Wall clock time and date at job start Mon Mar 30 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 H 1.08993 * 110.43640 * 325.69820 * 5 4 2 7 7 C 1.54268 * 110.48572 * 88.24251 * 5 4 2 8 8 C 1.54093 * 106.49228 * 142.19522 * 7 5 4 9 9 C 1.54266 * 106.62115 * 0.17224 * 8 7 5 10 10 H 1.08994 * 110.59775 * 95.01330 * 9 8 7 11 11 C 1.50700 * 110.48494 * 217.60218 * 9 8 7 12 12 H 1.07995 * 120.00225 * 114.77366 * 11 9 8 13 13 C 1.37880 * 119.99759 * 294.77322 * 11 9 8 14 14 N 1.31519 * 119.99852 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 120.00056 * 0.02562 * 13 11 9 16 16 H 1.48499 * 109.47336 * 89.99694 * 15 13 11 17 17 H 1.48505 * 109.46929 * 210.00052 * 15 13 11 18 18 H 1.48499 * 109.47020 * 329.99327 * 15 13 11 19 19 C 1.54888 * 110.48494 * 203.15754 * 5 4 2 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38674 * 120.42147 * 259.72516 * 20 2 1 22 22 C 1.38628 * 118.41806 * 179.78363 * 21 20 2 23 23 C 1.38222 * 119.16086 * 0.47045 * 22 21 20 24 24 N 1.31853 * 120.76939 * 359.76730 * 23 22 21 25 25 C 1.31887 * 121.72038 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 30 30 H 1.08997 * 110.03042 * 261.57131 * 7 5 4 31 31 H 1.08994 * 110.03219 * 22.99946 * 7 5 4 32 32 H 1.08993 * 110.11005 * 240.82530 * 8 7 5 33 33 H 1.09003 * 109.96648 * 119.43279 * 8 7 5 34 34 H 0.96996 * 119.99975 * 180.02562 * 14 13 11 35 35 H 1.09005 * 110.75894 * 321.69606 * 19 5 4 36 36 H 1.09002 * 110.75727 * 84.88134 * 19 5 4 37 37 H 1.07995 * 120.78791 * 0.02562 * 21 20 2 38 38 H 1.08000 * 120.41519 * 180.22532 * 22 21 20 39 39 H 1.08006 * 119.61932 * 179.79430 * 23 22 21 40 40 H 1.08005 * 119.61342 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 1 1.2708 0.9486 -2.2996 7 6 3.4471 0.9410 -2.3906 8 6 3.8360 1.0511 -3.8776 9 6 2.6920 0.4002 -4.6822 10 1 1.9795 1.1549 -5.0149 11 6 3.2426 -0.3596 -5.8615 12 1 3.1371 -1.4333 -5.9090 13 6 3.8811 0.3162 -6.8797 14 7 4.3621 -0.3469 -7.9086 15 14 4.0643 2.1734 -6.7971 16 1 5.3347 2.5154 -6.1086 17 1 4.0815 2.7307 -8.1735 18 1 2.9220 2.7504 -6.0438 19 6 2.0242 -0.5699 -3.6763 20 6 2.0324 -0.7104 1.2304 21 6 2.4676 0.0132 2.3305 22 6 2.9170 -0.6827 3.4421 23 6 2.9256 -2.0646 3.4135 24 7 2.5089 -2.7198 2.3478 25 6 2.0709 -2.0910 1.2744 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.9174 -1.1204 -1.0288 30 1 3.3605 1.9343 -1.9503 31 1 4.1936 0.3572 -1.8521 32 1 4.7703 0.5207 -4.0609 33 1 3.9406 2.0992 -4.1583 34 1 4.8116 0.1284 -8.6247 35 1 2.5921 -1.4970 -3.5985 36 1 0.9915 -0.7738 -3.9595 37 1 2.4530 1.0930 2.3229 38 1 3.2598 -0.1517 4.3178 39 1 3.2773 -2.6142 4.2742 40 1 1.7380 -2.6618 0.4201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296359326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:12 Heat of formation + Delta-G solvation = 22.636376 kcal Electronic energy + Delta-G solvation = -19196.759143 eV Core-core repulsion = 16396.523242 eV Total energy + Delta-G solvation = -2800.235901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45650 -38.24942 -35.71639 -32.78261 -32.25515 -31.04925 -29.33322 -28.26743 -26.78291 -24.16736 -23.78830 -23.04160 -20.85246 -19.85435 -19.08314 -17.32098 -16.76039 -16.49615 -15.99836 -14.89805 -14.86212 -14.40918 -14.23193 -13.99406 -13.42817 -13.24229 -12.94700 -12.69713 -12.50798 -12.39231 -12.21288 -11.93461 -11.41549 -11.26147 -10.96207 -10.73303 -10.31155 -10.07368 -9.98111 -9.95813 -9.69194 -9.57497 -9.40056 -9.10655 -8.94018 -8.52383 -8.17318 -6.03760 -4.01896 0.93463 1.09833 3.29829 3.38527 3.40232 3.64734 4.17377 4.28824 4.44701 4.61090 4.66270 4.83250 4.91597 5.16200 5.22710 5.26021 5.35107 5.40487 5.47407 5.55728 5.63078 5.72891 5.84010 5.91561 5.98065 6.10070 6.20599 6.26193 6.37848 6.45483 6.54026 6.58308 6.75464 6.83764 6.95321 7.21624 7.32360 7.54433 7.60805 7.83230 7.84329 8.58351 9.01591 9.59577 11.09734 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.004095 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.132733 B = 6835.757817 C = 6900.651471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.126 3.874 3 H 0.052 0.948 4 N -0.675 5.675 5 C 0.079 3.921 6 H 0.075 0.925 7 C -0.147 4.147 8 C -0.127 4.127 9 C 0.009 3.991 10 H 0.030 0.970 11 C -0.506 4.506 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.265 1.265 19 C -0.087 4.087 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.176 4.176 23 C 0.091 3.909 24 N -0.485 5.485 25 C 0.117 3.883 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.342 0.658 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 2.517 21.698 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.070 0.930 4 N -0.306 5.306 5 C -0.030 4.030 6 H 0.094 0.906 7 C -0.186 4.186 8 C -0.165 4.165 9 C -0.010 4.010 10 H 0.048 0.952 11 C -0.544 4.544 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.190 1.190 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.195 4.195 23 C -0.066 4.066 24 N -0.193 5.193 25 C -0.040 4.040 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.222 1.361 21.368 22.039 hybrid contribution 1.144 2.663 0.238 2.908 sum -4.078 4.023 21.606 22.352 Atomic orbital electron populations 1.21794 0.93491 1.02692 1.01274 1.20387 0.96076 0.95298 0.86669 0.93017 1.60805 1.33604 1.32895 1.03314 1.22638 0.95956 0.93397 0.91012 0.90637 1.22873 0.97493 0.99359 0.98923 1.22605 1.01864 0.99311 0.92763 1.19969 0.92824 0.94461 0.93731 0.95156 1.21058 1.35788 0.95462 1.02110 0.90803 1.25011 0.95108 0.97900 0.95177 1.69911 1.38840 1.35794 1.09714 0.86911 0.78998 0.86757 0.76604 1.20496 1.22065 1.19002 1.22349 1.00015 0.98648 0.91547 1.21072 1.00338 0.95690 0.96741 1.21508 0.95356 1.00469 0.92586 1.22100 1.02089 0.95943 0.99414 1.22783 0.95705 0.91754 0.96360 1.67773 1.09975 1.41242 1.00347 1.22823 0.93861 0.91498 0.95805 0.91744 0.92979 0.91923 0.83874 0.93498 0.92750 0.91490 0.94298 0.92785 0.91581 0.92652 0.85095 0.84971 0.83004 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.38 37.16 0.35 -1.07 16 2 C 0.13 1.42 2.70 -68.86 -0.19 1.24 16 3 H 0.05 0.59 7.69 -51.93 -0.40 0.19 16 4 N -0.68 -9.01 5.56 -99.22 -0.55 -9.56 16 5 C 0.08 1.25 2.93 -66.05 -0.19 1.05 16 6 H 0.08 1.15 7.20 -51.93 -0.37 0.78 16 7 C -0.15 -2.44 6.43 -25.50 -0.16 -2.60 16 8 C -0.13 -2.66 4.89 -25.50 -0.12 -2.78 16 9 C 0.01 0.22 2.28 -90.11 -0.21 0.01 16 10 H 0.03 0.72 7.06 -51.93 -0.37 0.35 16 11 C -0.51 -14.12 8.94 -34.44 -0.31 -14.42 16 12 H 0.07 2.24 8.01 -52.49 -0.42 1.82 16 13 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 14 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 15 Si 0.88 21.77 24.88 -169.99 -4.23 17.54 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.27 -6.28 6.41 56.52 0.36 -5.92 16 19 C -0.09 -1.69 5.97 -24.74 -0.15 -1.84 16 20 C -0.14 -1.48 4.72 -104.48 -0.49 -1.97 16 21 C -0.07 -0.69 9.82 -39.28 -0.39 -1.07 16 22 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 23 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 24 N -0.49 -5.97 10.36 -13.25 -0.14 -6.10 16 25 C 0.12 1.39 10.18 -17.55 -0.18 1.21 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 29 H 0.34 4.62 7.38 -39.29 -0.29 4.33 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.85 7.55 -51.93 -0.39 0.46 16 32 H 0.07 1.50 7.83 -51.93 -0.41 1.10 16 33 H 0.04 0.81 6.04 -51.93 -0.31 0.50 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.17 1.93 7.72 -52.48 -0.41 1.52 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -30.37 317.44 -8.40 -38.77 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.31 Total: 3.14 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.73 Total: -21.57 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.08 Total: -42.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.23 Total: 17.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.37 -8.40 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296359326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.410 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds