Wall clock time and date at job start Mon Mar 30 2020 07:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 119.99642 * 2 1 4 4 H 1.48506 * 109.47113 * 239.99814 * 3 2 1 5 5 H 1.48494 * 109.47555 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47052 * 120.00199 * 3 2 1 7 7 C 1.39946 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99522 * 161.87158 * 7 2 1 9 9 C 1.41370 * 120.00237 * 341.86914 * 7 2 1 10 10 C 1.40745 * 120.66259 * 335.96515 * 9 7 2 11 11 N 1.31467 * 120.43409 * 180.02562 * 10 9 7 12 12 C 1.32119 * 122.02423 * 359.97438 * 11 10 9 13 13 C 1.38608 * 121.32041 * 359.97438 * 12 11 10 14 14 Cl 1.73606 * 120.30583 * 180.02562 * 13 12 11 15 15 C 1.38321 * 119.38928 * 0.02562 * 13 12 11 16 16 Br 1.89099 * 120.91728 * 180.02562 * 15 13 12 17 17 H 0.96999 * 120.00308 * 0.02562 * 1 2 3 18 18 H 1.07993 * 119.78539 * 0.02562 * 10 9 7 19 19 H 1.07998 * 119.33656 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0478 -1.2353 -0.2905 9 6 1.3539 -2.4057 0.3821 10 6 0.2208 -2.3683 1.2161 11 7 -0.3838 -3.4812 1.5686 12 6 0.0370 -4.6660 1.1625 13 6 1.1442 -4.7938 0.3386 14 17 1.6739 -6.3637 -0.1798 15 6 1.8234 -3.6590 -0.0668 16 35 3.3388 -3.7832 -1.1911 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1545 -1.4191 1.5690 19 1 -0.4930 -5.5524 1.4782 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306725235.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:45 Heat of formation + Delta-G solvation = -6.177342 kcal Electronic energy + Delta-G solvation = -10162.286809 eV Core-core repulsion = 7943.599041 eV Total energy + Delta-G solvation = -2218.687768 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.36592 -37.44710 -36.05728 -33.70029 -31.65383 -30.50343 -27.66190 -23.78580 -23.33566 -19.60141 -17.76648 -17.13745 -16.63749 -16.18481 -14.95605 -14.73497 -13.61389 -13.55702 -13.18792 -13.07610 -12.82610 -12.69007 -12.12643 -12.01738 -11.87224 -11.20910 -10.71382 -10.15651 -9.87242 -9.58414 -8.92252 -6.64210 0.41084 0.59487 0.92509 1.34520 1.41415 1.52051 1.55978 2.15529 2.55044 3.40000 4.05713 4.33926 4.56486 4.88514 5.00786 5.13105 5.39746 5.77425 6.18477 6.42229 6.55727 7.47918 8.06180 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.010980 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.514203 B = 2549.560021 C = 3437.922612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.041 3.959 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.065 3.935 10 C 0.039 3.961 11 N -0.467 5.467 12 C -0.049 4.049 13 C -0.014 4.014 14 Cl -0.063 7.063 15 C -0.197 4.197 16 Br -0.049 7.049 17 H 0.303 0.697 18 H 0.154 0.846 19 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 -1.619 -1.635 5.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.118 0.882 9 C 0.058 3.942 10 C -0.129 4.129 11 N -0.175 5.175 12 C -0.201 4.201 13 C -0.045 4.045 14 Cl -0.034 7.034 15 C -0.283 4.283 16 Br 0.036 6.964 17 H 0.115 0.885 18 H 0.171 0.829 19 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.470 -1.716 -1.587 5.045 hybrid contribution 0.504 0.338 -0.393 0.723 sum 4.975 -1.378 -1.980 5.529 Atomic orbital electron populations 1.69764 1.09261 1.32461 1.30329 1.26949 0.95514 1.04998 0.90502 0.85110 0.78897 0.74579 0.80611 1.18045 1.18609 1.17882 1.20063 0.99249 0.91013 1.36708 0.88201 1.18602 0.92885 0.91929 0.90767 1.23111 0.95978 0.95553 0.98250 1.67248 1.29760 0.98802 1.21719 1.22094 0.97865 0.95785 1.04357 1.21720 0.97491 0.85433 0.99889 1.98285 1.89941 1.25496 1.89699 1.22018 1.01728 0.94726 1.09846 1.96316 1.36976 1.98460 1.64667 0.88542 0.82918 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.65 10.97 21.83 0.24 -36.41 13 2 C 0.04 1.79 5.15 85.26 0.44 2.23 13 3 Si 0.99 33.26 29.60 68.60 2.03 35.29 13 4 H -0.26 -8.47 7.11 99.48 0.71 -7.76 13 5 H -0.26 -8.27 7.11 99.48 0.71 -7.56 13 6 H -0.25 -8.42 7.11 99.48 0.71 -7.71 13 7 C -0.44 -21.19 8.54 23.46 0.20 -20.99 13 8 H 0.10 4.61 6.98 -2.91 -0.02 4.59 13 9 C 0.07 3.28 5.59 -21.18 -0.12 3.16 13 10 C 0.04 1.99 9.90 85.36 0.85 2.84 13 11 N -0.47 -22.90 10.33 -193.58 -2.00 -24.90 13 12 C -0.05 -2.19 10.97 84.74 0.93 -1.26 13 13 C -0.01 -0.64 6.34 22.38 0.14 -0.49 13 14 Cl -0.06 -2.30 27.89 -2.72 -0.08 -2.37 13 15 C -0.20 -9.25 6.33 23.01 0.15 -9.11 13 16 Br -0.05 -1.97 31.22 -20.37 -0.64 -2.61 13 17 H 0.30 12.40 8.30 -92.71 -0.77 11.63 13 18 H 0.15 7.80 6.15 -2.91 -0.02 7.79 13 19 H 0.16 6.11 8.06 -2.91 -0.02 6.09 13 Total: -1.00 -50.99 213.63 3.43 -47.56 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.29 Total: 7.07 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 2.58 Total: -23.63 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -1.76 Total: -61.31 kcal Atomic # 14 Polarization: 33.26 SS G_CDS: 2.03 Total: 35.29 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.37 kcal Atomic # 35 Polarization: -1.97 SS G_CDS: -0.64 Total: -2.61 kcal Total: -50.99 3.43 -47.56 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306725235.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.380 kcal (2) G-P(sol) polarization free energy of solvation -50.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds