Wall clock time and date at job start Mon Mar 30 2020 07:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29481 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48499 * 109.47204 * 239.99991 * 3 2 1 5 5 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47179 * 119.99705 * 3 2 1 7 7 C 1.46594 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 195.22156 * 7 2 1 9 9 C 1.40019 * 119.99670 * 15.22413 * 7 2 1 10 10 C 1.41588 * 120.29437 * 47.81260 * 9 7 2 11 11 Cl 1.73600 * 120.16838 * 359.95510 * 10 9 7 12 12 C 1.36602 * 119.65890 * 179.97438 * 10 9 7 13 13 C 1.38878 * 120.26797 * 359.97438 * 12 10 9 14 14 Cl 1.73608 * 119.70107 * 179.97438 * 13 12 10 15 15 C 1.39139 * 120.60212 * 0.02562 * 13 12 10 16 16 C 1.36296 * 120.33303 * 0.02562 * 15 13 12 17 17 N 1.48015 * 120.13658 * 180.27803 * 16 15 13 18 18 O 1.31699 * 120.00444 * 5.86849 * 17 16 15 19 19 O 1.31707 * 119.99933 * 185.87728 * 17 16 15 20 20 H 0.97008 * 119.99927 * 354.73206 * 1 2 3 21 21 H 1.08003 * 119.86782 * 179.97438 * 12 10 9 22 22 H 1.08000 * 119.83262 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.0826 1.6964 -1.2125 5 1 1.2639 2.7465 -0.0006 6 1 3.0826 1.6964 1.2125 7 6 2.0278 -1.2695 0.0006 8 1 3.0794 -1.2858 0.2461 9 6 1.3645 -2.4610 -0.3173 10 6 0.5336 -2.5325 -1.4616 11 17 0.3297 -1.1414 -2.4799 12 6 -0.1069 -3.7015 -1.7598 13 6 0.0550 -4.8156 -0.9466 14 17 -0.7666 -6.2938 -1.3391 15 6 0.8688 -4.7576 0.1805 16 6 1.5186 -3.6034 0.5016 17 7 2.3881 -3.5484 1.6982 18 8 2.6276 -4.6436 2.3892 19 8 2.9223 -2.4040 2.0720 20 1 -0.4850 0.8366 0.0771 21 1 -0.7418 -3.7597 -2.6316 22 1 0.9861 -5.6316 0.8040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306578574.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:28 Heat of formation + Delta-G solvation = 3.804044 kcal Electronic energy + Delta-G solvation = -15066.036032 eV Core-core repulsion = 12062.208775 eV Total energy + Delta-G solvation = -3003.827257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.57793 -38.57028 -37.60121 -36.89563 -36.07967 -34.63561 -32.52780 -32.04513 -28.18473 -26.45299 -23.57805 -22.73992 -20.22473 -18.86497 -18.47944 -17.56313 -16.64858 -16.42872 -16.24157 -15.95308 -15.05799 -14.63802 -14.12739 -13.87183 -13.37134 -13.10170 -13.00566 -12.78509 -12.10041 -12.06123 -11.96213 -11.75963 -11.60614 -11.33502 -11.26013 -11.04228 -10.10861 -9.64133 -9.31132 -7.04304 -1.21764 0.26486 0.59315 0.75074 1.28869 1.35514 1.38896 1.46442 1.55133 2.05807 2.15476 2.66402 3.89356 4.08988 4.13502 4.36120 4.47208 4.59478 5.00817 5.08154 5.26022 5.44546 5.75153 5.83330 5.99623 6.60384 7.54802 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.009942 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.657556 B = 2815.537745 C = 4015.313329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.239 1.239 5 H -0.241 1.241 6 H -0.259 1.259 7 C -0.271 4.271 8 H 0.113 0.887 9 C 0.042 3.958 10 C -0.032 4.032 11 Cl -0.044 7.044 12 C -0.063 4.063 13 C -0.099 4.099 14 Cl -0.055 7.055 15 C -0.032 4.032 16 C -0.080 4.080 17 N 0.033 4.967 18 O -0.402 6.402 19 O -0.316 6.316 20 H 0.327 0.673 21 H 0.162 0.838 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 3.360 -8.653 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.162 1.162 5 H -0.164 1.164 6 H -0.183 1.183 7 C -0.299 4.299 8 H 0.131 0.869 9 C 0.036 3.964 10 C -0.061 4.061 11 Cl -0.015 7.015 12 C -0.083 4.083 13 C -0.130 4.130 14 Cl -0.026 7.026 15 C -0.053 4.053 16 C -0.185 4.185 17 N 0.435 4.565 18 O -0.532 6.532 19 O -0.466 6.466 20 H 0.142 0.858 21 H 0.180 0.820 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.742 3.253 -8.859 10.562 hybrid contribution 0.465 0.198 0.718 0.878 sum -4.277 3.451 -8.141 9.822 Atomic orbital electron populations 1.68964 1.09973 1.35452 1.16881 1.28477 0.95756 1.04289 0.91877 0.85153 0.79815 0.73507 0.81556 1.16198 1.16394 1.18314 1.22301 0.97837 0.90271 1.19479 0.86924 1.17134 0.94649 0.92382 0.92207 1.20561 1.02864 0.89073 0.93562 1.98273 1.96020 1.42005 1.65197 1.20621 0.97814 0.89738 1.00094 1.19947 1.04748 0.89490 0.98805 1.98303 1.77540 1.33181 1.93615 1.20159 0.93100 0.96351 0.95643 1.19761 1.08210 0.99584 0.90982 1.49650 1.02662 1.00839 1.03398 1.96041 1.75748 1.21129 1.60313 1.96032 1.56920 1.13534 1.80089 0.85815 0.82028 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -26.48 11.21 23.22 0.26 -26.22 14 2 C 0.03 1.13 4.16 87.22 0.36 1.49 14 3 Si 0.98 29.28 29.67 68.60 2.04 31.32 14 4 H -0.24 -6.76 7.11 99.48 0.71 -6.05 14 5 H -0.24 -6.23 7.11 99.48 0.71 -5.53 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 7 C -0.27 -12.21 6.94 24.88 0.17 -12.04 14 8 H 0.11 5.32 6.72 -2.91 -0.02 5.30 14 9 C 0.04 1.94 5.29 -21.24 -0.11 1.83 14 10 C -0.03 -1.26 5.94 22.71 0.13 -1.13 14 11 Cl -0.04 -1.51 25.11 -2.72 -0.07 -1.58 14 12 C -0.06 -2.20 9.53 22.04 0.21 -1.99 14 13 C -0.10 -3.64 6.36 22.64 0.14 -3.50 14 14 Cl -0.05 -1.66 28.94 -2.72 -0.08 -1.74 14 15 C -0.03 -1.41 9.30 22.03 0.20 -1.20 14 16 C -0.08 -3.95 6.90 36.70 0.25 -3.70 14 17 N 0.03 1.86 4.98 -45.68 -0.23 1.64 14 18 O -0.40 -23.62 19.15 3.52 0.07 -23.55 14 19 O -0.32 -18.28 16.56 3.50 0.06 -18.22 14 20 H 0.33 10.61 8.28 -92.70 -0.77 9.85 14 21 H 0.16 4.58 8.06 -2.91 -0.02 4.55 14 22 H 0.13 5.78 7.56 -2.91 -0.02 5.75 14 Total: -1.00 -56.99 241.95 4.70 -52.29 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.29 Total: 6.30 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 1.37 Total: -20.23 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.03 Total: -24.58 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: 0.13 Total: -41.78 kcal Atomic # 14 Polarization: 29.28 SS G_CDS: 2.04 Total: 31.32 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.15 Total: -3.31 kcal Total: -56.99 4.70 -52.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306578574.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -56.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds