Wall clock time and date at job start Mon Mar 30 2020 07:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29495 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48504 * 109.47002 * 270.00009 * 3 2 1 5 5 H 1.48491 * 109.47322 * 29.99879 * 3 2 1 6 6 H 1.48507 * 109.47184 * 150.00282 * 3 2 1 7 7 C 1.46570 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99597 * 196.93227 * 7 2 1 9 9 C 1.40172 * 119.99977 * 16.93251 * 7 2 1 10 10 C 1.41495 * 120.30430 * 47.26523 * 9 7 2 11 11 Cl 1.73592 * 120.24455 * 0.02562 * 10 9 7 12 12 C 1.37848 * 119.50279 * 180.02562 * 10 9 7 13 13 Cl 1.73607 * 119.93629 * 179.97438 * 12 10 9 14 14 C 1.38764 * 120.13267 * 359.97438 * 12 10 9 15 15 C 1.38861 * 120.62155 * 359.97438 * 14 12 10 16 16 C 1.36376 * 120.49803 * 0.28316 * 15 14 12 17 17 N 1.48017 * 120.07568 * 179.69440 * 16 15 14 18 18 O 1.31694 * 119.99986 * 5.74144 * 17 16 15 19 19 O 1.31699 * 120.00034 * 185.73985 * 17 16 15 20 20 H 0.97004 * 119.99909 * 354.94726 * 1 2 3 21 21 H 1.07999 * 119.69259 * 179.97438 * 14 12 10 22 22 H 1.08001 * 119.75429 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 2.4763 2.0465 -1.4001 5 1 1.4263 2.6527 0.7000 6 1 3.5265 1.4403 0.7000 7 6 2.0278 -1.2693 0.0006 8 1 3.0728 -1.2894 0.2730 9 6 1.3725 -2.4571 -0.3525 10 6 0.5627 -2.5084 -1.5116 11 17 0.3732 -1.1002 -2.5088 12 6 -0.0746 -3.6849 -1.8430 13 17 -1.0714 -3.7603 -3.2623 14 6 0.0791 -4.8093 -1.0444 15 6 0.8734 -4.7652 0.0938 16 6 1.5113 -3.6132 0.4484 17 7 2.3503 -3.5749 1.6673 18 8 2.5734 -4.6799 2.3481 19 8 2.8737 -2.4357 2.0708 20 1 -0.4850 0.8368 0.0740 21 1 -0.4238 -5.7273 -1.3104 22 1 0.9829 -5.6485 0.7055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306565589.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:18 Heat of formation + Delta-G solvation = 3.425189 kcal Electronic energy + Delta-G solvation = -15144.068508 eV Core-core repulsion = 12140.224823 eV Total energy + Delta-G solvation = -3003.843685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52890 -38.59482 -37.48265 -37.08956 -36.09883 -34.61914 -32.55173 -31.82572 -28.22272 -26.42334 -23.64187 -22.65636 -20.23686 -18.75847 -18.46274 -17.68742 -16.78081 -16.42498 -16.22088 -15.85019 -14.84613 -14.76861 -13.95279 -13.87519 -13.38322 -13.25636 -12.89592 -12.60565 -12.29038 -12.14826 -11.87151 -11.79927 -11.61728 -11.32326 -11.24117 -11.05819 -9.91804 -9.71159 -9.32508 -7.03305 -1.23073 0.36875 0.50467 0.93012 1.00102 1.29361 1.36404 1.47884 1.54873 2.05128 2.15974 2.67015 3.92155 4.15080 4.16595 4.36410 4.49177 4.80581 4.94956 5.12615 5.34000 5.47354 5.78144 5.84541 6.00829 6.62847 7.55619 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.013184 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.691715 B = 2123.343484 C = 3714.572117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.239 1.239 5 H -0.245 1.245 6 H -0.255 1.255 7 C -0.280 4.280 8 H 0.113 0.887 9 C 0.052 3.948 10 C -0.048 4.048 11 Cl -0.042 7.042 12 C 0.011 3.989 13 Cl -0.045 7.045 14 C -0.178 4.178 15 C -0.029 4.029 16 C -0.088 4.088 17 N 0.032 4.968 18 O -0.397 6.397 19 O -0.321 6.321 20 H 0.326 0.674 21 H 0.172 0.828 22 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 2.806 -8.661 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.162 1.162 5 H -0.169 1.169 6 H -0.178 1.178 7 C -0.308 4.308 8 H 0.131 0.869 9 C 0.046 3.954 10 C -0.078 4.078 11 Cl -0.013 7.013 12 C -0.018 4.018 13 Cl -0.016 7.016 14 C -0.200 4.200 15 C -0.048 4.048 16 C -0.194 4.194 17 N 0.434 4.566 18 O -0.529 6.529 19 O -0.470 6.470 20 H 0.140 0.860 21 H 0.189 0.811 22 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.679 2.833 -8.960 10.498 hybrid contribution 0.428 0.471 0.544 0.837 sum -4.251 3.304 -8.417 9.991 Atomic orbital electron populations 1.68976 1.10045 1.35284 1.17369 1.28472 0.95705 1.04401 0.91697 0.85119 0.79872 0.73707 0.81394 1.16232 1.16854 1.17816 1.22276 0.98101 0.90279 1.20143 0.86900 1.16933 0.94034 0.92681 0.91743 1.20914 1.04229 0.88106 0.94539 1.98269 1.96096 1.40393 1.66519 1.20848 0.95448 0.94294 0.91189 1.98334 1.67070 1.98561 1.37646 1.20688 1.05265 0.98603 0.95433 1.20444 0.92447 0.95924 0.96005 1.20140 1.09459 0.99981 0.89791 1.49728 1.02562 1.00788 1.03492 1.96029 1.75409 1.19873 1.61587 1.96038 1.57074 1.14442 1.79459 0.85953 0.81102 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -27.71 11.31 23.22 0.26 -27.45 14 2 C 0.03 1.20 4.09 87.21 0.36 1.56 14 3 Si 0.98 30.27 29.67 68.60 2.04 32.31 14 4 H -0.24 -6.79 7.11 99.48 0.71 -6.09 14 5 H -0.25 -6.83 7.11 99.48 0.71 -6.13 14 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 14 7 C -0.28 -12.93 6.95 24.91 0.17 -12.75 14 8 H 0.11 5.47 6.71 -2.91 -0.02 5.45 14 9 C 0.05 2.44 5.29 -21.25 -0.11 2.33 14 10 C -0.05 -2.00 5.99 22.98 0.14 -1.86 14 11 Cl -0.04 -1.55 24.15 -2.72 -0.07 -1.62 14 12 C 0.01 0.39 6.32 22.30 0.14 0.53 14 13 Cl -0.05 -1.36 27.96 -2.72 -0.08 -1.44 14 14 C -0.18 -6.15 9.84 22.54 0.22 -5.93 14 15 C -0.03 -1.18 9.51 21.98 0.21 -0.97 14 16 C -0.09 -4.34 6.90 36.70 0.25 -4.09 14 17 N 0.03 1.80 4.98 -45.69 -0.23 1.57 14 18 O -0.40 -22.91 19.14 3.52 0.07 -22.84 14 19 O -0.32 -18.63 16.54 3.52 0.06 -18.58 14 20 H 0.33 11.04 8.27 -92.71 -0.77 10.27 14 21 H 0.17 4.54 8.06 -2.91 -0.02 4.52 14 22 H 0.14 5.58 7.54 -2.91 -0.02 5.56 14 Total: -1.00 -57.99 240.54 4.72 -53.27 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.29 Total: 5.96 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 1.38 Total: -21.19 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.03 Total: -25.88 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: 0.13 Total: -41.42 kcal Atomic # 14 Polarization: 30.27 SS G_CDS: 2.04 Total: 32.31 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.14 Total: -3.05 kcal Total: -57.99 4.72 -53.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565589.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.691 kcal (2) G-P(sol) polarization free energy of solvation -57.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds