Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46951 * 2 1 4 4 N 1.46900 * 109.47223 * 240.00301 * 2 1 3 5 5 C 1.46900 * 111.00339 * 84.99699 * 4 2 1 6 6 H 1.09003 * 110.53346 * 327.61386 * 5 4 2 7 7 C 1.54463 * 110.65967 * 90.23953 * 5 4 2 8 8 C 1.53877 * 106.68421 * 142.05489 * 7 5 4 9 9 C 1.54265 * 106.59605 * 0.15594 * 8 7 5 10 10 H 1.09004 * 110.59809 * 95.12740 * 9 8 7 11 11 C 1.50701 * 110.48496 * 217.70899 * 9 8 7 12 12 H 1.08007 * 119.99597 * 114.77641 * 11 9 8 13 13 C 1.37869 * 120.00267 * 294.77624 * 11 9 8 14 14 N 1.31511 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 120.00208 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46764 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47102 * 119.99990 * 15 13 11 18 18 H 1.48498 * 109.47462 * 240.00746 * 15 13 11 19 19 C 1.54887 * 104.20056 * 336.39127 * 9 8 7 20 20 C 1.50697 * 109.47354 * 120.00047 * 2 1 3 21 21 C 1.38644 * 120.79282 * 79.71957 * 20 2 1 22 22 C 1.38210 * 119.16627 * 179.75863 * 21 20 2 23 23 N 1.31868 * 120.75695 * 0.53009 * 22 21 20 24 24 C 1.31866 * 121.73105 * 359.73870 * 23 22 21 25 25 C 1.38202 * 120.76589 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47363 * 299.99587 * 1 2 3 27 27 H 1.08997 * 109.47309 * 60.00279 * 1 2 3 28 28 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.00898 * 111.00244 * 208.95508 * 4 2 1 30 30 H 1.08999 * 109.85715 * 22.81285 * 7 5 4 31 31 H 1.09003 * 110.15968 * 261.45915 * 7 5 4 32 32 H 1.08995 * 110.02951 * 240.87549 * 8 7 5 33 33 H 1.08998 * 110.07557 * 119.46051 * 8 7 5 34 34 H 0.97007 * 120.00152 * 180.02562 * 14 13 11 35 35 H 1.09002 * 110.75856 * 156.25785 * 19 9 8 36 36 H 1.09006 * 110.75640 * 279.44771 * 19 9 8 37 37 H 1.08002 * 120.41798 * 359.97438 * 21 20 2 38 38 H 1.07996 * 119.61879 * 180.25700 * 22 21 20 39 39 H 1.07996 * 119.61978 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.42528 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 1 1.2916 0.9701 -2.2836 7 6 3.4652 0.9067 -2.4234 8 6 3.8266 1.0068 -3.9158 9 6 2.6508 0.3843 -4.6966 10 1 1.9516 1.1568 -5.0172 11 6 3.1584 -0.3915 -5.8846 12 1 3.0242 -1.4624 -5.9276 13 6 3.7943 0.2655 -6.9165 14 7 3.9582 1.5693 -6.8640 15 14 4.4242 -0.6964 -8.3888 16 1 4.1176 -2.1379 -8.2062 17 1 3.7622 -0.2024 -9.6228 18 1 5.8931 -0.5137 -8.5079 19 6 1.9776 -0.5663 -3.6757 20 6 2.0324 -0.7104 1.2304 21 6 2.0686 -2.0953 1.2854 22 6 2.5405 -2.7119 2.4287 23 7 2.9431 -1.9988 3.4623 24 6 2.9177 -0.6805 3.4475 25 6 2.4642 0.0054 2.3367 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.9173 -1.1205 -1.0288 30 1 4.2064 0.3032 -1.8994 31 1 3.4164 1.9028 -1.9835 32 1 4.7431 0.4519 -4.1160 33 1 3.9529 2.0512 -4.2010 34 1 4.4053 2.0316 -7.5902 35 1 0.9347 -0.7410 -3.9400 36 1 2.5209 -1.5089 -3.6092 37 1 1.7356 -2.6848 0.4439 38 1 2.5758 -3.7902 2.4778 39 1 3.2551 -0.1303 4.3134 40 1 2.4454 1.0853 2.3306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296348803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = 16.061695 kcal Electronic energy + Delta-G solvation = -19105.238573 eV Core-core repulsion = 16304.717573 eV Total energy + Delta-G solvation = -2800.521000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38131 -38.08196 -35.67665 -32.78429 -31.49735 -31.22191 -29.37860 -28.02270 -26.35921 -24.24903 -23.71325 -23.17719 -20.77620 -19.64198 -19.00272 -16.98774 -16.63497 -16.14573 -15.71027 -15.14856 -14.64249 -14.33280 -14.25225 -14.03298 -13.65866 -13.39495 -12.80968 -12.43068 -12.22505 -12.08723 -11.79792 -11.54293 -11.40654 -11.07585 -10.93490 -10.65339 -10.48480 -10.16235 -9.86582 -9.68199 -9.57946 -9.54526 -9.26239 -9.10449 -8.71342 -8.36801 -8.08205 -5.99148 -4.01251 1.02154 1.12700 3.30595 3.38850 3.42947 3.69859 4.22436 4.34357 4.46040 4.48831 4.77461 5.01602 5.06663 5.23138 5.30745 5.33926 5.51083 5.54760 5.62264 5.64470 5.69586 5.81648 5.86905 5.97431 6.12842 6.21383 6.30789 6.47010 6.59096 6.64610 6.71975 6.83482 7.03044 7.12997 7.34530 7.46786 7.62699 7.71932 7.84551 7.91999 8.04581 8.49641 9.02563 9.62876 11.10793 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036738 B = 0.003841 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.966673 B = 7288.210563 C = 7420.626046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.119 3.881 3 H 0.054 0.946 4 N -0.674 5.674 5 C 0.080 3.920 6 H 0.073 0.927 7 C -0.152 4.152 8 C -0.094 4.094 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.098 4.098 20 C -0.039 4.039 21 C -0.153 4.153 22 C 0.094 3.906 23 N -0.491 5.491 24 C 0.094 3.906 25 C -0.170 4.170 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.340 0.660 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.258 0.742 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 -2.683 17.154 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.009 3.991 3 H 0.072 0.928 4 N -0.305 5.305 5 C -0.029 4.029 6 H 0.091 0.909 7 C -0.191 4.191 8 C -0.133 4.133 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.136 4.136 20 C -0.048 4.048 21 C -0.173 4.173 22 C -0.063 4.063 23 N -0.201 5.201 24 C -0.063 4.063 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.453 -3.216 17.631 18.467 hybrid contribution 0.997 0.683 -1.373 1.830 sum -3.455 -2.533 16.258 16.813 Atomic orbital electron populations 1.21778 0.93358 1.02626 1.01407 1.20494 0.96216 0.95503 0.86844 0.92783 1.60848 1.33464 1.32992 1.03244 1.22653 0.96203 0.93389 0.90667 0.90896 1.22971 0.96766 0.98853 1.00494 1.22031 1.00568 1.00884 0.89821 1.19459 0.92515 0.93412 0.91849 0.95257 1.21210 1.36785 0.93834 1.03025 0.92582 1.24990 0.96110 0.94822 0.98138 1.69981 1.43115 1.07346 1.32553 0.86606 0.78505 0.80368 0.82945 1.19766 1.21108 1.21153 1.22522 0.99615 0.98945 0.92529 1.20506 0.94670 0.94215 0.95400 1.22133 1.00366 0.94886 0.99909 1.22796 0.94327 1.00317 0.88822 1.67649 1.15154 1.08062 1.29188 1.22689 0.95886 0.90269 0.97427 1.22072 1.01103 1.01370 0.94465 0.92911 0.91796 0.91833 0.84060 0.93515 0.93845 0.93132 0.92934 0.93227 0.93341 0.92302 0.83796 0.82821 0.82989 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.38 37.16 0.35 -1.15 16 2 C 0.12 1.43 2.72 -68.87 -0.19 1.24 16 3 H 0.05 0.67 7.76 -51.93 -0.40 0.27 16 4 N -0.67 -9.49 5.64 -99.11 -0.56 -10.04 16 5 C 0.08 1.35 2.94 -65.95 -0.19 1.16 16 6 H 0.07 1.22 7.21 -51.93 -0.37 0.84 16 7 C -0.15 -2.74 6.51 -25.51 -0.17 -2.91 16 8 C -0.09 -2.16 5.60 -25.61 -0.14 -2.31 16 9 C 0.05 1.14 2.73 -90.11 -0.25 0.89 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.51 -13.93 8.36 -34.44 -0.29 -14.22 16 12 H 0.06 1.52 7.77 -52.48 -0.41 1.11 16 13 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 14 N -0.89 -25.65 12.63 55.43 0.70 -24.95 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.10 -1.98 5.96 -24.74 -0.15 -2.13 16 20 C -0.04 -0.44 4.73 -104.32 -0.49 -0.94 16 21 C -0.15 -1.67 9.13 -39.44 -0.36 -2.03 16 22 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 23 N -0.49 -5.86 10.36 -13.26 -0.14 -6.00 16 24 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 25 C -0.17 -1.74 9.78 -39.44 -0.39 -2.13 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.76 7.50 -51.93 -0.39 0.37 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.34 4.81 7.36 -39.29 -0.29 4.52 16 30 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 33 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 37 H 0.14 1.51 7.81 -52.49 -0.41 1.10 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -28.98 325.09 -9.29 -38.27 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.42 Total: 2.87 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.75 Total: -21.33 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.00 Total: -40.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.98 -9.29 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296348803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.331 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds