Wall clock time and date at job start Mon Mar 30 2020 07:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29481 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48499 * 109.47204 * 239.99991 * 3 2 1 5 5 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47179 * 119.99705 * 3 2 1 7 7 C 1.46594 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 195.22156 * 7 2 1 9 9 C 1.40019 * 119.99670 * 15.22413 * 7 2 1 10 10 C 1.41588 * 120.29437 * 47.81260 * 9 7 2 11 11 Cl 1.73600 * 120.16838 * 359.95510 * 10 9 7 12 12 C 1.36602 * 119.65890 * 179.97438 * 10 9 7 13 13 C 1.38878 * 120.26797 * 359.97438 * 12 10 9 14 14 Cl 1.73608 * 119.70107 * 179.97438 * 13 12 10 15 15 C 1.39139 * 120.60212 * 0.02562 * 13 12 10 16 16 C 1.36296 * 120.33303 * 0.02562 * 15 13 12 17 17 N 1.48015 * 120.13658 * 180.27803 * 16 15 13 18 18 O 1.31699 * 120.00444 * 5.86849 * 17 16 15 19 19 O 1.31707 * 119.99933 * 185.87728 * 17 16 15 20 20 H 0.97008 * 119.99927 * 354.73206 * 1 2 3 21 21 H 1.08003 * 119.86782 * 179.97438 * 12 10 9 22 22 H 1.08000 * 119.83262 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.0826 1.6964 -1.2125 5 1 1.2639 2.7465 -0.0006 6 1 3.0826 1.6964 1.2125 7 6 2.0278 -1.2695 0.0006 8 1 3.0794 -1.2858 0.2461 9 6 1.3645 -2.4610 -0.3173 10 6 0.5336 -2.5325 -1.4616 11 17 0.3297 -1.1414 -2.4799 12 6 -0.1069 -3.7015 -1.7598 13 6 0.0550 -4.8156 -0.9466 14 17 -0.7666 -6.2938 -1.3391 15 6 0.8688 -4.7576 0.1805 16 6 1.5186 -3.6034 0.5016 17 7 2.3881 -3.5484 1.6982 18 8 2.6276 -4.6436 2.3892 19 8 2.9223 -2.4040 2.0720 20 1 -0.4850 0.8366 0.0771 21 1 -0.7418 -3.7597 -2.6316 22 1 0.9861 -5.6316 0.8040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306578574.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:28 Heat of formation + Delta-G solvation = 16.423208 kcal Electronic energy + Delta-G solvation = -15065.488824 eV Core-core repulsion = 12062.208775 eV Total energy + Delta-G solvation = -3003.280049 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.86868 -36.85864 -36.03698 -35.28487 -34.36590 -32.83726 -30.81775 -30.33664 -26.40109 -24.67957 -21.88408 -21.02445 -18.49279 -17.14003 -16.69218 -15.92576 -15.08582 -14.71556 -14.47599 -14.29030 -13.51268 -12.99873 -12.58512 -12.21371 -11.82585 -11.55436 -11.35230 -11.22693 -10.70934 -10.57367 -10.42908 -10.21162 -9.78917 -9.52850 -9.40174 -9.30837 -8.45753 -7.94914 -7.64128 -5.24889 0.68317 1.92195 2.34072 2.40091 2.72054 2.75117 2.77159 3.01597 3.19971 3.44146 3.77205 4.39653 5.47687 5.71930 5.84738 6.06247 6.15575 6.27996 6.68068 6.79418 6.89476 7.21254 7.55410 7.66019 7.78561 8.42000 9.18449 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.009942 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.657556 B = 2815.537745 C = 4015.313329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.063 3.937 3 Si 0.929 3.071 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.309 4.309 8 H 0.124 0.876 9 C 0.088 3.912 10 C -0.040 4.040 11 Cl -0.066 7.066 12 C -0.060 4.060 13 C -0.134 4.134 14 Cl -0.090 7.090 15 C -0.005 4.005 16 C -0.081 4.081 17 N 0.034 4.966 18 O -0.325 6.325 19 O -0.240 6.240 20 H 0.308 0.692 21 H 0.127 0.873 22 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 1.583 -5.800 6.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.171 4.171 3 Si 0.750 3.250 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.335 4.335 8 H 0.141 0.859 9 C 0.082 3.918 10 C -0.068 4.068 11 Cl -0.037 7.037 12 C -0.080 4.080 13 C -0.164 4.164 14 Cl -0.062 7.062 15 C -0.025 4.025 16 C -0.180 4.180 17 N 0.466 4.534 18 O -0.476 6.476 19 O -0.411 6.411 20 H 0.121 0.879 21 H 0.145 0.855 22 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.892 1.527 -6.185 6.997 hybrid contribution 0.199 0.554 0.282 0.653 sum -2.693 2.080 -5.903 6.814 Atomic orbital electron populations 1.69026 1.09203 1.33243 1.19825 1.27720 0.94926 1.02553 0.91873 0.85921 0.80527 0.76849 0.81750 1.17340 1.19213 1.17053 1.21777 0.98082 0.88771 1.24853 0.85886 1.16817 0.92302 0.92166 0.90544 1.20460 1.04431 0.87639 0.94270 1.98268 1.96210 1.43040 1.66185 1.20300 0.97840 0.90716 0.99153 1.19687 1.07609 0.88189 1.00868 1.98279 1.78598 1.35287 1.94043 1.20063 0.91631 0.96646 0.94196 1.19368 1.08898 0.98471 0.91295 1.49646 1.00397 1.01390 1.01920 1.96118 1.72758 1.20724 1.57996 1.96125 1.54097 1.13073 1.77834 0.87877 0.85469 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -14.36 11.21 55.99 0.63 -13.73 14 2 C 0.06 1.30 4.16 -15.17 -0.06 1.23 14 3 Si 0.93 15.62 29.67 -169.99 -5.04 10.58 14 4 H -0.25 -4.11 7.11 56.52 0.40 -3.71 14 5 H -0.27 -4.24 7.11 56.52 0.40 -3.84 14 6 H -0.25 -4.26 7.11 56.52 0.40 -3.86 14 7 C -0.31 -7.03 6.94 -35.55 -0.25 -7.28 14 8 H 0.12 2.84 6.72 -52.49 -0.35 2.49 14 9 C 0.09 2.04 5.29 -106.75 -0.56 1.47 14 10 C -0.04 -0.83 5.94 -38.90 -0.23 -1.06 14 11 Cl -0.07 -1.25 25.11 -51.86 -1.30 -2.55 14 12 C -0.06 -1.15 9.53 -39.94 -0.38 -1.53 14 13 C -0.13 -2.60 6.36 -39.01 -0.25 -2.85 14 14 Cl -0.09 -1.50 28.94 -51.86 -1.50 -3.00 14 15 C -0.01 -0.11 9.30 -39.95 -0.37 -0.48 14 16 C -0.08 -1.95 6.90 -79.44 -0.55 -2.50 14 17 N 0.03 0.90 4.98 34.21 0.17 1.07 14 18 O -0.33 -8.70 19.15 -31.57 -0.60 -9.31 14 19 O -0.24 -6.41 16.56 -31.57 -0.52 -6.93 14 20 H 0.31 5.62 8.28 -40.82 -0.34 5.28 14 21 H 0.13 2.13 8.06 -52.48 -0.42 1.70 14 22 H 0.14 2.79 7.56 -52.49 -0.40 2.40 14 LS Contribution 241.95 15.07 3.65 3.65 Total: -1.00 -25.28 241.95 -7.49 -32.77 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -0.30 Total: 0.46 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.65 Total: -13.00 kcal Atomic # 7 Polarization: -13.46 SS G_CDS: 0.80 Total: -12.66 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.13 Total: -16.24 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: -5.04 Total: 10.58 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -2.80 Total: -5.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -25.28 -7.49 -32.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306578574.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.195 kcal (2) G-P(sol) polarization free energy of solvation -25.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds