Wall clock time and date at job start Mon Mar 30 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46875 * 2 1 4 4 C 1.50699 * 109.47192 * 120.00496 * 2 1 3 5 5 H 1.07994 * 120.00376 * 120.00046 * 4 2 1 6 6 C 1.37878 * 119.99789 * 299.99743 * 4 2 1 7 7 N 1.31517 * 120.00201 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46803 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47157 * 119.99752 * 8 6 4 11 11 H 1.48493 * 109.47635 * 240.00014 * 8 6 4 12 12 N 1.46901 * 109.46767 * 240.00313 * 2 1 3 13 13 C 1.46954 * 110.99121 * 187.20911 * 12 2 1 14 14 C 1.51625 * 110.99021 * 149.99751 * 13 12 2 15 15 H 1.09006 * 108.56276 * 306.05984 * 14 13 12 16 16 C 1.52994 * 108.56546 * 188.43034 * 14 13 12 17 17 N 1.45678 * 114.05637 * 67.24208 * 14 13 12 18 18 C 1.46994 * 112.39950 * 292.09674 * 17 14 13 19 19 C 1.51471 * 108.37578 * 84.09856 * 18 17 14 20 20 C 1.38098 * 119.91838 * 110.96525 * 19 18 17 21 21 C 1.38380 * 119.67352 * 179.68708 * 20 19 18 22 22 C 1.38308 * 120.17224 * 0.02562 * 21 20 19 23 23 C 1.38156 * 120.19697 * 0.25677 * 22 21 20 24 24 C 1.38000 * 119.72248 * 290.80411 * 19 18 17 25 25 H 1.08996 * 109.47493 * 186.30169 * 1 2 3 26 26 H 1.09006 * 109.46725 * 306.30087 * 1 2 3 27 27 H 1.08998 * 109.47128 * 66.29630 * 1 2 3 28 28 H 0.96996 * 120.00283 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.17689 * 29.60321 * 13 12 2 30 30 H 1.09000 * 109.13147 * 270.36035 * 13 12 2 31 31 H 1.09002 * 109.47078 * 295.49358 * 16 14 13 32 32 H 1.09002 * 109.47489 * 55.49347 * 16 14 13 33 33 H 1.08999 * 109.47254 * 175.49856 * 16 14 13 34 34 H 1.00902 * 110.99787 * 57.07997 * 17 14 13 35 35 H 1.09004 * 109.68176 * 324.37815 * 18 17 14 36 36 H 1.09001 * 109.68529 * 203.82755 * 18 17 14 37 37 H 1.07997 * 120.16070 * 359.69925 * 20 19 18 38 38 H 1.07992 * 119.91560 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.90476 * 180.09221 * 22 21 20 40 40 H 1.07995 * 120.20992 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1485 -2.2858 3.6036 10 1 3.1474 -0.1859 4.8160 11 1 1.1680 -1.5868 4.8164 12 7 2.0196 -0.6924 -1.1995 13 6 3.4784 -0.8629 -1.1504 14 6 3.9045 -2.1133 -1.8947 15 1 3.3453 -2.9607 -1.4981 16 6 5.3929 -2.3524 -1.6332 17 7 3.6908 -2.0493 -3.3343 18 6 2.2642 -2.0353 -3.6887 19 6 1.7634 -0.6087 -3.5968 20 6 1.4129 0.0735 -4.7451 21 6 0.9498 1.3744 -4.6547 22 6 0.8390 1.9887 -3.4205 23 6 1.1949 1.3089 -2.2716 24 6 1.6570 0.0009 -2.3633 25 1 -0.3634 -1.0214 0.1128 26 1 -0.3633 0.6085 0.8283 27 1 -0.3633 0.4131 -0.9409 28 1 0.7091 1.1613 3.4844 29 1 3.7951 -0.9399 -0.1102 30 1 3.9550 0.0050 -1.6062 31 1 5.9727 -1.5334 -2.0588 32 1 5.5696 -2.4028 -0.5588 33 1 5.6968 -3.2914 -2.0959 34 1 4.1710 -1.2582 -3.7363 35 1 1.7074 -2.6653 -2.9950 36 1 2.1349 -2.4051 -4.7058 37 1 1.4995 -0.4059 -5.7089 38 1 0.6749 1.9117 -5.5502 39 1 0.4756 3.0037 -3.3548 40 1 1.1089 1.7885 -1.3077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300301880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:03 Heat of formation + Delta-G solvation = 24.267804 kcal Electronic energy + Delta-G solvation = -20504.215435 eV Core-core repulsion = 17704.050278 eV Total energy + Delta-G solvation = -2800.165157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59318 -38.22852 -37.49752 -34.70286 -33.48786 -31.46843 -31.07547 -29.43963 -27.37728 -26.02618 -25.57180 -23.91103 -21.96452 -21.71453 -21.02947 -18.75844 -17.70325 -17.29919 -16.49749 -16.20187 -15.99547 -15.95046 -15.41473 -15.12709 -14.74952 -14.22515 -14.02095 -13.83196 -13.53794 -13.14984 -13.03061 -12.93644 -12.80640 -12.69470 -12.50878 -12.35350 -12.15772 -12.03354 -11.87378 -11.84302 -11.55667 -11.08392 -10.61557 -10.11741 -9.81468 -9.23813 -8.68879 -8.19362 -6.30813 0.48551 0.53903 1.37745 1.40100 1.51444 2.36609 2.81371 3.08241 3.18697 3.45001 3.94629 3.99830 4.14488 4.18032 4.23655 4.38498 4.46680 4.60699 4.67280 4.74765 4.77198 4.79564 4.93894 4.96643 5.01307 5.01737 5.08753 5.21265 5.22467 5.29358 5.39163 5.51154 5.59305 5.66310 5.71373 5.75902 6.04455 6.12852 6.16541 6.27824 6.51576 6.75809 6.81903 7.37746 8.87844 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.008000 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.768348 B = 3499.041959 C = 4594.695122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.219 3.781 3 H -0.023 1.023 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.492 5.492 13 C 0.037 3.963 14 C 0.094 3.906 15 H 0.065 0.935 16 C -0.133 4.133 17 N -0.664 5.664 18 C 0.115 3.885 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.188 4.188 24 C 0.100 3.900 25 H 0.022 0.978 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.082 0.918 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.341 0.659 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -2.145 -13.593 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H -0.005 1.005 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.208 5.208 13 C -0.090 4.090 14 C -0.018 4.018 15 H 0.083 0.917 16 C -0.191 4.191 17 N -0.292 5.292 18 C -0.014 4.014 19 C -0.156 4.156 20 C -0.108 4.108 21 C -0.164 4.164 22 C -0.129 4.129 23 C -0.209 4.209 24 C 0.002 3.998 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.937 -3.258 -13.463 14.400 hybrid contribution -0.174 1.770 1.903 2.605 sum 3.762 -1.488 -11.561 12.248 Atomic orbital electron populations 1.21678 0.97441 0.99273 0.99091 1.19117 0.92444 0.90848 0.86286 1.00537 1.21392 1.31609 1.12558 0.90689 0.91833 1.25710 0.95158 0.95665 1.01946 1.70034 1.37443 1.24043 1.24184 0.85454 0.78155 0.78702 0.79058 1.18829 1.20564 1.20711 1.59768 1.12307 1.47243 1.01477 1.22596 0.85894 0.97971 1.02566 1.21039 0.97608 0.95652 0.87483 0.91675 1.21733 0.93226 1.02684 1.01498 1.60473 1.10841 1.48013 1.09842 1.21095 0.87639 0.90452 1.02217 1.20581 1.04330 0.99012 0.91666 1.21293 0.97140 0.94493 0.97837 1.21387 1.01693 0.95808 0.97487 1.21258 0.99017 1.00236 0.92340 1.21690 1.05134 0.94679 0.99378 1.19235 0.98130 0.90830 0.91601 0.95833 0.92172 0.95232 0.92815 0.90017 0.96291 0.92265 0.92453 0.90613 0.84064 0.92011 0.87635 0.82618 0.83142 0.85068 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.41 71.98 0.61 -5.41 16 2 C 0.22 11.34 1.57 44.17 0.07 11.41 16 3 H -0.02 -1.31 6.39 -2.39 -0.02 -1.32 16 4 C -0.52 -28.69 7.49 25.60 0.19 -28.50 16 5 H 0.06 3.44 6.54 -2.91 -0.02 3.42 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.76 11.39 21.45 0.24 -52.52 16 8 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 N -0.49 -21.72 4.11 -678.21 -2.78 -24.51 16 13 C 0.04 1.47 4.39 85.84 0.38 1.85 16 14 C 0.09 2.99 2.73 44.69 0.12 3.11 16 15 H 0.06 2.33 7.91 -2.38 -0.02 2.31 16 16 C -0.13 -3.46 9.37 71.98 0.67 -2.79 16 17 N -0.66 -18.41 6.30 -499.07 -3.15 -21.56 16 18 C 0.11 3.26 6.19 85.78 0.53 3.79 16 19 C -0.15 -4.82 5.15 -19.71 -0.10 -4.92 16 20 C -0.09 -2.25 9.69 22.27 0.22 -2.03 16 21 C -0.15 -3.68 10.05 22.32 0.22 -3.45 16 22 C -0.11 -3.42 10.03 22.27 0.22 -3.20 16 23 C -0.19 -7.47 7.29 22.44 0.16 -7.30 16 24 C 0.10 3.95 4.48 37.93 0.17 4.12 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 3.35 6.27 -2.38 -0.01 3.33 16 27 H 0.03 1.40 5.68 -2.39 -0.01 1.38 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.08 3.61 5.45 -2.38 -0.01 3.60 16 30 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.52 8.07 -2.39 -0.02 1.51 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.34 8.95 8.51 -89.69 -0.76 8.18 16 35 H 0.06 2.05 7.74 -2.39 -0.02 2.03 16 36 H 0.11 2.33 7.93 -2.39 -0.02 2.31 16 37 H 0.16 2.77 7.98 -2.91 -0.02 2.75 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.10 4.64 5.29 -2.91 -0.02 4.63 16 Total: -1.00 -61.23 305.20 0.53 -60.70 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.27 Total: 24.57 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.92 Total: -32.08 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -5.69 Total: -98.58 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.23 0.53 -60.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300301880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.969 kcal (2) G-P(sol) polarization free energy of solvation -61.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds