Wall clock time and date at job start Mon Mar 30 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99925 * 2 1 4 4 C 1.50699 * 109.46976 * 269.99911 * 3 2 1 5 5 H 1.08006 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99940 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00002 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00049 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47341 * 89.99823 * 8 6 4 10 10 H 1.48504 * 109.47173 * 209.99958 * 8 6 4 11 11 H 1.48496 * 109.47141 * 329.99615 * 8 6 4 12 12 C 1.38549 * 119.99791 * 180.02562 * 2 1 3 13 13 C 1.39568 * 120.51830 * 5.02032 * 12 2 1 14 14 C 1.38271 * 118.35725 * 179.97438 * 13 12 2 15 15 Cl 1.73600 * 120.41115 * 179.97438 * 14 13 12 16 16 N 1.32683 * 119.18358 * 359.97438 * 14 13 12 17 17 C 1.31889 * 120.97252 * 359.97438 * 16 14 13 18 18 Cl 1.73604 * 119.09559 * 180.28427 * 17 16 14 19 19 N 1.31904 * 121.81063 * 0.02562 * 17 16 14 20 20 H 1.09004 * 109.47101 * 270.00260 * 1 2 3 21 21 H 1.09004 * 109.47446 * 29.99743 * 1 2 3 22 22 H 1.09002 * 109.47370 * 150.00100 * 1 2 3 23 23 H 1.08996 * 109.47092 * 30.00250 * 3 2 1 24 24 H 1.09001 * 109.47030 * 150.00387 * 3 2 1 25 25 H 0.97002 * 120.00139 * 179.97438 * 7 6 4 26 26 H 1.08005 * 120.82031 * 359.95630 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7350 3.9279 -0.2530 9 1 5.1083 3.5057 0.1225 10 1 3.7509 5.3548 -0.6643 11 1 2.8293 3.7586 0.9115 12 6 2.1577 -1.1999 -0.0005 13 6 1.4748 -2.4125 -0.1063 14 6 2.2106 -3.5831 -0.1028 15 17 1.4157 -5.1211 -0.2309 16 7 3.5318 -3.5165 -0.0003 17 6 4.1473 -2.3541 0.0970 18 17 5.8786 -2.3234 0.2213 19 7 3.4839 -1.2140 0.0976 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8224 4.0832 -3.0900 26 1 0.3981 -2.4358 -0.1885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306155055.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:35 Heat of formation + Delta-G solvation = 51.158098 kcal Electronic energy + Delta-G solvation = -15002.540158 eV Core-core repulsion = 12168.892173 eV Total energy + Delta-G solvation = -2833.647985 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.013 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.73200 -37.15390 -36.89039 -36.26216 -32.96126 -32.66769 -31.02177 -28.62007 -26.30679 -24.12595 -23.16010 -21.11031 -17.89426 -17.52075 -17.06257 -15.65993 -15.32310 -15.02007 -14.83875 -14.30850 -13.95124 -13.38499 -12.56433 -12.50211 -12.10159 -11.73810 -11.66561 -11.48003 -11.19343 -11.06053 -10.71805 -10.60023 -10.49748 -10.10877 -9.63199 -9.33549 -9.08417 -8.68899 -7.48480 -6.19003 -4.19883 0.96728 1.35434 1.42838 1.96721 3.20273 3.25098 3.29108 3.33939 3.89309 4.30083 4.63740 4.78816 5.10724 5.13300 5.31375 5.48813 5.63496 5.84151 6.00003 6.42059 6.72642 6.91584 7.42588 7.48388 7.64581 8.24308 8.37906 8.82663 9.39311 10.93947 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.006855 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.218777 B = 4083.408544 C = 4957.964803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.559 5.559 3 C 0.217 3.783 4 C -0.534 4.534 5 H 0.074 0.926 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.475 3.525 13 C -0.290 4.290 14 C 0.263 3.737 15 Cl -0.022 7.022 16 N -0.565 5.565 17 C 0.428 3.572 18 Cl 0.023 6.977 19 N -0.543 5.543 20 H 0.054 0.946 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.266 0.734 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -10.997 7.610 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.265 5.265 3 C 0.096 3.904 4 C -0.573 4.573 5 H 0.092 0.908 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.229 3.771 13 C -0.321 4.321 14 C 0.095 3.905 15 Cl 0.006 6.994 16 N -0.292 5.292 17 C 0.131 3.869 18 Cl 0.050 6.950 19 N -0.270 5.270 20 H 0.072 0.928 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.338 -10.686 7.568 13.513 hybrid contribution -0.321 0.475 0.388 0.692 sum -3.660 -10.211 7.955 13.452 Atomic orbital electron populations 1.21826 0.78530 1.03802 1.01264 1.46871 1.05502 1.03697 1.70439 1.19907 0.92695 0.78869 0.98882 1.21239 1.37684 1.07530 0.90842 0.90773 1.24819 0.95036 0.97214 0.95590 1.69887 1.40968 1.23515 1.18696 0.86872 0.80308 0.79874 0.82767 1.19613 1.21005 1.19089 1.18164 0.86659 0.86525 0.85789 1.21815 1.02722 0.90701 1.16818 1.21196 0.88630 0.87334 0.93382 1.98400 1.76771 1.28546 1.95688 1.67058 1.09314 1.28982 1.23861 1.22220 0.89345 0.83449 0.91858 1.98418 1.02727 1.98268 1.95553 1.67432 1.07638 1.29114 1.22852 0.92752 0.89535 0.91472 0.94773 0.93490 0.92382 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 10.31 59.85 0.62 1.86 15 2 N -0.56 -10.68 2.96 -182.94 -0.54 -11.22 15 3 C 0.22 4.89 4.30 -5.20 -0.02 4.87 15 4 C -0.53 -14.46 9.94 -34.44 -0.34 -14.80 15 5 H 0.07 2.23 8.06 -52.48 -0.42 1.81 15 6 C 0.08 2.13 5.47 -17.82 -0.10 2.04 15 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 15 8 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 15 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.27 -5.86 6.54 56.52 0.37 -5.49 15 12 C 0.47 9.06 7.39 -154.79 -1.14 7.92 15 13 C -0.29 -4.57 9.13 -39.07 -0.36 -4.92 15 14 C 0.26 4.20 7.33 -17.17 -0.13 4.07 15 15 Cl -0.02 -0.29 29.15 -51.86 -1.51 -1.80 15 16 N -0.57 -10.07 10.40 -8.84 -0.09 -10.17 15 17 C 0.43 8.09 8.18 -91.98 -0.75 7.34 15 18 Cl 0.02 0.37 29.27 -51.86 -1.52 -1.14 15 19 N -0.54 -11.30 9.20 -10.88 -0.10 -11.40 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.09 1.23 8.07 -51.93 -0.42 0.82 15 22 H 0.07 0.78 6.04 -51.93 -0.31 0.47 15 23 H 0.03 0.74 7.13 -51.93 -0.37 0.37 15 24 H 0.05 1.12 6.76 -51.93 -0.35 0.77 15 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 26 H 0.15 1.93 6.15 -52.48 -0.32 1.61 15 LS Contribution 263.86 15.07 3.98 3.98 Total: -1.00 -30.18 263.86 -7.69 -37.88 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -1.79 Total: -4.59 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.22 Total: 8.37 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.04 Total: -58.59 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -3.03 Total: -2.94 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.18 -7.69 -37.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306155055.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.038 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds