Wall clock time and date at job start Mon Mar 30 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46875 * 2 1 4 4 C 1.50699 * 109.47192 * 120.00496 * 2 1 3 5 5 H 1.07994 * 120.00376 * 120.00046 * 4 2 1 6 6 C 1.37878 * 119.99789 * 299.99743 * 4 2 1 7 7 N 1.31517 * 120.00201 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46803 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47157 * 119.99752 * 8 6 4 11 11 H 1.48493 * 109.47635 * 240.00014 * 8 6 4 12 12 N 1.46901 * 109.46767 * 240.00313 * 2 1 3 13 13 C 1.46954 * 110.99121 * 187.20911 * 12 2 1 14 14 C 1.51625 * 110.99021 * 149.99751 * 13 12 2 15 15 H 1.09006 * 108.56276 * 306.05984 * 14 13 12 16 16 C 1.52994 * 108.56546 * 188.43034 * 14 13 12 17 17 N 1.45678 * 114.05637 * 67.24208 * 14 13 12 18 18 C 1.46994 * 112.39950 * 292.09674 * 17 14 13 19 19 C 1.51471 * 108.37578 * 84.09856 * 18 17 14 20 20 C 1.38098 * 119.91838 * 110.96525 * 19 18 17 21 21 C 1.38380 * 119.67352 * 179.68708 * 20 19 18 22 22 C 1.38308 * 120.17224 * 0.02562 * 21 20 19 23 23 C 1.38156 * 120.19697 * 0.25677 * 22 21 20 24 24 C 1.38000 * 119.72248 * 290.80411 * 19 18 17 25 25 H 1.08996 * 109.47493 * 186.30169 * 1 2 3 26 26 H 1.09006 * 109.46725 * 306.30087 * 1 2 3 27 27 H 1.08998 * 109.47128 * 66.29630 * 1 2 3 28 28 H 0.96996 * 120.00283 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.17689 * 29.60321 * 13 12 2 30 30 H 1.09000 * 109.13147 * 270.36035 * 13 12 2 31 31 H 1.09002 * 109.47078 * 295.49358 * 16 14 13 32 32 H 1.09002 * 109.47489 * 55.49347 * 16 14 13 33 33 H 1.08999 * 109.47254 * 175.49856 * 16 14 13 34 34 H 1.00902 * 110.99787 * 57.07997 * 17 14 13 35 35 H 1.09004 * 109.68176 * 324.37815 * 18 17 14 36 36 H 1.09001 * 109.68529 * 203.82755 * 18 17 14 37 37 H 1.07997 * 120.16070 * 359.69925 * 20 19 18 38 38 H 1.07992 * 119.91560 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.90476 * 180.09221 * 22 21 20 40 40 H 1.07995 * 120.20992 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1485 -2.2858 3.6036 10 1 3.1474 -0.1859 4.8160 11 1 1.1680 -1.5868 4.8164 12 7 2.0196 -0.6924 -1.1995 13 6 3.4784 -0.8629 -1.1504 14 6 3.9045 -2.1133 -1.8947 15 1 3.3453 -2.9607 -1.4981 16 6 5.3929 -2.3524 -1.6332 17 7 3.6908 -2.0493 -3.3343 18 6 2.2642 -2.0353 -3.6887 19 6 1.7634 -0.6087 -3.5968 20 6 1.4129 0.0735 -4.7451 21 6 0.9498 1.3744 -4.6547 22 6 0.8390 1.9887 -3.4205 23 6 1.1949 1.3089 -2.2716 24 6 1.6570 0.0009 -2.3633 25 1 -0.3634 -1.0214 0.1128 26 1 -0.3633 0.6085 0.8283 27 1 -0.3633 0.4131 -0.9409 28 1 0.7091 1.1613 3.4844 29 1 3.7951 -0.9399 -0.1102 30 1 3.9550 0.0050 -1.6062 31 1 5.9727 -1.5334 -2.0588 32 1 5.5696 -2.4028 -0.5588 33 1 5.6968 -3.2914 -2.0959 34 1 4.1710 -1.2582 -3.7363 35 1 1.7074 -2.6653 -2.9950 36 1 2.1349 -2.4051 -4.7058 37 1 1.4995 -0.4059 -5.7089 38 1 0.6749 1.9117 -5.5502 39 1 0.4756 3.0037 -3.3548 40 1 1.1089 1.7885 -1.3077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300301880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:04 Heat of formation + Delta-G solvation = 40.923605 kcal Electronic energy + Delta-G solvation = -20503.493185 eV Core-core repulsion = 17704.050278 eV Total energy + Delta-G solvation = -2799.442907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16015 -36.88391 -35.94456 -32.78041 -32.21516 -29.97366 -29.38671 -28.08884 -25.49441 -24.46071 -24.27101 -22.37649 -20.56138 -20.25796 -19.48032 -17.05373 -16.02541 -15.66216 -14.98984 -14.74929 -14.64785 -14.47075 -13.86670 -13.59798 -13.36584 -12.79964 -12.55265 -12.27539 -11.96791 -11.83156 -11.69123 -11.26603 -11.07870 -11.00379 -10.88562 -10.78467 -10.62050 -10.55533 -10.24268 -10.11612 -9.95802 -9.20452 -8.66580 -8.53965 -8.39359 -7.93484 -7.13751 -6.14039 -4.18816 1.79079 1.86597 3.22546 3.31141 3.34492 4.13385 4.30018 4.68159 4.70962 5.18556 5.20619 5.24680 5.41165 5.52869 5.57396 5.68548 5.69392 5.88952 5.96328 6.09032 6.12835 6.17273 6.29388 6.41997 6.45969 6.50707 6.58778 6.74967 6.78831 6.90257 6.92207 6.98176 7.04235 7.32916 7.41110 7.44570 7.69626 7.71256 7.74558 7.98003 8.17200 8.48317 8.85474 9.46225 10.93339 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.008000 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.768348 B = 3499.041959 C = 4594.695122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.209 3.791 3 H 0.011 0.989 4 C -0.513 4.513 5 H 0.066 0.934 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.487 5.487 13 C 0.032 3.968 14 C 0.085 3.915 15 H 0.083 0.917 16 C -0.141 4.141 17 N -0.677 5.677 18 C 0.112 3.888 19 C -0.149 4.149 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.107 4.107 23 C -0.161 4.161 24 C 0.132 3.868 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.262 0.738 29 H 0.107 0.893 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.334 0.666 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -1.303 -10.972 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.104 3.896 3 H 0.029 0.971 4 C -0.551 4.551 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.202 5.202 13 C -0.095 4.095 14 C -0.026 4.026 15 H 0.101 0.899 16 C -0.199 4.199 17 N -0.305 5.305 18 C -0.017 4.017 19 C -0.153 4.153 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.126 4.126 23 C -0.181 4.181 24 C 0.033 3.967 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.233 -2.415 -10.814 11.542 hybrid contribution 0.072 1.424 1.217 1.875 sum 3.304 -0.991 -9.597 10.198 Atomic orbital electron populations 1.21908 0.97155 1.00727 0.99474 1.19440 0.92767 0.92483 0.84934 0.97145 1.21124 1.31703 1.12632 0.89636 0.91554 1.24915 0.94961 0.94981 0.99079 1.69906 1.36429 1.22793 1.23587 0.86447 0.78677 0.79631 0.82740 1.19617 1.21034 1.20922 1.59734 1.11298 1.47287 1.01903 1.22589 0.86720 0.96589 1.03642 1.21160 0.96221 0.98297 0.86940 0.89926 1.21795 0.95210 1.01487 1.01424 1.60429 1.10895 1.47962 1.11177 1.21028 0.87957 0.91650 1.01036 1.20353 1.04516 0.98228 0.92175 1.20836 0.99251 0.94591 0.97126 1.20935 1.03823 0.95765 0.97115 1.20999 0.99599 0.99415 0.92544 1.21830 1.02715 0.94048 0.99522 1.19036 0.96131 0.90293 0.91197 0.94642 0.89852 0.96429 0.92848 0.87475 0.95622 0.93294 0.92081 0.92227 0.84817 0.89819 0.90908 0.86582 0.87041 0.86899 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.41 37.16 0.31 -2.97 16 2 C 0.21 5.09 1.57 -68.86 -0.11 4.98 16 3 H 0.01 0.29 6.39 -51.93 -0.33 -0.04 16 4 C -0.51 -13.42 7.49 -34.44 -0.26 -13.68 16 5 H 0.07 1.73 6.54 -52.49 -0.34 1.38 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.53 11.39 55.43 0.63 -23.90 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.49 -10.33 4.11 -165.72 -0.68 -11.01 16 13 C 0.03 0.61 4.39 -4.49 -0.02 0.59 16 14 C 0.08 1.37 2.73 -69.07 -0.19 1.18 16 15 H 0.08 1.47 7.91 -51.93 -0.41 1.06 16 16 C -0.14 -1.93 9.37 37.15 0.35 -1.58 16 17 N -0.68 -10.09 6.30 -109.09 -0.69 -10.78 16 18 C 0.11 1.72 6.19 -4.55 -0.03 1.69 16 19 C -0.15 -2.51 5.15 -104.38 -0.54 -3.04 16 20 C -0.10 -1.46 9.69 -39.58 -0.38 -1.84 16 21 C -0.16 -2.31 10.05 -39.50 -0.40 -2.71 16 22 C -0.11 -1.74 10.03 -39.59 -0.40 -2.13 16 23 C -0.16 -3.10 7.29 -39.32 -0.29 -3.39 16 24 C 0.13 2.58 4.48 -83.80 -0.38 2.21 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 2.19 6.27 -51.93 -0.33 1.86 16 27 H 0.02 0.39 5.68 -51.93 -0.30 0.09 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.11 2.25 5.45 -51.93 -0.28 1.96 16 30 H 0.03 0.49 7.76 -51.93 -0.40 0.09 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.33 4.83 8.51 -39.29 -0.33 4.50 16 35 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 36 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 37 H 0.12 1.41 7.98 -52.49 -0.42 0.99 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.14 2.86 5.29 -52.49 -0.28 2.58 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -27.01 305.20 -9.48 -36.48 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.91 Total: 8.05 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.41 Total: -19.11 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.74 Total: -45.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.01 -9.48 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300301880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.409 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds