 * 2 1 3 5 5 C 1.46897 * 110.99795 * 275.00264 * 4 2 1 6 6 H 1.09003 * 110.01903 * 326.38689 * 5 4 2 7 7 C 1.53876 * 110.07317 * 87.80917 * 5 4 2 8 8 C 1.54263 * 106.60223 * 119.30550 * 7 5 4 9 9 C 1.54897 * 104.19390 * 23.61112 * 8 7 5 10 10 H 1.08989 * 110.91635 * 80.44732 * 9 8 7 11 11 C 1.50706 * 110.75360 * 203.74287 * 9 8 7 12 12 H 1.08008 * 119.99758 * 88.13007 * 11 9 8 13 13 C 1.37870 * 120.00114 * 268.12448 * 11 9 8 14 14 N 1.31517 * 119.99899 * 174.96006 * 13 11 9 15 15 Si 1.86803 * 120.00072 * 355.24198 * 13 11 9 16 16 H 1.48501 * 109.46840 * 274.90113 * 15 13 11 17 17 H 1.48492 * 109.47143 * 34.89763 * 15 13 11 18 18 H 1.48496 * 109.47093 * 154.90235 * 15 13 11 19 19 C 1.54262 * 110.03272 * 204.99515 * 5 4 2 20 20 C 1.50702 * 109.47049 * 240.00746 * 2 1 3 21 21 C 1.38651 * 120.78505 * 279.71058 * 20 2 1 22 22 C 1.38210 * 119.15774 * 179.75558 * 21 20 2 23 23 N 1.31867 * 120.76795 * 0.53784 * 22 21 20 24 24 C 1.31874 * 121.72428 * 359.73798 * 23 22 21 25 25 C 1.38208 * 120.76308 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47718 * 59.99987 * 1 2 3 27 27 H 1.09009 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47448 * 299.99524 * 1 2 3 29 29 H 1.00901 * 110.99947 * 38.95485 * 4 2 1 30 30 H 1.09002 * 110.03046 * 238.59004 * 7 5 4 31 31 H 1.08995 * 110.03664 * 359.97076 * 7 5 4 32 32 H 1.09000 * 110.48963 * 264.93321 * 8 7 5 33 33 H 1.09001 * 110.49137 * 142.28541 * 8 7 5 34 34 H 0.97004 * 119.99475 * 180.02562 * 14 13 11 35 35 H 1.09006 * 110.48939 * 98.38192 * 19 5 4 36 36 H 1.09005 * 110.60132 * 335.79393 * 19 5 4 37 37 H 1.07992 * 120.42215 * 0.02562 * 21 20 2 38 38 H 1.08003 * 119.61339 * 180.25564 * 22 21 20 39 39 H 1.07999 * 119.62002 * 180.02562 * 24 23 22 40 40 H 1.07994 * 120.41986 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 1 2.3403 1.2265 2.0098 7 6 0.7298 0.2436 3.0800 8 6 1.0003 -0.2445 4.5182 9 6 2.5037 0.0526 4.7436 10 1 2.6594 1.1012 4.9968 11 6 3.0703 -0.8432 5.8149 12 1 3.4688 -1.8124 5.5534 13 6 3.0801 -0.4256 7.1288 14 7 3.4823 -1.2444 8.0761 15 14 2.5146 1.3007 7.5643 16 1 3.6476 2.2475 7.4059 17 1 1.4054 1.7008 6.6617 18 1 2.0412 1.3262 8.9716 19 6 3.1278 -0.2778 3.3650 20 6 2.0323 -0.7103 -1.2306 21 6 2.0794 -2.0950 -1.2811 22 6 2.5414 -2.7116 -2.4286 23 7 2.9439 -1.9986 -3.4622 24 6 2.9184 -0.6802 -3.4473 25 6 2.4638 0.0056 -2.3368 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.4497 -1.4980 1.4099 30 1 0.3311 1.2579 3.0988 31 1 0.0259 -0.4248 2.5843 32 1 0.8062 -1.3138 4.6010 33 1 0.3907 0.3112 5.2307 34 1 3.4888 -0.9506 9.0006 35 1 4.0708 0.2536 3.2361 36 1 3.2794 -1.3524 3.2625 37 1 1.7552 -2.6844 -0.4363 38 1 2.5773 -3.7900 -2.4775 39 1 3.2559 -0.1300 -4.3132 40 1 2.4449 1.0853 -2.3308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296348799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:47 Heat of formation + Delta-G solvation = 1.457360 kcal Electronic energy + Delta-G solvation = -19165.199267 eV Core-core repulsion = 16364.044975 eV Total energy + Delta-G solvation = -2801.154292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15315 -39.67995 -36.96870 -34.58169 -32.93821 -32.01753 -30.48890 -29.97599 -27.93895 -25.68233 -24.84314 -24.15090 -21.87797 -20.96920 -20.84148 -19.05570 -17.83029 -17.25450 -16.71112 -16.44788 -16.25595 -15.61318 -15.30834 -14.81356 -14.73298 -14.42438 -14.36762 -14.10655 -13.94273 -13.83993 -13.31162 -12.84224 -12.76885 -12.58632 -12.28742 -12.04606 -11.91976 -11.60769 -11.56130 -11.46730 -11.17961 -10.99844 -10.63737 -10.41857 -10.35363 -9.98706 -9.26314 -8.26085 -6.27848 0.30241 0.39898 1.36482 1.37109 1.48693 2.37725 2.91952 3.07808 3.22909 3.66963 3.74232 3.90255 4.03178 4.05860 4.18963 4.22509 4.32042 4.37001 4.41484 4.67723 4.71964 4.75750 4.82045 4.85342 4.95552 4.98953 5.02177 5.06591 5.13471 5.17068 5.24869 5.27780 5.37361 5.53574 5.60983 5.66824 5.80935 5.87569 6.24878 6.38201 6.50766 6.78956 7.11053 7.36836 8.91290 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038548 B = 0.004042 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.184519 B = 6926.068540 C = 7206.991654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.123 3.877 3 H 0.095 0.905 4 N -0.681 5.681 5 C 0.097 3.903 6 H 0.086 0.914 7 C -0.141 4.141 8 C -0.119 4.119 9 C 0.004 3.996 10 H 0.035 0.965 11 C -0.509 4.509 12 H 0.026 0.974 13 C 0.005 3.995 14 N -0.956 5.956 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.240 1.240 18 H -0.292 1.292 19 C -0.093 4.093 20 C -0.028 4.028 21 C -0.160 4.160 22 C 0.082 3.918 23 N -0.519 5.519 24 C 0.085 3.915 25 C -0.173 4.173 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.345 0.655 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 5.693 -21.162 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.113 0.887 4 N -0.311 5.311 5 C -0.012 4.012 6 H 0.104 0.896 7 C -0.180 4.180 8 C -0.157 4.157 9 C -0.015 4.015 10 H 0.053 0.947 11 C -0.547 4.547 12 H 0.045 0.955 13 C -0.191 4.191 14 N -0.596 5.596 15 Si 0.769 3.231 16 H -0.194 1.194 17 H -0.163 1.163 18 H -0.218 1.218 19 C -0.131 4.131 20 C -0.037 4.037 21 C -0.180 4.180 22 C -0.074 4.074 23 N -0.229 5.229 24 C -0.071 4.071 25 C -0.193 4.193 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.165 0.835 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.156 0.844 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.666 5.314 -21.900 23.500 hybrid contribution -1.024 0.587 1.956 2.284 sum -7.690 5.901 -19.944 22.175 Atomic orbital electron populations 1.22540 0.94730 1.02794 1.03325 1.20557 0.93813 0.97285 0.87056 0.88691 1.60597 1.57635 1.09531 1.03377 1.22161 0.93958 0.95703 0.89418 0.89611 1.22938 0.97603 1.01642 0.95771 1.22504 0.97784 0.99544 0.95886 1.20070 0.92999 0.95141 0.93270 0.94722 1.21347 1.38668 1.02509 0.92160 0.95537 1.26004 0.95093 1.01702 0.96310 1.70087 1.50560 1.38015 1.00984 0.85779 0.80080 0.79993 0.77259 1.19377 1.16332 1.21811 1.22225 0.97217 1.00010 0.93655 1.20438 0.94283 0.94055 0.94949 1.22069 1.01192 0.95314 0.99443 1.23042 0.94395 1.01155 0.88794 1.67668 1.16095 1.09134 1.29988 1.23128 0.95534 0.89987 0.98485 1.22257 1.00642 1.02442 0.93931 0.91126 0.92231 0.91162 0.83490 0.90973 0.90611 0.93704 0.93937 0.92762 0.93284 0.93441 0.84421 0.81529 0.80749 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.55 71.98 0.62 -2.13 16 2 C 0.12 2.29 2.83 44.17 0.12 2.42 16 3 H 0.10 1.68 7.33 -2.39 -0.02 1.67 16 4 N -0.68 -16.31 5.49 -469.62 -2.58 -18.89 16 5 C 0.10 2.72 3.23 45.64 0.15 2.87 16 6 H 0.09 2.17 7.43 -2.39 -0.02 2.15 16 7 C -0.14 -3.87 5.14 31.32 0.16 -3.71 16 8 C -0.12 -4.56 6.24 31.67 0.20 -4.36 16 9 C 0.00 0.20 2.28 -10.24 -0.02 0.17 16 10 H 0.03 1.53 5.80 -2.39 -0.01 1.51 16 11 C -0.51 -28.96 8.94 25.60 0.23 -28.73 16 12 H 0.03 1.69 8.00 -2.91 -0.02 1.67 16 13 C 0.00 0.29 5.47 84.65 0.46 0.75 16 14 N -0.96 -60.38 13.96 21.45 0.30 -60.08 16 15 Si 0.94 43.93 26.98 68.60 1.85 45.78 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.24 -10.10 6.32 99.48 0.63 -9.47 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 C -0.09 -3.53 5.97 31.67 0.19 -3.34 16 20 C -0.03 -0.56 4.98 -19.67 -0.10 -0.66 16 21 C -0.16 -3.30 9.43 22.36 0.21 -3.09 16 22 C 0.08 1.73 11.18 84.68 0.95 2.68 16 23 N -0.52 -11.98 10.36 -195.83 -2.03 -14.00 16 24 C 0.09 1.60 11.18 84.68 0.95 2.55 16 25 C -0.17 -3.02 9.78 22.36 0.22 -2.80 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 28 H 0.07 1.12 6.02 -2.39 -0.01 1.10 16 29 H 0.35 8.08 7.34 -89.69 -0.66 7.43 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.79 6.22 -2.39 -0.01 1.77 16 32 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 33 H 0.04 1.64 7.53 -2.39 -0.02 1.62 16 34 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 35 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.05 1.97 7.91 -2.38 -0.02 1.95 16 37 H 0.14 2.62 7.37 -2.91 -0.02 2.60 16 38 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.96 316.56 2.16 -65.80 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.29 Total: 18.78 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.33 Total: -37.39 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.31 Total: -92.98 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.85 Total: 45.78 kcal Total: -67.96 2.16 -65.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296348799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.260 kcal (2) G-P(sol) polarization free energy of solvation -67.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds