Wall clock time and date at job start Mon Mar 30 2020 07:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99925 * 2 1 4 4 C 1.50699 * 109.46976 * 269.99911 * 3 2 1 5 5 H 1.08006 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99940 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00002 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00049 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47341 * 89.99823 * 8 6 4 10 10 H 1.48504 * 109.47173 * 209.99958 * 8 6 4 11 11 H 1.48496 * 109.47141 * 329.99615 * 8 6 4 12 12 C 1.38549 * 119.99791 * 180.02562 * 2 1 3 13 13 C 1.39568 * 120.51830 * 5.02032 * 12 2 1 14 14 C 1.38271 * 118.35725 * 179.97438 * 13 12 2 15 15 Cl 1.73600 * 120.41115 * 179.97438 * 14 13 12 16 16 N 1.32683 * 119.18358 * 359.97438 * 14 13 12 17 17 C 1.31889 * 120.97252 * 359.97438 * 16 14 13 18 18 Cl 1.73604 * 119.09559 * 180.28427 * 17 16 14 19 19 N 1.31904 * 121.81063 * 0.02562 * 17 16 14 20 20 H 1.09004 * 109.47101 * 270.00260 * 1 2 3 21 21 H 1.09004 * 109.47446 * 29.99743 * 1 2 3 22 22 H 1.09002 * 109.47370 * 150.00100 * 1 2 3 23 23 H 1.08996 * 109.47092 * 30.00250 * 3 2 1 24 24 H 1.09001 * 109.47030 * 150.00387 * 3 2 1 25 25 H 0.97002 * 120.00139 * 179.97438 * 7 6 4 26 26 H 1.08005 * 120.82031 * 359.95630 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7350 3.9279 -0.2530 9 1 5.1083 3.5057 0.1225 10 1 3.7509 5.3548 -0.6643 11 1 2.8293 3.7586 0.9115 12 6 2.1577 -1.1999 -0.0005 13 6 1.4748 -2.4125 -0.1063 14 6 2.2106 -3.5831 -0.1028 15 17 1.4157 -5.1211 -0.2309 16 7 3.5318 -3.5165 -0.0003 17 6 4.1473 -2.3541 0.0970 18 17 5.8786 -2.3234 0.2213 19 7 3.4839 -1.2140 0.0976 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8224 4.0832 -3.0900 26 1 0.3981 -2.4358 -0.1885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306155055.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:34 Heat of formation + Delta-G solvation = 32.341416 kcal Electronic energy + Delta-G solvation = -15003.356111 eV Core-core repulsion = 12168.892173 eV Total energy + Delta-G solvation = -2834.463938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.013 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09620 -38.53262 -38.12083 -37.57841 -34.86522 -34.16271 -32.49699 -30.27122 -27.68315 -25.60108 -24.73586 -22.68029 -19.24049 -19.10841 -18.96365 -16.93719 -16.74466 -16.53156 -16.32678 -15.88601 -15.36355 -14.83184 -14.38295 -13.77660 -13.63690 -13.24653 -12.98213 -12.82805 -12.63672 -12.46484 -12.37379 -12.09273 -11.86082 -11.78591 -11.61129 -10.80830 -10.66866 -10.49378 -8.91769 -8.31754 -6.37285 -0.35621 0.05216 0.06843 0.69391 1.36383 1.40501 1.47294 1.91901 2.32901 2.51960 3.03779 3.28169 3.45512 3.92466 4.01276 4.32839 4.57203 4.63468 4.79997 4.91405 5.00424 5.44271 5.46714 5.91619 6.22615 6.31151 6.64389 6.89246 7.26551 8.84878 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.006855 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.218777 B = 4083.408544 C = 4957.964803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.572 5.572 3 C 0.228 3.772 4 C -0.532 4.532 5 H 0.028 0.972 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.237 1.237 12 C 0.454 3.546 13 C -0.272 4.272 14 C 0.253 3.747 15 Cl 0.012 6.988 16 N -0.570 5.570 17 C 0.414 3.586 18 Cl 0.032 6.968 19 N -0.581 5.581 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.267 0.733 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -11.765 9.377 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.279 5.279 3 C 0.106 3.894 4 C -0.570 4.570 5 H 0.046 0.954 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.766 3.234 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.160 1.160 12 C 0.209 3.791 13 C -0.302 4.302 14 C 0.086 3.914 15 Cl 0.040 6.960 16 N -0.297 5.297 17 C 0.118 3.882 18 Cl 0.060 6.940 19 N -0.309 5.309 20 H 0.104 0.896 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.592 -11.504 9.351 15.520 hybrid contribution 0.002 0.538 -0.237 0.588 sum -4.589 -10.966 9.114 14.979 Atomic orbital electron populations 1.22121 0.75625 1.04609 1.03523 1.46885 1.07162 1.02540 1.71270 1.19530 0.93202 0.81078 0.95600 1.21464 1.36722 1.06698 0.92141 0.95410 1.25765 0.95312 0.98866 0.98306 1.70048 1.42682 1.24439 1.21347 0.85783 0.79887 0.77670 0.80038 1.19838 1.20686 1.15955 1.18527 0.86574 0.87589 0.86414 1.22067 1.04221 0.89230 1.14687 1.21550 0.88243 0.88945 0.92703 1.98413 1.75895 1.26260 1.95414 1.67160 1.10360 1.28428 1.23716 1.22389 0.89974 0.83515 0.92321 1.98409 1.01842 1.98270 1.95504 1.67361 1.09045 1.30392 1.24136 0.89607 0.90363 0.89130 0.92927 0.94567 0.92352 0.79299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.31 127.77 1.32 3.39 15 2 N -0.57 -21.02 2.96 -732.70 -2.17 -23.18 15 3 C 0.23 10.08 4.30 85.63 0.37 10.45 15 4 C -0.53 -29.24 9.94 25.60 0.25 -28.99 15 5 H 0.03 1.74 8.06 -2.91 -0.02 1.71 15 6 C 0.02 0.89 5.47 84.65 0.46 1.35 15 7 N -0.95 -57.89 13.96 21.45 0.30 -57.59 15 8 Si 0.94 42.22 27.47 68.60 1.88 44.10 15 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 11 H -0.24 -9.37 6.54 99.48 0.65 -8.72 15 12 C 0.45 16.78 7.39 133.15 0.98 17.76 15 13 C -0.27 -7.91 9.13 22.60 0.21 -7.71 15 14 C 0.25 7.54 7.33 84.57 0.62 8.16 15 15 Cl 0.01 0.26 29.15 -2.72 -0.08 0.18 15 16 N -0.57 -19.61 10.40 -181.87 -1.89 -21.50 15 17 C 0.41 15.50 8.18 180.82 1.48 16.98 15 18 Cl 0.03 1.05 29.27 -2.72 -0.08 0.97 15 19 N -0.58 -24.01 9.20 -188.34 -1.73 -25.74 15 20 H 0.09 1.63 8.14 -2.38 -0.02 1.62 15 21 H 0.08 2.09 8.07 -2.39 -0.02 2.08 15 22 H 0.09 1.81 6.04 -2.39 -0.01 1.79 15 23 H 0.05 2.14 7.13 -2.39 -0.02 2.12 15 24 H 0.04 1.69 6.76 -2.39 -0.02 1.67 15 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 26 H 0.19 3.97 6.15 -2.91 -0.02 3.96 15 Total: -1.00 -66.85 263.86 3.09 -63.76 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: 1.17 Total: -2.41 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.69 Total: 21.40 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.49 Total: -128.02 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 17 Polarization: 1.32 SS G_CDS: -0.16 Total: 1.16 kcal Total: -66.85 3.09 -63.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306155055.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.105 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds