Wall clock time and date at job start Mon Mar 30 2020 07:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86802 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47221 * 300.00449 * 3 2 1 6 6 H 1.48506 * 109.46819 * 60.00356 * 3 2 1 7 7 C 1.39935 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00077 * 162.00290 * 7 2 1 9 9 C 1.41335 * 119.99855 * 342.00552 * 7 2 1 10 10 C 1.40742 * 120.65563 * 335.76984 * 9 7 2 11 11 N 1.31461 * 120.42222 * 180.02562 * 10 9 7 12 12 C 1.32238 * 121.99407 * 0.02562 * 11 10 9 13 13 Cl 1.73597 * 119.34706 * 179.97438 * 12 11 10 14 14 C 1.38701 * 121.30413 * 359.97438 * 12 11 10 15 15 C 1.38106 * 119.40131 * 0.27480 * 14 12 11 16 16 Br 1.89105 * 120.90704 * 179.74844 * 15 14 12 17 17 H 0.97008 * 119.99968 * 359.97438 * 1 2 3 18 18 H 1.07991 * 119.78737 * 0.02562 * 10 9 7 19 19 H 1.07998 * 120.29778 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0484 -1.2346 -0.2895 9 6 1.3533 -2.4061 0.3771 10 6 0.2210 -2.3704 1.2122 11 7 -0.3843 -3.4841 1.5609 12 6 0.0366 -4.6685 1.1502 13 17 -0.8145 -6.0953 1.6535 14 6 1.1446 -4.7933 0.3253 15 6 1.8260 -3.6593 -0.0711 16 35 3.3461 -3.7806 -1.1894 17 1 -0.4850 0.8401 0.0004 18 1 -0.1530 -1.4221 1.5687 19 1 1.4745 -5.7688 -0.0001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306716440.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:08 Heat of formation + Delta-G solvation = -6.638787 kcal Electronic energy + Delta-G solvation = -10093.189640 eV Core-core repulsion = 7874.481862 eV Total energy + Delta-G solvation = -2218.707778 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.35433 -37.25837 -35.97038 -33.83245 -31.72839 -30.59593 -27.51424 -23.94262 -23.16473 -19.57384 -17.76699 -17.39385 -16.63448 -15.75821 -14.99923 -14.72419 -13.79511 -13.62971 -13.20717 -12.97313 -12.80376 -12.49167 -11.99252 -11.92919 -11.86084 -11.23011 -10.82676 -10.15897 -9.98262 -9.59143 -8.93325 -6.61640 0.52525 0.55038 0.93297 1.40907 1.46838 1.50445 1.59182 2.15626 2.52534 3.38931 4.05030 4.43049 4.58624 4.95823 5.03965 5.07412 5.30572 5.76840 6.17778 6.41809 6.55098 7.38683 8.04967 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.010791 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.885989 B = 2594.186010 C = 3853.075854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.058 3.942 10 C 0.053 3.947 11 N -0.476 5.476 12 C 0.013 3.987 13 Cl -0.066 7.066 14 C -0.075 4.075 15 C -0.186 4.186 16 Br -0.050 7.050 17 H 0.303 0.697 18 H 0.155 0.845 19 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -1.268 -1.907 5.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.121 0.879 9 C 0.051 3.949 10 C -0.115 4.115 11 N -0.186 5.186 12 C -0.145 4.145 13 Cl -0.038 7.038 14 C -0.097 4.097 15 C -0.272 4.272 16 Br 0.035 6.965 17 H 0.115 0.885 18 H 0.172 0.828 19 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.803 -1.364 -1.768 5.296 hybrid contribution 0.223 0.345 -0.219 0.465 sum 5.026 -1.018 -1.986 5.499 Atomic orbital electron populations 1.69784 1.09333 1.32403 1.30092 1.26993 0.95501 1.05155 0.90536 0.85013 0.79663 0.75073 0.79401 1.17523 1.18711 1.18366 1.20153 0.99225 0.90917 1.35845 0.87914 1.18680 0.92842 0.92767 0.90661 1.22870 0.96087 0.93976 0.98598 1.66400 1.31033 0.98375 1.22828 1.20780 0.98070 0.87595 1.08078 1.98249 1.78543 1.35702 1.91349 1.21245 0.93724 0.98409 0.96355 1.21884 1.00874 0.95450 1.08973 1.96330 1.36692 1.98452 1.65060 0.88535 0.82778 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.20 10.98 21.83 0.24 -35.96 13 2 C 0.04 1.67 5.15 85.25 0.44 2.11 13 3 Si 0.99 32.68 29.60 68.60 2.03 34.72 13 4 H -0.25 -8.19 7.11 99.48 0.71 -7.48 13 5 H -0.26 -8.38 7.11 99.48 0.71 -7.67 13 6 H -0.26 -8.24 7.11 99.48 0.71 -7.54 13 7 C -0.43 -20.28 8.54 23.44 0.20 -20.08 13 8 H 0.10 4.61 6.97 -2.91 -0.02 4.59 13 9 C 0.06 2.84 5.59 -21.17 -0.12 2.72 13 10 C 0.05 2.71 9.90 85.36 0.84 3.56 13 11 N -0.48 -23.91 10.31 -184.51 -1.90 -25.81 13 12 C 0.01 0.60 7.28 84.74 0.62 1.22 13 13 Cl -0.07 -2.55 29.09 -2.72 -0.08 -2.63 13 14 C -0.07 -3.24 9.63 22.35 0.22 -3.03 13 15 C -0.19 -8.47 6.32 22.98 0.15 -8.32 13 16 Br -0.05 -1.89 32.28 -20.37 -0.66 -2.55 13 17 H 0.30 12.23 8.30 -92.70 -0.77 11.46 13 18 H 0.16 7.89 6.16 -2.92 -0.02 7.87 13 19 H 0.14 5.30 8.06 -2.91 -0.02 5.27 13 Total: -1.00 -50.81 215.47 3.26 -47.55 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.29 Total: 6.51 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 2.34 Total: -21.83 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.66 Total: -61.77 kcal Atomic # 14 Polarization: 32.68 SS G_CDS: 2.03 Total: 34.72 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.63 kcal Atomic # 35 Polarization: -1.89 SS G_CDS: -0.66 Total: -2.55 kcal Total: -50.81 3.26 -47.55 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306716440.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.912 kcal (2) G-P(sol) polarization free energy of solvation -50.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds