Wall clock time and date at job start Mon Mar 30 2020 07:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29501 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48505 * 109.46761 * 274.23873 * 3 2 1 5 5 H 1.48503 * 109.47522 * 34.23622 * 3 2 1 6 6 H 1.48500 * 109.47340 * 154.24264 * 3 2 1 7 7 C 1.46561 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99865 * 341.50089 * 7 2 1 9 9 C 1.40178 * 119.99702 * 161.22421 * 7 2 1 10 10 C 1.41390 * 120.26861 * 334.49877 * 9 7 2 11 11 C 1.36370 * 119.73524 * 180.02562 * 10 9 7 12 12 C 1.39037 * 120.29065 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 119.72394 * 180.02562 * 12 11 10 14 14 C 1.39145 * 120.54758 * 0.02562 * 12 11 10 15 15 Cl 1.73598 * 119.86865 * 180.02562 * 14 12 11 16 16 C 1.36488 * 120.25514 * 359.75139 * 14 12 11 17 17 N 1.48020 * 120.14838 * 180.27930 * 16 14 12 18 18 O 1.31694 * 120.00352 * 270.21758 * 17 16 14 19 19 O 1.31702 * 119.99943 * 90.21897 * 17 16 14 20 20 H 0.96999 * 119.99839 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.13060 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.85498 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.3869 2.0980 -1.3963 5 1 1.4742 2.6252 0.7877 6 1 3.5686 1.4159 0.6084 7 6 2.0278 -1.2693 0.0006 8 1 1.5296 -2.1802 0.2977 9 6 3.3736 -1.3017 -0.3902 10 6 3.8859 -0.3156 -1.2644 11 6 5.1967 -0.3579 -1.6379 12 6 6.0293 -1.3649 -1.1625 13 17 7.6958 -1.4043 -1.6469 14 6 5.5377 -2.3414 -0.3016 15 17 6.5929 -3.5903 0.2818 16 6 4.2305 -2.3178 0.0902 17 7 3.7115 -3.3542 1.0109 18 8 3.2053 -4.4701 0.5283 19 8 3.7560 -3.1603 2.3128 20 1 -0.4850 0.8401 -0.0004 21 1 3.2416 0.4679 -1.6349 22 1 5.5902 0.3945 -2.3052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306555535.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:40 Heat of formation + Delta-G solvation = 17.798429 kcal Electronic energy + Delta-G solvation = -15038.512821 eV Core-core repulsion = 12035.292406 eV Total energy + Delta-G solvation = -3003.220415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16282 -37.37586 -36.27826 -35.86098 -34.33002 -33.44727 -31.24779 -30.85705 -26.56103 -24.89307 -22.37754 -21.17234 -18.52872 -17.81923 -17.31906 -16.27498 -15.68619 -15.27358 -14.60441 -13.91484 -13.55242 -13.39789 -13.13295 -12.31333 -11.80851 -11.62734 -11.44250 -11.18473 -10.80648 -10.72904 -10.58598 -10.47575 -10.38871 -10.09859 -9.85093 -9.82041 -8.70268 -8.32898 -7.89443 -5.42721 0.70947 1.53514 1.71802 1.95851 2.43897 2.55205 2.71146 2.76609 2.91611 3.31614 3.53784 4.36817 5.31511 5.55787 5.60733 5.89253 6.00696 6.19617 6.53785 6.68276 6.84847 6.94620 7.24674 7.58143 7.58786 7.70875 9.02737 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.010227 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.576284 B = 2737.141890 C = 3812.288285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.231 1.231 7 C -0.378 4.378 8 H 0.105 0.895 9 C 0.108 3.892 10 C -0.213 4.213 11 C -0.025 4.025 12 C -0.175 4.175 13 Cl -0.083 7.083 14 C 0.085 3.915 15 Cl -0.064 7.064 16 C -0.124 4.124 17 N 0.008 4.992 18 O -0.171 6.171 19 O -0.159 6.159 20 H 0.309 0.691 21 H 0.128 0.872 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 4.057 -2.653 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.159 4.159 3 Si 0.747 3.253 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.401 4.401 8 H 0.123 0.877 9 C 0.103 3.897 10 C -0.232 4.232 11 C -0.044 4.044 12 C -0.204 4.204 13 Cl -0.055 7.055 14 C 0.056 3.944 15 Cl -0.035 7.035 16 C -0.207 4.207 17 N 0.503 4.497 18 O -0.374 6.374 19 O -0.366 6.366 20 H 0.122 0.878 21 H 0.145 0.855 22 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.526 4.519 -3.105 7.784 hybrid contribution 0.113 0.101 0.228 0.274 sum 5.638 4.620 -2.877 7.836 Atomic orbital electron populations 1.68944 1.09459 1.33323 1.21817 1.27972 0.94943 1.02908 0.90069 0.86081 0.81988 0.77011 0.80226 1.17924 1.19929 1.15292 1.21133 0.92285 0.96113 1.30578 0.87738 1.16885 0.92129 0.89248 0.91474 1.20708 0.95599 1.02831 1.04101 1.20317 0.92407 0.95081 0.96619 1.19532 0.86495 1.02840 1.11504 1.98272 1.17372 1.98554 1.91259 1.19589 0.88066 0.90780 0.95935 1.98367 1.66255 1.51615 1.87263 1.18992 0.92515 0.99877 1.09362 1.50019 0.95488 1.01426 1.02732 1.96192 1.46526 1.13406 1.81322 1.96183 1.61307 1.86037 0.93051 0.87773 0.85508 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -15.50 13.89 55.99 0.78 -14.73 14 2 C 0.08 1.62 5.59 -15.18 -0.08 1.53 14 3 Si 0.92 16.45 24.57 -169.99 -4.18 12.27 14 4 H -0.25 -4.14 6.69 56.52 0.38 -3.76 14 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 14 6 H -0.23 -4.30 6.85 56.52 0.39 -3.92 14 7 C -0.38 -9.10 9.49 -35.50 -0.34 -9.43 14 8 H 0.10 2.77 7.74 -52.49 -0.41 2.36 14 9 C 0.11 2.49 5.27 -106.80 -0.56 1.92 14 10 C -0.21 -4.29 7.26 -39.06 -0.28 -4.57 14 11 C -0.03 -0.46 9.76 -39.96 -0.39 -0.85 14 12 C -0.18 -3.44 6.36 -38.95 -0.25 -3.68 14 13 Cl -0.08 -1.41 27.93 -51.86 -1.45 -2.86 14 14 C 0.09 1.84 6.28 -39.88 -0.25 1.59 14 15 Cl -0.06 -1.27 27.37 -51.86 -1.42 -2.69 14 16 C -0.12 -2.92 6.26 -79.40 -0.50 -3.42 14 17 N 0.01 0.19 3.44 34.23 0.12 0.30 14 18 O -0.17 -4.25 19.97 -31.56 -0.63 -4.88 14 19 O -0.16 -3.92 19.97 -31.57 -0.63 -4.55 14 20 H 0.31 5.69 8.27 -40.82 -0.34 5.36 14 21 H 0.13 2.34 4.27 -52.49 -0.22 2.12 14 22 H 0.13 1.92 8.06 -52.49 -0.42 1.49 14 LS Contribution 242.38 15.07 3.65 3.65 Total: -1.00 -24.31 242.38 -6.64 -30.95 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -0.22 Total: -0.55 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.65 Total: -16.91 kcal Atomic # 7 Polarization: -15.32 SS G_CDS: 0.90 Total: -14.42 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.26 Total: -9.43 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -4.18 Total: 12.27 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -2.87 Total: -5.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -24.31 -6.64 -30.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306555535.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.744 kcal (2) G-P(sol) polarization free energy of solvation -24.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds