Wall clock time and date at job start Mon Mar 30 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46951 * 2 1 4 4 N 1.46900 * 109.47223 * 240.00301 * 2 1 3 5 5 C 1.46900 * 111.00339 * 84.99699 * 4 2 1 6 6 H 1.09003 * 110.53346 * 327.61386 * 5 4 2 7 7 C 1.54463 * 110.65967 * 90.23953 * 5 4 2 8 8 C 1.53877 * 106.68421 * 142.05489 * 7 5 4 9 9 C 1.54265 * 106.59605 * 0.15594 * 8 7 5 10 10 H 1.09004 * 110.59809 * 95.12740 * 9 8 7 11 11 C 1.50701 * 110.48496 * 217.70899 * 9 8 7 12 12 H 1.08007 * 119.99597 * 114.77641 * 11 9 8 13 13 C 1.37869 * 120.00267 * 294.77624 * 11 9 8 14 14 N 1.31511 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 120.00208 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46764 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47102 * 119.99990 * 15 13 11 18 18 H 1.48498 * 109.47462 * 240.00746 * 15 13 11 19 19 C 1.54887 * 104.20056 * 336.39127 * 9 8 7 20 20 C 1.50697 * 109.47354 * 120.00047 * 2 1 3 21 21 C 1.38644 * 120.79282 * 79.71957 * 20 2 1 22 22 C 1.38210 * 119.16627 * 179.75863 * 21 20 2 23 23 N 1.31868 * 120.75695 * 0.53009 * 22 21 20 24 24 C 1.31866 * 121.73105 * 359.73870 * 23 22 21 25 25 C 1.38202 * 120.76589 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47363 * 299.99587 * 1 2 3 27 27 H 1.08997 * 109.47309 * 60.00279 * 1 2 3 28 28 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.00898 * 111.00244 * 208.95508 * 4 2 1 30 30 H 1.08999 * 109.85715 * 22.81285 * 7 5 4 31 31 H 1.09003 * 110.15968 * 261.45915 * 7 5 4 32 32 H 1.08995 * 110.02951 * 240.87549 * 8 7 5 33 33 H 1.08998 * 110.07557 * 119.46051 * 8 7 5 34 34 H 0.97007 * 120.00152 * 180.02562 * 14 13 11 35 35 H 1.09002 * 110.75856 * 156.25785 * 19 9 8 36 36 H 1.09006 * 110.75640 * 279.44771 * 19 9 8 37 37 H 1.08002 * 120.41798 * 359.97438 * 21 20 2 38 38 H 1.07996 * 119.61879 * 180.25700 * 22 21 20 39 39 H 1.07996 * 119.61978 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.42528 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 1 1.2916 0.9701 -2.2836 7 6 3.4652 0.9067 -2.4234 8 6 3.8266 1.0068 -3.9158 9 6 2.6508 0.3843 -4.6966 10 1 1.9516 1.1568 -5.0172 11 6 3.1584 -0.3915 -5.8846 12 1 3.0242 -1.4624 -5.9276 13 6 3.7943 0.2655 -6.9165 14 7 3.9582 1.5693 -6.8640 15 14 4.4242 -0.6964 -8.3888 16 1 4.1176 -2.1379 -8.2062 17 1 3.7622 -0.2024 -9.6228 18 1 5.8931 -0.5137 -8.5079 19 6 1.9776 -0.5663 -3.6757 20 6 2.0324 -0.7104 1.2304 21 6 2.0686 -2.0953 1.2854 22 6 2.5405 -2.7119 2.4287 23 7 2.9431 -1.9988 3.4623 24 6 2.9177 -0.6805 3.4475 25 6 2.4642 0.0054 2.3367 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.9173 -1.1205 -1.0288 30 1 4.2064 0.3032 -1.8994 31 1 3.4164 1.9028 -1.9835 32 1 4.7431 0.4519 -4.1160 33 1 3.9529 2.0512 -4.2010 34 1 4.4053 2.0316 -7.5902 35 1 0.9347 -0.7410 -3.9400 36 1 2.5209 -1.5089 -3.6092 37 1 1.7356 -2.6848 0.4439 38 1 2.5758 -3.7902 2.4778 39 1 3.2551 -0.1303 4.3134 40 1 2.4454 1.0853 2.3306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296348803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:50 Heat of formation + Delta-G solvation = -0.442453 kcal Electronic energy + Delta-G solvation = -19105.954247 eV Core-core repulsion = 16304.717573 eV Total energy + Delta-G solvation = -2801.236674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20944 -39.48926 -36.96985 -34.57067 -32.73681 -32.05413 -30.51543 -29.73150 -27.93803 -25.67731 -24.84789 -24.21314 -21.73316 -21.10624 -20.83256 -18.37520 -17.87634 -17.39450 -16.59174 -16.56099 -16.26704 -15.64651 -15.44764 -15.14834 -14.53944 -14.36192 -14.32917 -14.03752 -13.62115 -13.41931 -13.04002 -12.88831 -12.70820 -12.54112 -12.49984 -12.29658 -12.07155 -11.78635 -11.55914 -11.34779 -10.99574 -10.74348 -10.49765 -10.47294 -10.38649 -10.03328 -9.28897 -8.11663 -6.20571 0.25052 0.30581 1.39489 1.41618 1.52957 2.43813 2.89670 3.14705 3.20260 3.56336 3.65619 3.93451 4.04589 4.05913 4.20637 4.28341 4.29963 4.41797 4.46003 4.66493 4.76591 4.81544 4.87737 4.93077 4.97480 5.02843 5.04780 5.11672 5.18101 5.26013 5.34082 5.37212 5.44887 5.52740 5.66846 5.82585 5.93220 5.99973 6.19704 6.40963 6.48802 6.91680 7.06555 7.46986 8.97691 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036738 B = 0.003841 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.966673 B = 7288.210563 C = 7420.626046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.123 3.877 3 H 0.057 0.943 4 N -0.670 5.670 5 C 0.098 3.902 6 H 0.079 0.921 7 C -0.140 4.140 8 C -0.086 4.086 9 C 0.036 3.964 10 H -0.001 1.001 11 C -0.528 4.528 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.951 3.049 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.089 4.089 20 C -0.049 4.049 21 C -0.158 4.158 22 C 0.087 3.913 23 N -0.514 5.514 24 C 0.088 3.912 25 C -0.170 4.170 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.342 0.658 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.146 0.854 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -3.206 18.611 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 H 0.075 0.925 4 N -0.301 5.301 5 C -0.012 4.012 6 H 0.098 0.902 7 C -0.179 4.179 8 C -0.125 4.125 9 C 0.017 3.983 10 H 0.017 0.983 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.777 3.223 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.127 4.127 20 C -0.057 4.057 21 C -0.178 4.178 22 C -0.069 4.069 23 N -0.224 5.224 24 C -0.069 4.069 25 C -0.190 4.190 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.163 0.837 38 H 0.190 0.810 39 H 0.194 0.806 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.593 -3.754 19.104 20.003 hybrid contribution 1.022 0.850 -1.802 2.239 sum -3.571 -2.903 17.301 17.903 Atomic orbital electron populations 1.21760 0.92736 1.02567 1.01844 1.20498 0.96621 0.95437 0.86109 0.92471 1.60735 1.33599 1.32362 1.03439 1.22332 0.95536 0.93060 0.90257 0.90240 1.22856 0.97839 1.00386 0.96811 1.21810 0.98909 0.98485 0.93271 1.19455 0.92792 0.93458 0.92565 0.98323 1.21592 1.36756 0.93961 1.04343 0.92931 1.25764 0.96429 0.95721 1.00928 1.70102 1.43904 1.08732 1.33408 0.85607 0.77879 0.79267 0.79535 1.19023 1.20688 1.20778 1.22336 0.98991 0.98026 0.93340 1.20491 0.95374 0.94407 0.95437 1.22188 1.00544 0.94950 1.00100 1.23119 0.93955 1.01330 0.88534 1.67690 1.15889 1.08989 1.29811 1.23129 0.95380 0.90019 0.98323 1.22286 1.00358 1.02393 0.93951 0.91296 0.92544 0.92151 0.83833 0.92127 0.92160 0.95521 0.95538 0.93223 0.93175 0.92779 0.83652 0.81020 0.80639 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 71.98 0.68 -1.96 16 2 C 0.12 2.64 2.72 44.17 0.12 2.76 16 3 H 0.06 1.23 7.76 -2.39 -0.02 1.21 16 4 N -0.67 -17.45 5.64 -467.47 -2.64 -20.09 16 5 C 0.10 3.16 2.94 46.06 0.14 3.30 16 6 H 0.08 2.51 7.21 -2.39 -0.02 2.49 16 7 C -0.14 -4.86 6.51 31.39 0.20 -4.66 16 8 C -0.09 -4.01 5.60 31.32 0.18 -3.83 16 9 C 0.04 1.81 2.73 -10.47 -0.03 1.78 16 10 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 11 C -0.53 -29.40 8.36 25.60 0.21 -29.18 16 12 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 13 C 0.01 0.56 5.35 84.65 0.45 1.01 16 14 N -0.92 -54.29 12.63 21.44 0.27 -54.02 16 15 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 C -0.09 -3.56 5.96 31.88 0.19 -3.37 16 20 C -0.05 -0.97 4.73 -19.67 -0.09 -1.07 16 21 C -0.16 -3.14 9.13 22.36 0.20 -2.94 16 22 C 0.09 1.71 11.18 84.68 0.95 2.66 16 23 N -0.51 -11.28 10.36 -195.85 -2.03 -13.31 16 24 C 0.09 1.61 11.18 84.68 0.95 2.56 16 25 C -0.17 -3.01 9.78 22.36 0.22 -2.80 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.22 7.50 -2.39 -0.02 1.20 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.34 8.91 7.36 -89.70 -0.66 8.25 16 30 H 0.06 1.95 7.52 -2.39 -0.02 1.94 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 33 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 34 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 2.21 8.04 -2.38 -0.02 2.19 16 37 H 0.15 2.79 7.81 -2.91 -0.02 2.77 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -62.73 325.09 2.34 -60.39 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.35 Total: 16.63 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.36 Total: -35.74 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -4.39 Total: -87.42 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.73 2.34 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296348803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.947 kcal (2) G-P(sol) polarization free energy of solvation -62.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds