Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.33368 * 122.53442 * 269.70659 * 11 10 9 13 13 S 1.75882 * 109.61367 * 179.87377 * 12 11 10 14 14 C 1.75883 * 90.97543 * 0.33026 * 13 12 11 15 15 Br 1.89099 * 125.20436 * 179.77944 * 14 13 12 16 16 C 1.33472 * 109.59125 * 359.81693 * 14 13 12 17 17 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 18 18 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 19 19 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 20 20 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 21 21 H 1.07998 * 125.18976 * 359.97438 * 12 11 10 22 22 H 1.08000 * 122.55672 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6163 -5.3454 1.1396 13 16 -0.5019 -6.6465 0.7524 14 6 -0.2647 -6.3786 -0.9696 15 35 -1.0992 -7.3636 -2.3513 16 6 0.5951 -5.3741 -1.1519 17 1 -0.4850 0.8401 -0.0004 18 1 0.3555 -2.3880 0.0005 19 1 2.6849 -3.7190 -0.8822 20 1 2.6842 -3.7101 0.8977 21 1 0.8861 -5.0328 2.1375 22 1 0.8908 -5.0330 -2.1331 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306451805.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 26.534194 kcal Electronic energy + Delta-G solvation = -9984.267285 eV Core-core repulsion = 7904.874796 eV Total energy + Delta-G solvation = -2079.392489 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48235 -36.15485 -33.51491 -32.41654 -29.70849 -27.73317 -25.02922 -23.15872 -20.13434 -19.25805 -18.32811 -16.77458 -16.30967 -15.33030 -15.05402 -14.47935 -14.28748 -14.10026 -13.29107 -13.17346 -12.91034 -12.68611 -12.20083 -12.01275 -11.80798 -11.72040 -11.32282 -10.95438 -9.68053 -9.39918 -9.01654 -7.93944 -5.24226 -0.23729 0.05970 0.73318 0.88494 1.47977 1.52685 1.54334 1.59769 2.59089 3.39335 4.05563 4.15166 4.24509 4.40123 4.73082 4.80188 4.91188 5.21788 5.49692 5.50945 6.26426 7.33414 8.06266 8.31361 9.29131 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.042647 B = 0.005066 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.395911 B = 5526.160044 C = 5851.157127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.740 5.740 10 C 0.209 3.791 11 C -0.119 4.119 12 C -0.183 4.183 13 S 0.183 5.817 14 C -0.222 4.222 15 Br 0.015 6.985 16 C -0.081 4.081 17 H 0.251 0.749 18 H 0.373 0.627 19 H 0.034 0.966 20 H 0.038 0.962 21 H 0.183 0.817 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -18.092 -1.784 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.080 3.920 11 C -0.132 4.132 12 C -0.320 4.320 13 S 0.447 5.553 14 C -0.418 4.418 15 Br 0.098 6.902 16 C -0.115 4.115 17 H 0.060 0.940 18 H 0.205 0.795 19 H 0.051 0.949 20 H 0.056 0.944 21 H 0.200 0.800 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.553 -19.399 -1.436 19.619 hybrid contribution 0.956 2.276 -0.612 2.544 sum -1.597 -17.122 -2.048 17.318 Atomic orbital electron populations 1.69835 1.06730 1.26192 1.59273 1.25627 0.96418 1.01277 1.03538 0.85157 0.77127 0.78836 0.78285 1.20317 1.22272 1.20169 1.19638 0.91667 0.85042 1.41559 0.90195 1.42550 1.05581 1.00635 1.89511 1.19433 0.91538 0.81941 0.99057 1.19029 1.02345 0.99561 0.92250 1.25968 1.02092 1.00778 1.03210 1.83871 1.43428 1.33055 0.94992 1.26117 1.09872 1.07028 0.98826 1.96651 1.78561 1.70454 1.44501 1.20164 0.96425 0.94455 1.00470 0.94010 0.79502 0.94859 0.94371 0.80014 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.75 13.06 21.65 0.28 -59.47 14 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 14 3 Si 0.98 45.90 29.55 68.60 2.03 47.93 14 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 14 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 14 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 14 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 14 9 N -0.74 -37.81 5.59 -347.18 -1.94 -39.76 14 10 C 0.21 8.32 6.51 85.63 0.56 8.88 14 11 C -0.12 -4.03 5.17 -20.91 -0.11 -4.14 14 12 C -0.18 -5.33 10.97 66.72 0.73 -4.60 14 13 S 0.18 4.56 23.34 -56.49 -1.32 3.24 14 14 C -0.22 -6.24 6.97 66.74 0.46 -5.77 14 15 Br 0.01 0.35 34.07 -20.37 -0.69 -0.34 14 16 C -0.08 -2.57 9.91 21.24 0.21 -2.36 14 17 H 0.25 15.02 8.31 -92.71 -0.77 14.25 14 18 H 0.37 20.63 7.66 -92.71 -0.71 19.92 14 19 H 0.03 1.31 8.13 -2.38 -0.02 1.30 14 20 H 0.04 1.47 8.12 -2.39 -0.02 1.45 14 21 H 0.18 4.75 8.06 -2.91 -0.02 4.73 14 22 H 0.14 4.54 8.06 -2.91 -0.02 4.51 14 Total: -1.00 -61.77 238.12 2.05 -59.72 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.53 Total: 13.50 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 3.16 Total: -24.83 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -1.66 Total: -99.22 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.32 Total: 3.24 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -0.69 Total: -0.34 kcal Total: -61.77 2.05 -59.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306451805.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.258 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds