Wall clock time and date at job start Mon Mar 30 2020 07:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29501 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48505 * 109.46761 * 274.23873 * 3 2 1 5 5 H 1.48503 * 109.47522 * 34.23622 * 3 2 1 6 6 H 1.48500 * 109.47340 * 154.24264 * 3 2 1 7 7 C 1.46561 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99865 * 341.50089 * 7 2 1 9 9 C 1.40178 * 119.99702 * 161.22421 * 7 2 1 10 10 C 1.41390 * 120.26861 * 334.49877 * 9 7 2 11 11 C 1.36370 * 119.73524 * 180.02562 * 10 9 7 12 12 C 1.39037 * 120.29065 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 119.72394 * 180.02562 * 12 11 10 14 14 C 1.39145 * 120.54758 * 0.02562 * 12 11 10 15 15 Cl 1.73598 * 119.86865 * 180.02562 * 14 12 11 16 16 C 1.36488 * 120.25514 * 359.75139 * 14 12 11 17 17 N 1.48020 * 120.14838 * 180.27930 * 16 14 12 18 18 O 1.31694 * 120.00352 * 270.21758 * 17 16 14 19 19 O 1.31702 * 119.99943 * 90.21897 * 17 16 14 20 20 H 0.96999 * 119.99839 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.13060 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.85498 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.3869 2.0980 -1.3963 5 1 1.4742 2.6252 0.7877 6 1 3.5686 1.4159 0.6084 7 6 2.0278 -1.2693 0.0006 8 1 1.5296 -2.1802 0.2977 9 6 3.3736 -1.3017 -0.3902 10 6 3.8859 -0.3156 -1.2644 11 6 5.1967 -0.3579 -1.6379 12 6 6.0293 -1.3649 -1.1625 13 17 7.6958 -1.4043 -1.6469 14 6 5.5377 -2.3414 -0.3016 15 17 6.5929 -3.5903 0.2818 16 6 4.2305 -2.3178 0.0902 17 7 3.7115 -3.3542 1.0109 18 8 3.2053 -4.4701 0.5283 19 8 3.7560 -3.1603 2.3128 20 1 -0.4850 0.8401 -0.0004 21 1 3.2416 0.4679 -1.6349 22 1 5.5902 0.3945 -2.3052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306555535.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:39 Heat of formation + Delta-G solvation = 5.250110 kcal Electronic energy + Delta-G solvation = -15039.056957 eV Core-core repulsion = 12035.292406 eV Total energy + Delta-G solvation = -3003.764551 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.88636 -39.19618 -37.89629 -37.36950 -35.93752 -35.40702 -32.90381 -32.52520 -28.31737 -26.64334 -24.01856 -22.87516 -20.20457 -19.56188 -19.26634 -17.94919 -17.31468 -16.84486 -16.20545 -15.71134 -15.14562 -14.90487 -14.69201 -13.87841 -13.32512 -13.16595 -12.95012 -12.84003 -12.55905 -12.47263 -12.27508 -11.98690 -11.94915 -11.81361 -11.77036 -11.29251 -10.30642 -9.95685 -9.47367 -7.15950 -1.23955 -0.12227 0.10812 0.19556 0.76509 1.13727 1.29065 1.33974 1.42359 1.85354 2.04847 2.70362 3.78794 3.91080 4.01679 4.26172 4.40182 4.57565 4.86850 5.01149 5.19746 5.32904 5.54541 5.62169 5.89531 5.96935 7.53030 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.010227 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.576284 B = 2737.141890 C = 3812.288285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.048 3.952 3 Si 0.971 3.029 4 H -0.217 1.217 5 H -0.258 1.258 6 H -0.243 1.243 7 C -0.421 4.421 8 H 0.058 0.942 9 C 0.102 3.898 10 C -0.210 4.210 11 C -0.015 4.015 12 C -0.162 4.162 13 Cl -0.053 7.053 14 C 0.067 3.933 15 Cl -0.055 7.055 16 C -0.161 4.161 17 N 0.012 4.988 18 O -0.192 6.192 19 O -0.167 6.167 20 H 0.325 0.675 21 H 0.149 0.851 22 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 6.548 -4.140 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.183 4.183 3 Si 0.788 3.212 4 H -0.140 1.140 5 H -0.183 1.183 6 H -0.166 1.166 7 C -0.444 4.444 8 H 0.076 0.924 9 C 0.097 3.903 10 C -0.229 4.229 11 C -0.034 4.034 12 C -0.191 4.191 13 Cl -0.024 7.024 14 C 0.038 3.962 15 Cl -0.026 7.026 16 C -0.244 4.244 17 N 0.506 4.494 18 O -0.392 6.392 19 O -0.375 6.375 20 H 0.139 0.861 21 H 0.167 0.833 22 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.296 6.977 -4.617 11.101 hybrid contribution -0.311 -0.735 0.659 1.035 sum 6.986 6.242 -3.957 10.169 Atomic orbital electron populations 1.68912 1.10588 1.35195 1.22305 1.28734 0.95585 1.04733 0.89254 0.85453 0.80074 0.73322 0.82369 1.14006 1.18290 1.16626 1.21024 0.93435 0.96020 1.33898 0.92388 1.17175 0.91670 0.89893 0.91518 1.20995 0.96730 1.02244 1.02949 1.20813 0.91386 0.95143 0.96053 1.19909 0.88129 1.01659 1.09394 1.98292 1.14944 1.98438 1.90776 1.19813 0.87676 0.91861 0.96863 1.98362 1.65598 1.51402 1.87264 1.19377 0.93728 1.00488 1.10808 1.50261 0.94804 1.01543 1.02822 1.96168 1.47472 1.14350 1.81242 1.96150 1.61494 1.86048 0.93852 0.86105 0.83348 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.80 13.89 23.22 0.32 -32.48 14 2 C 0.05 2.05 5.59 87.21 0.49 2.54 14 3 Si 0.97 31.28 24.57 68.60 1.69 32.97 14 4 H -0.22 -5.74 6.69 99.48 0.67 -5.08 14 5 H -0.26 -7.66 7.11 99.48 0.71 -6.95 14 6 H -0.24 -8.32 6.85 99.48 0.68 -7.63 14 7 C -0.42 -20.97 9.49 24.91 0.24 -20.74 14 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 14 9 C 0.10 4.72 5.27 -21.27 -0.11 4.61 14 10 C -0.21 -7.86 7.26 22.61 0.16 -7.69 14 11 C -0.02 -0.50 9.76 22.03 0.21 -0.29 14 12 C -0.16 -5.86 6.36 22.68 0.14 -5.71 14 13 Cl -0.05 -1.60 27.93 -2.72 -0.08 -1.68 14 14 C 0.07 2.81 6.28 22.08 0.14 2.95 14 15 Cl -0.06 -2.15 27.37 -2.72 -0.07 -2.23 14 16 C -0.16 -7.65 6.26 36.73 0.23 -7.42 14 17 N 0.01 0.59 3.44 -45.62 -0.16 0.43 14 18 O -0.19 -9.95 19.97 3.52 0.07 -9.88 14 19 O -0.17 -8.56 19.97 3.51 0.07 -8.49 14 20 H 0.33 11.82 8.27 -92.71 -0.77 11.05 14 21 H 0.15 4.86 4.27 -2.91 -0.01 4.85 14 22 H 0.17 4.08 8.06 -2.91 -0.02 4.06 14 Total: -1.00 -54.09 242.38 4.57 -49.51 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.23 Total: 3.61 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 1.50 Total: -31.76 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.17 Total: -32.05 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.14 Total: -18.37 kcal Atomic # 14 Polarization: 31.28 SS G_CDS: 1.69 Total: 32.97 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -0.15 Total: -3.91 kcal Total: -54.09 4.57 -49.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306555535.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.763 kcal (2) G-P(sol) polarization free energy of solvation -54.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds