Wall clock time and date at job start Mon Mar 30 2020 07:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 119.99642 * 2 1 4 4 H 1.48506 * 109.47113 * 239.99814 * 3 2 1 5 5 H 1.48494 * 109.47555 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47052 * 120.00199 * 3 2 1 7 7 C 1.39946 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99522 * 161.87158 * 7 2 1 9 9 C 1.41370 * 120.00237 * 341.86914 * 7 2 1 10 10 C 1.40745 * 120.66259 * 335.96515 * 9 7 2 11 11 N 1.31467 * 120.43409 * 180.02562 * 10 9 7 12 12 C 1.32119 * 122.02423 * 359.97438 * 11 10 9 13 13 C 1.38608 * 121.32041 * 359.97438 * 12 11 10 14 14 Cl 1.73606 * 120.30583 * 180.02562 * 13 12 11 15 15 C 1.38321 * 119.38928 * 0.02562 * 13 12 11 16 16 Br 1.89099 * 120.91728 * 180.02562 * 15 13 12 17 17 H 0.96999 * 120.00308 * 0.02562 * 1 2 3 18 18 H 1.07993 * 119.78539 * 0.02562 * 10 9 7 19 19 H 1.07998 * 119.33656 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0478 -1.2353 -0.2905 9 6 1.3539 -2.4057 0.3821 10 6 0.2208 -2.3683 1.2161 11 7 -0.3838 -3.4812 1.5686 12 6 0.0370 -4.6660 1.1625 13 6 1.1442 -4.7938 0.3386 14 17 1.6739 -6.3637 -0.1798 15 6 1.8234 -3.6590 -0.0668 16 35 3.3388 -3.7832 -1.1911 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1545 -1.4191 1.5690 19 1 -0.4930 -5.5524 1.4782 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306725235.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:45 Heat of formation + Delta-G solvation = 6.852307 kcal Electronic energy + Delta-G solvation = -10161.721801 eV Core-core repulsion = 7943.599041 eV Total energy + Delta-G solvation = -2218.122760 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.57114 -35.78159 -34.30742 -31.91914 -29.86539 -28.73880 -25.86739 -21.97282 -21.53952 -17.82530 -16.00184 -15.37967 -14.91868 -14.48733 -13.19755 -13.10492 -11.89887 -11.83987 -11.50670 -11.37734 -11.18778 -11.00628 -10.65691 -10.33143 -10.21403 -9.55134 -9.00656 -8.33022 -8.08805 -7.79850 -7.22883 -4.82815 2.23552 2.35415 2.67432 2.90024 2.92519 2.99369 3.10974 3.66751 4.28081 5.23225 5.80800 6.14456 6.34143 6.68787 6.76413 6.91260 7.18201 7.59433 8.00483 8.23065 8.33710 9.31559 9.72588 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.010980 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.514203 B = 2549.560021 C = 3437.922612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.423 4.423 8 H 0.098 0.902 9 C 0.088 3.912 10 C 0.062 3.938 11 N -0.456 5.456 12 C -0.040 4.040 13 C -0.011 4.011 14 Cl -0.093 7.093 15 C -0.176 4.176 16 Br -0.072 7.072 17 H 0.293 0.707 18 H 0.162 0.838 19 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -1.896 -1.277 4.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.452 4.452 8 H 0.116 0.884 9 C 0.081 3.919 10 C -0.107 4.107 11 N -0.164 5.164 12 C -0.191 4.191 13 C -0.042 4.042 14 Cl -0.065 7.065 15 C -0.262 4.262 16 Br 0.012 6.988 17 H 0.104 0.896 18 H 0.179 0.821 19 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.769 -1.980 -1.228 4.431 hybrid contribution 0.718 0.527 -0.458 1.001 sum 4.487 -1.453 -1.686 5.008 Atomic orbital electron populations 1.69743 1.07908 1.30939 1.30727 1.26119 0.94891 1.02206 0.91568 0.86121 0.80151 0.78725 0.80666 1.18350 1.19817 1.18183 1.19824 0.99031 0.90269 1.36048 0.88370 1.18346 0.92463 0.90862 0.90249 1.23198 0.94998 0.95529 0.97015 1.67283 1.29417 0.98301 1.21381 1.21688 0.97507 0.95580 1.04361 1.21619 0.97858 0.84177 1.00498 1.98284 1.90274 1.27859 1.90075 1.21721 1.00634 0.94576 1.09305 1.96339 1.38415 1.98534 1.65486 0.89569 0.82142 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.81 10.97 55.55 0.61 -17.20 13 2 C 0.07 1.67 5.15 -17.34 -0.09 1.58 13 3 Si 0.92 16.77 29.60 -169.99 -5.03 11.74 13 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 13 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 13 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 13 7 C -0.42 -10.17 8.54 -37.75 -0.32 -10.49 13 8 H 0.10 2.29 6.98 -52.49 -0.37 1.93 13 9 C 0.09 2.20 5.59 -106.65 -0.60 1.60 13 10 C 0.06 1.54 9.90 -16.76 -0.17 1.37 13 11 N -0.46 -11.14 10.33 -12.54 -0.13 -11.27 13 12 C -0.04 -0.91 10.97 -17.29 -0.19 -1.10 13 13 C -0.01 -0.24 6.34 -39.41 -0.25 -0.49 13 14 Cl -0.09 -1.80 27.89 -51.86 -1.45 -3.24 13 15 C -0.18 -4.19 6.33 -38.44 -0.24 -4.43 13 16 Br -0.07 -1.51 31.22 -68.01 -2.12 -3.63 13 17 H 0.29 6.08 8.30 -40.82 -0.34 5.74 13 18 H 0.16 3.99 6.15 -52.49 -0.32 3.67 13 19 H 0.13 2.70 8.06 -52.49 -0.42 2.27 13 LS Contribution 213.63 15.07 3.22 3.22 Total: -1.00 -24.73 213.63 -7.00 -31.73 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -0.25 Total: 0.61 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.86 Total: -11.96 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.48 Total: -28.47 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.45 Total: -3.24 kcal Atomic # 35 Polarization: -1.51 SS G_CDS: -2.12 Total: -3.63 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -24.73 -7.00 -31.73 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725235.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.585 kcal (2) G-P(sol) polarization free energy of solvation -24.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds