Wall clock time and date at job start Mon Mar 30 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48501 * 109.47140 * 275.32733 * 3 2 1 5 5 H 1.48495 * 109.47521 * 35.33005 * 3 2 1 6 6 H 1.48506 * 109.46925 * 155.33067 * 3 2 1 7 7 C 1.46580 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07988 * 119.99834 * 27.40780 * 7 2 1 9 9 C 1.40173 * 119.99592 * 207.41412 * 7 2 1 10 10 C 1.41346 * 120.30323 * 220.57455 * 9 7 2 11 11 C 1.36339 * 119.85625 * 180.02562 * 10 9 7 12 12 C 1.38902 * 120.49758 * 0.25822 * 11 10 9 13 13 N 1.48011 * 119.69135 * 179.72349 * 12 11 10 14 14 O 1.31703 * 119.99798 * 359.97438 * 13 12 11 15 15 O 1.31694 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.38724 * 120.62213 * 359.48164 * 12 11 10 17 17 Cl 1.73594 * 119.93644 * 180.28488 * 16 12 11 18 18 C 1.37901 * 120.12662 * 0.51683 * 16 12 11 19 19 Cl 1.73602 * 120.24730 * 179.76710 * 18 16 12 20 20 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.07068 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.75169 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.3637 2.1115 -1.3940 5 1 1.4872 2.6176 0.8096 6 1 3.5782 1.4103 0.5844 7 6 2.0278 -1.2694 -0.0006 8 1 1.5788 -2.1519 -0.4315 9 6 3.3115 -1.3377 0.5583 10 6 4.3263 -2.0901 -0.0756 11 6 5.5715 -2.1507 0.4763 12 6 5.8506 -1.4822 1.6615 13 7 7.2069 -1.5652 2.2481 14 8 8.1424 -2.2708 1.6469 15 8 7.4783 -0.9334 3.3713 16 6 4.8714 -0.7335 2.2979 17 17 5.2417 0.1008 3.7745 18 6 3.6030 -0.6546 1.7623 19 17 2.3736 0.2766 2.5594 20 1 -0.4850 0.8400 -0.0004 21 1 4.1154 -2.6167 -0.9947 22 1 6.3455 -2.7265 -0.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306893453.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:27 Heat of formation + Delta-G solvation = 23.720464 kcal Electronic energy + Delta-G solvation = -15084.612078 eV Core-core repulsion = 12081.648462 eV Total energy + Delta-G solvation = -3002.963616 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99262 -37.23321 -36.00450 -35.83990 -34.49365 -33.12006 -31.49931 -30.08220 -27.33089 -23.99572 -22.19857 -21.20934 -18.78179 -17.67228 -16.92034 -16.24719 -15.06700 -14.87489 -14.83219 -14.14461 -13.57075 -13.52352 -13.33833 -12.40679 -12.09612 -11.63824 -11.49836 -11.06943 -10.84409 -10.78999 -10.54537 -10.06678 -9.86550 -9.72364 -9.60314 -9.24998 -8.56942 -8.32603 -8.00261 -5.50673 0.41847 1.82196 2.00740 2.19514 2.60956 2.65612 2.69401 2.75551 2.96193 3.38581 3.52645 4.26327 5.36715 5.58229 5.63542 5.90358 5.93307 6.19492 6.59000 6.69807 6.90688 7.02166 7.16989 7.46052 7.58500 8.06897 8.83007 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.009616 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.644041 B = 2911.084621 C = 3469.918517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.228 1.228 7 C -0.323 4.323 8 H 0.123 0.877 9 C 0.072 3.928 10 C -0.182 4.182 11 C -0.021 4.021 12 C -0.133 4.133 13 N 0.036 4.964 14 O -0.289 6.289 15 O -0.252 6.252 16 C 0.077 3.923 17 Cl -0.034 7.034 18 C -0.128 4.128 19 Cl -0.057 7.057 20 H 0.311 0.689 21 H 0.135 0.865 22 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 2.162 -1.569 4.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.159 4.159 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.150 1.150 7 C -0.346 4.346 8 H 0.141 0.859 9 C 0.067 3.933 10 C -0.203 4.203 11 C -0.040 4.040 12 C -0.232 4.232 13 N 0.477 4.523 14 O -0.451 6.451 15 O -0.424 6.424 16 C 0.047 3.953 17 Cl -0.005 7.005 18 C -0.157 4.157 19 Cl -0.028 7.028 20 H 0.124 0.876 21 H 0.152 0.848 22 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.679 2.367 -1.518 4.631 hybrid contribution 0.338 0.776 0.422 0.946 sum -3.342 3.143 -1.096 4.717 Atomic orbital electron populations 1.68985 1.09469 1.33679 1.19527 1.28221 0.95042 1.03244 0.89422 0.86020 0.83530 0.77428 0.80214 1.19146 1.18589 1.15006 1.21463 0.94437 0.96336 1.22329 0.85934 1.17496 0.93560 0.92115 0.90090 1.20794 0.90926 1.07133 1.01452 1.20163 0.97992 0.94818 0.91067 1.19096 0.81199 1.19791 1.03123 1.49870 1.03224 0.98331 1.00870 1.96135 1.40592 1.43831 1.64575 1.96208 1.89624 1.47811 1.08760 1.20127 0.91741 0.94405 0.89006 1.98385 1.94401 1.75533 1.32135 1.20522 0.88036 1.09453 0.97726 1.98211 1.54405 1.71579 1.78597 0.87637 0.84751 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -13.37 13.89 55.99 0.78 -12.59 14 2 C 0.08 1.49 4.28 -15.18 -0.06 1.43 14 3 Si 0.91 16.48 24.48 -169.99 -4.16 12.32 14 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 5 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 6 H -0.23 -4.49 5.62 56.52 0.32 -4.18 14 7 C -0.32 -6.34 9.47 -35.49 -0.34 -6.68 14 8 H 0.12 2.35 8.06 -52.49 -0.42 1.93 14 9 C 0.07 1.44 4.80 -106.76 -0.51 0.93 14 10 C -0.18 -3.35 9.76 -39.08 -0.38 -3.73 14 11 C -0.02 -0.41 9.50 -40.02 -0.38 -0.79 14 12 C -0.13 -2.99 6.91 -79.53 -0.55 -3.54 14 13 N 0.04 0.89 4.98 34.17 0.17 1.06 14 14 O -0.29 -7.11 19.12 -31.57 -0.60 -7.71 14 15 O -0.25 -6.26 16.54 -31.56 -0.52 -6.78 14 16 C 0.08 1.69 6.32 -39.53 -0.25 1.44 14 17 Cl -0.03 -0.71 24.73 -51.86 -1.28 -1.99 14 18 C -0.13 -2.68 4.53 -38.48 -0.17 -2.86 14 19 Cl -0.06 -1.11 21.68 -51.86 -1.12 -2.24 14 20 H 0.31 5.23 8.27 -40.82 -0.34 4.89 14 21 H 0.13 2.06 8.06 -52.48 -0.42 1.64 14 22 H 0.14 2.42 7.55 -52.48 -0.40 2.03 14 LS Contribution 232.75 15.07 3.51 3.51 Total: -1.00 -23.98 232.75 -6.35 -30.33 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -0.46 Total: -2.11 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.65 Total: -13.80 kcal Atomic # 7 Polarization: -12.48 SS G_CDS: 0.95 Total: -11.53 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.13 Total: -14.49 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -4.16 Total: 12.32 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -2.41 Total: -4.23 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -23.98 -6.35 -30.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306893453.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.048 kcal (2) G-P(sol) polarization free energy of solvation -23.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds