Wall clock time and date at job start Mon Mar 30 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 H 1.08993 * 110.43640 * 325.69820 * 5 4 2 7 7 C 1.54268 * 110.48572 * 88.24251 * 5 4 2 8 8 C 1.54093 * 106.49228 * 142.19522 * 7 5 4 9 9 C 1.54266 * 106.62115 * 0.17224 * 8 7 5 10 10 H 1.08994 * 110.59775 * 95.01330 * 9 8 7 11 11 C 1.50700 * 110.48494 * 217.60218 * 9 8 7 12 12 H 1.07995 * 120.00225 * 114.77366 * 11 9 8 13 13 C 1.37880 * 119.99759 * 294.77322 * 11 9 8 14 14 N 1.31519 * 119.99852 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 120.00056 * 0.02562 * 13 11 9 16 16 H 1.48499 * 109.47336 * 89.99694 * 15 13 11 17 17 H 1.48505 * 109.46929 * 210.00052 * 15 13 11 18 18 H 1.48499 * 109.47020 * 329.99327 * 15 13 11 19 19 C 1.54888 * 110.48494 * 203.15754 * 5 4 2 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38674 * 120.42147 * 259.72516 * 20 2 1 22 22 C 1.38628 * 118.41806 * 179.78363 * 21 20 2 23 23 C 1.38222 * 119.16086 * 0.47045 * 22 21 20 24 24 N 1.31853 * 120.76939 * 359.76730 * 23 22 21 25 25 C 1.31887 * 121.72038 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 30 30 H 1.08997 * 110.03042 * 261.57131 * 7 5 4 31 31 H 1.08994 * 110.03219 * 22.99946 * 7 5 4 32 32 H 1.08993 * 110.11005 * 240.82530 * 8 7 5 33 33 H 1.09003 * 109.96648 * 119.43279 * 8 7 5 34 34 H 0.96996 * 119.99975 * 180.02562 * 14 13 11 35 35 H 1.09005 * 110.75894 * 321.69606 * 19 5 4 36 36 H 1.09002 * 110.75727 * 84.88134 * 19 5 4 37 37 H 1.07995 * 120.78791 * 0.02562 * 21 20 2 38 38 H 1.08000 * 120.41519 * 180.22532 * 22 21 20 39 39 H 1.08006 * 119.61932 * 179.79430 * 23 22 21 40 40 H 1.08005 * 119.61342 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 1 1.2708 0.9486 -2.2996 7 6 3.4471 0.9410 -2.3906 8 6 3.8360 1.0511 -3.8776 9 6 2.6920 0.4002 -4.6822 10 1 1.9795 1.1549 -5.0149 11 6 3.2426 -0.3596 -5.8615 12 1 3.1371 -1.4333 -5.9090 13 6 3.8811 0.3162 -6.8797 14 7 4.3621 -0.3469 -7.9086 15 14 4.0643 2.1734 -6.7971 16 1 5.3347 2.5154 -6.1086 17 1 4.0815 2.7307 -8.1735 18 1 2.9220 2.7504 -6.0438 19 6 2.0242 -0.5699 -3.6763 20 6 2.0324 -0.7104 1.2304 21 6 2.4676 0.0132 2.3305 22 6 2.9170 -0.6827 3.4421 23 6 2.9256 -2.0646 3.4135 24 7 2.5089 -2.7198 2.3478 25 6 2.0709 -2.0910 1.2744 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.9174 -1.1204 -1.0288 30 1 3.3605 1.9343 -1.9503 31 1 4.1936 0.3572 -1.8521 32 1 4.7703 0.5207 -4.0609 33 1 3.9406 2.0992 -4.1583 34 1 4.8116 0.1284 -8.6247 35 1 2.5921 -1.4970 -3.5985 36 1 0.9915 -0.7738 -3.9595 37 1 2.4530 1.0930 2.3229 38 1 3.2598 -0.1517 4.3178 39 1 3.2773 -2.6142 4.2742 40 1 1.7380 -2.6618 0.4201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296359326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:11 Heat of formation + Delta-G solvation = 3.025470 kcal Electronic energy + Delta-G solvation = -19197.609536 eV Core-core repulsion = 16396.523242 eV Total energy + Delta-G solvation = -2801.086293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24058 -39.58270 -36.92005 -34.56435 -33.27356 -32.20957 -30.35232 -29.79723 -28.26248 -25.40088 -24.77563 -24.25650 -21.76914 -21.18616 -20.84585 -18.70893 -18.04903 -17.48781 -17.03382 -16.55830 -16.10730 -15.42412 -15.35242 -15.08707 -14.82180 -14.34155 -14.17492 -14.02354 -13.92875 -13.55471 -13.33104 -13.09934 -12.81252 -12.57933 -12.28758 -12.21348 -11.92141 -11.70519 -11.52208 -11.46256 -11.17095 -10.94917 -10.70659 -10.70194 -10.33867 -9.89157 -9.26585 -8.27251 -6.30120 0.19184 0.37441 1.32923 1.35955 1.46559 2.35696 2.88328 3.07685 3.17144 3.52199 3.80144 3.93206 3.98228 4.03709 4.11416 4.13894 4.21752 4.45906 4.47221 4.60902 4.66160 4.73336 4.83324 4.89211 4.91476 4.97058 5.03891 5.04830 5.11347 5.21800 5.23396 5.28504 5.38352 5.44595 5.54828 5.67214 5.81637 5.84130 6.20746 6.36125 6.47568 6.77563 7.08198 7.35075 8.90104 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.004095 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.132733 B = 6835.757817 C = 6900.651471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.131 3.869 3 H 0.063 0.937 4 N -0.678 5.678 5 C 0.097 3.903 6 H 0.091 0.909 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.003 3.997 10 H 0.031 0.969 11 C -0.512 4.512 12 H 0.028 0.972 13 C 0.008 3.992 14 N -0.956 5.956 15 Si 0.944 3.056 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.242 1.242 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.075 4.075 22 C -0.168 4.168 23 C 0.080 3.920 24 N -0.517 5.517 25 C 0.099 3.901 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.341 0.659 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 5.321 24.851 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.021 3.979 3 H 0.081 0.919 4 N -0.309 5.309 5 C -0.013 4.013 6 H 0.109 0.891 7 C -0.176 4.176 8 C -0.164 4.164 9 C -0.016 4.016 10 H 0.049 0.951 11 C -0.550 4.550 12 H 0.047 0.953 13 C -0.188 4.188 14 N -0.597 5.597 15 Si 0.769 3.231 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.165 1.165 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.187 4.187 23 C -0.077 4.077 24 N -0.226 5.226 25 C -0.058 4.058 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.192 0.808 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.534 4.158 24.551 25.508 hybrid contribution 1.225 1.641 -0.705 2.166 sum -4.309 5.799 23.846 24.916 Atomic orbital electron populations 1.21780 0.93053 1.02268 1.01911 1.20401 0.96317 0.95490 0.85688 0.91867 1.60684 1.33672 1.32710 1.03832 1.22363 0.96173 0.92956 0.89848 0.89095 1.22810 0.97853 1.01258 0.95715 1.22447 0.99641 0.98719 0.95640 1.19950 0.93813 0.94881 0.92958 0.95108 1.21401 1.35457 0.93960 1.04214 0.95333 1.25927 0.94848 1.03399 0.94656 1.70075 1.40558 1.38105 1.10934 0.85852 0.80146 0.80231 0.76862 1.19233 1.22183 1.16511 1.22230 0.99162 0.97634 0.93327 1.21003 1.00973 0.95161 0.97201 1.21839 0.94456 1.01706 0.92099 1.22455 1.00609 0.95463 1.00175 1.23278 0.95240 0.92898 0.96297 1.67731 1.11129 1.42442 1.01254 1.22728 0.95036 0.92188 0.95805 0.92761 0.91283 0.92283 0.83954 0.90655 0.91901 0.93928 0.93791 0.92729 0.93520 0.92705 0.82716 0.81736 0.80763 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.38 71.98 0.68 -1.79 16 2 C 0.13 2.58 2.70 44.17 0.12 2.70 16 3 H 0.06 1.15 7.69 -2.39 -0.02 1.13 16 4 N -0.68 -16.91 5.56 -467.81 -2.60 -19.50 16 5 C 0.10 2.81 2.93 45.99 0.13 2.94 16 6 H 0.09 2.43 7.20 -2.39 -0.02 2.42 16 7 C -0.14 -4.10 6.43 31.39 0.20 -3.90 16 8 C -0.13 -5.05 4.89 31.39 0.15 -4.90 16 9 C 0.00 0.15 2.28 -10.47 -0.02 0.12 16 10 H 0.03 1.41 7.06 -2.39 -0.02 1.39 16 11 C -0.51 -29.64 8.94 25.60 0.23 -29.42 16 12 H 0.03 1.84 8.01 -2.91 -0.02 1.82 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.96 -61.00 13.96 21.45 0.30 -60.70 16 15 Si 0.94 44.79 24.88 68.60 1.71 46.49 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.24 -10.46 6.41 99.48 0.64 -9.82 16 19 C -0.09 -3.29 5.97 31.88 0.19 -3.10 16 20 C -0.14 -2.73 4.72 -19.77 -0.09 -2.83 16 21 C -0.07 -1.14 9.82 22.47 0.22 -0.92 16 22 C -0.17 -2.28 10.11 22.36 0.23 -2.05 16 23 C 0.08 1.38 11.18 84.69 0.95 2.33 16 24 N -0.52 -12.27 10.36 -195.84 -2.03 -14.30 16 25 C 0.10 2.28 10.18 84.67 0.86 3.14 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.14 7.47 -2.39 -0.02 1.13 16 29 H 0.34 8.78 7.38 -89.69 -0.66 8.12 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.79 7.55 -2.39 -0.02 1.77 16 32 H 0.04 1.89 7.83 -2.39 -0.02 1.87 16 33 H 0.04 1.70 6.04 -2.39 -0.01 1.69 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.05 1.95 8.05 -2.38 -0.02 1.93 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.15 3.68 7.72 -2.91 -0.02 3.65 16 Total: -1.00 -68.55 317.44 1.97 -66.58 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.29 Total: 18.18 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 4.30 Total: -36.74 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -4.33 Total: -94.51 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.71 Total: 46.49 kcal Total: -68.55 1.97 -66.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296359326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.606 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds