Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46653 * 2 1 4 4 C 1.50699 * 109.47225 * 240.00642 * 2 1 3 5 5 H 1.08008 * 119.99634 * 239.99745 * 4 2 1 6 6 C 1.37874 * 120.00547 * 59.99603 * 4 2 1 7 7 N 1.31510 * 119.99525 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00288 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47356 * 89.99661 * 8 6 4 10 10 H 1.48492 * 109.46934 * 209.99965 * 8 6 4 11 11 H 1.48498 * 109.46669 * 329.99756 * 8 6 4 12 12 N 1.46894 * 109.47323 * 119.99999 * 2 1 3 13 13 C 1.46982 * 111.00205 * 204.40397 * 12 2 1 14 14 C 1.51623 * 110.93916 * 36.47526 * 13 12 2 15 15 H 1.09000 * 108.56541 * 306.03081 * 14 13 12 16 16 C 1.53008 * 108.56522 * 188.39758 * 14 13 12 17 17 N 1.45601 * 114.11126 * 67.27682 * 14 13 12 18 18 C 1.47001 * 112.36193 * 292.04366 * 17 14 13 19 19 C 1.51484 * 108.36977 * 84.10358 * 18 17 14 20 20 C 1.38089 * 119.91835 * 110.97304 * 19 18 17 21 21 C 1.38377 * 119.66909 * 179.65770 * 20 19 18 22 22 C 1.38306 * 120.17675 * 0.04163 * 21 20 19 23 23 C 1.38156 * 120.19250 * 0.03660 * 22 21 20 24 24 C 1.37998 * 119.71439 * 290.81377 * 19 18 17 25 25 H 1.08998 * 109.47118 * 65.18549 * 1 2 3 26 26 H 1.09007 * 109.47011 * 185.18233 * 1 2 3 27 27 H 1.08998 * 109.47348 * 305.17944 * 1 2 3 28 28 H 0.97002 * 120.00122 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.17373 * 156.83484 * 13 12 2 30 30 H 1.09000 * 109.17937 * 276.11011 * 13 12 2 31 31 H 1.08999 * 109.46467 * 60.00317 * 16 14 13 32 32 H 1.09004 * 109.46543 * 179.97438 * 16 14 13 33 33 H 1.08999 * 109.46969 * 300.00132 * 16 14 13 34 34 H 1.00895 * 111.02199 * 57.02117 * 17 14 13 35 35 H 1.08995 * 109.68467 * 324.38764 * 18 17 14 36 36 H 1.08995 * 109.68468 * 203.82229 * 18 17 14 37 37 H 1.08000 * 120.16532 * 359.67383 * 20 19 18 38 38 H 1.08004 * 119.91307 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.90474 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.20988 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0080 9 1 1.3430 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1122 11 1 3.6294 -1.7580 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.3734 -0.2415 1.5522 14 6 3.5405 1.2398 1.2750 15 1 3.2651 1.4321 0.2381 16 6 5.0146 1.6065 1.4587 17 7 2.7401 2.0998 2.1350 18 6 1.2998 1.9701 1.8711 19 6 0.7769 0.7808 2.6501 20 6 -0.0734 0.9782 3.7201 21 6 -0.5536 -0.1123 4.4236 22 6 -0.1832 -1.3936 4.0578 23 6 0.6687 -1.5920 2.9884 24 6 1.1516 -0.4956 2.2830 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0928 27 1 -0.3634 0.5921 0.8399 28 1 0.7080 1.1609 -3.4843 29 1 3.5487 -0.4296 2.6115 30 1 4.1016 -0.8002 0.9642 31 1 5.6223 1.0276 0.7633 32 1 5.1516 2.6699 1.2623 33 1 5.3199 1.3831 2.4810 34 1 2.9460 1.9311 3.1082 35 1 1.1346 1.8123 0.8054 36 1 0.7846 2.8751 2.1930 37 1 -0.3624 1.9787 4.0062 38 1 -1.2192 0.0375 5.2609 39 1 -0.5610 -2.2417 4.6097 40 1 0.9578 -2.5924 2.7022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300301879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = 70.929707 kcal Electronic energy + Delta-G solvation = -20945.164879 eV Core-core repulsion = 18147.023135 eV Total energy + Delta-G solvation = -2798.141745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75428 -37.25634 -34.76326 -32.96535 -32.38818 -29.92578 -29.35985 -28.12402 -25.16631 -24.79569 -24.05880 -21.83930 -21.67138 -20.53632 -18.90677 -16.49390 -16.22356 -15.58584 -15.16796 -14.79794 -14.69311 -14.31841 -13.80634 -13.72072 -13.21885 -13.13669 -12.65121 -12.23287 -11.88584 -11.65778 -11.50174 -11.20781 -11.06245 -10.98688 -10.83058 -10.71218 -10.56471 -10.41616 -10.25102 -9.98643 -9.59267 -9.15268 -8.65658 -8.38676 -8.21751 -7.88008 -7.16226 -6.03804 -4.07506 1.73336 1.81404 3.29692 3.36428 3.39701 4.11894 4.37531 4.75574 4.81354 5.18799 5.23537 5.26627 5.37642 5.42172 5.61098 5.70548 5.79636 5.89438 5.92447 6.04156 6.14539 6.25519 6.35987 6.40403 6.47156 6.58806 6.59505 6.73538 6.81343 6.84884 6.92441 6.99572 7.09161 7.31240 7.36983 7.49317 7.73821 7.79985 7.86996 8.12716 8.28656 8.56398 8.97416 9.56735 11.02043 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.008201 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.878863 B = 3413.431535 C = 3974.458194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.188 3.812 3 H 0.046 0.954 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.497 5.497 13 C 0.045 3.955 14 C 0.035 3.965 15 H 0.111 0.889 16 C -0.136 4.136 17 N -0.671 5.671 18 C 0.060 3.940 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.108 4.108 24 C 0.125 3.875 25 H 0.090 0.910 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.330 0.670 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 0.590 11.070 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.085 3.915 3 H 0.063 0.937 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.218 5.218 13 C -0.084 4.084 14 C -0.076 4.076 15 H 0.128 0.872 16 C -0.194 4.194 17 N -0.298 5.298 18 C -0.068 4.068 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.127 4.127 24 C 0.031 3.969 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.221 0.745 10.342 10.441 hybrid contribution -0.156 -0.634 -0.216 0.687 sum 1.065 0.111 10.127 10.183 Atomic orbital electron populations 1.22223 0.97991 0.99274 1.01712 1.19971 0.92146 0.94097 0.85304 0.93726 1.21079 1.30690 1.12298 0.89269 0.92012 1.24908 0.95308 0.95154 0.98938 1.69859 1.36951 1.23038 1.23543 0.86506 0.79223 0.79287 0.82462 1.20801 1.21331 1.19920 1.60835 1.00273 1.58283 1.02417 1.22396 0.91747 0.94924 0.99354 1.21850 0.93649 0.91609 1.00517 0.87180 1.21750 0.95245 1.01725 1.00717 1.60330 1.04999 1.55665 1.08819 1.22142 0.87506 0.93699 1.03431 1.21434 0.99602 0.96517 0.97315 1.20933 0.97849 0.98408 0.95772 1.20994 1.01446 0.92850 1.00557 1.20995 0.98676 0.96746 0.97642 1.21108 0.97655 0.98667 0.95315 1.18946 0.95019 0.91094 0.91883 0.89112 0.95075 0.95978 0.92909 0.93203 0.90108 0.92233 0.92279 0.93715 0.85297 0.85515 0.90905 0.86705 0.86908 0.86685 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 7.43 37.16 0.28 -3.47 16 2 C 0.19 4.51 1.04 -68.87 -0.07 4.44 16 3 H 0.05 1.13 2.55 -51.93 -0.13 1.00 16 4 C -0.49 -13.21 8.70 -34.44 -0.30 -13.50 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 7 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.50 -10.55 4.64 -165.70 -0.77 -11.32 16 13 C 0.04 0.83 5.12 -4.48 -0.02 0.81 16 14 C 0.03 0.62 2.45 -69.11 -0.17 0.45 16 15 H 0.11 2.40 5.63 -51.93 -0.29 2.11 16 16 C -0.14 -2.02 9.35 37.16 0.35 -1.67 16 17 N -0.67 -11.39 6.30 -109.14 -0.69 -12.07 16 18 C 0.06 1.09 5.69 -4.54 -0.03 1.07 16 19 C -0.14 -2.58 3.35 -104.38 -0.35 -2.93 16 20 C -0.11 -1.71 9.69 -39.58 -0.38 -2.10 16 21 C -0.14 -2.02 10.05 -39.50 -0.40 -2.41 16 22 C -0.12 -1.82 10.03 -39.59 -0.40 -2.22 16 23 C -0.11 -1.90 9.99 -39.32 -0.39 -2.30 16 24 C 0.13 2.42 3.17 -83.81 -0.27 2.15 16 25 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.49 4.79 -51.93 -0.25 0.24 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.05 0.87 7.77 -51.93 -0.40 0.46 16 30 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.33 5.17 8.50 -39.29 -0.33 4.84 16 35 H 0.13 2.75 3.43 -51.93 -0.18 2.57 16 36 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.11 1.55 7.98 -52.49 -0.42 1.13 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -27.24 299.91 -9.23 -36.47 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.65 Total: 10.60 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.25 Total: -20.22 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.83 Total: -47.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.24 -9.23 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300301879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.396 kcal (2) G-P(sol) polarization free energy of solvation -27.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds