Wall clock time and date at job start Mon Mar 30 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48501 * 109.47140 * 275.32733 * 3 2 1 5 5 H 1.48495 * 109.47521 * 35.33005 * 3 2 1 6 6 H 1.48506 * 109.46925 * 155.33067 * 3 2 1 7 7 C 1.46580 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07988 * 119.99834 * 27.40780 * 7 2 1 9 9 C 1.40173 * 119.99592 * 207.41412 * 7 2 1 10 10 C 1.41346 * 120.30323 * 220.57455 * 9 7 2 11 11 C 1.36339 * 119.85625 * 180.02562 * 10 9 7 12 12 C 1.38902 * 120.49758 * 0.25822 * 11 10 9 13 13 N 1.48011 * 119.69135 * 179.72349 * 12 11 10 14 14 O 1.31703 * 119.99798 * 359.97438 * 13 12 11 15 15 O 1.31694 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.38724 * 120.62213 * 359.48164 * 12 11 10 17 17 Cl 1.73594 * 119.93644 * 180.28488 * 16 12 11 18 18 C 1.37901 * 120.12662 * 0.51683 * 16 12 11 19 19 Cl 1.73602 * 120.24730 * 179.76710 * 18 16 12 20 20 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.07068 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.75169 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.3637 2.1115 -1.3940 5 1 1.4872 2.6176 0.8096 6 1 3.5782 1.4103 0.5844 7 6 2.0278 -1.2694 -0.0006 8 1 1.5788 -2.1519 -0.4315 9 6 3.3115 -1.3377 0.5583 10 6 4.3263 -2.0901 -0.0756 11 6 5.5715 -2.1507 0.4763 12 6 5.8506 -1.4822 1.6615 13 7 7.2069 -1.5652 2.2481 14 8 8.1424 -2.2708 1.6469 15 8 7.4783 -0.9334 3.3713 16 6 4.8714 -0.7335 2.2979 17 17 5.2417 0.1008 3.7745 18 6 3.6030 -0.6546 1.7623 19 17 2.3736 0.2766 2.5594 20 1 -0.4850 0.8400 -0.0004 21 1 4.1154 -2.6167 -0.9947 22 1 6.3455 -2.7265 -0.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306893453.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:27 Heat of formation + Delta-G solvation = 11.490240 kcal Electronic energy + Delta-G solvation = -15085.142420 eV Core-core repulsion = 12081.648462 eV Total energy + Delta-G solvation = -3003.493958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58243 -38.87663 -37.61420 -37.44704 -36.10195 -34.81018 -33.11478 -31.64691 -28.99467 -25.63919 -23.77191 -22.81185 -20.36833 -19.30974 -18.58969 -17.82497 -16.65961 -16.53209 -16.40950 -15.76457 -15.11870 -15.07015 -14.82735 -13.91017 -13.67933 -13.21985 -13.06879 -12.70051 -12.39854 -12.31532 -12.07752 -11.76227 -11.47165 -11.41301 -11.22590 -10.91865 -10.18038 -9.91645 -9.58117 -7.11067 -1.35288 0.28633 0.38025 0.57552 1.06707 1.13929 1.16935 1.31247 1.38626 1.92515 1.99301 2.68251 3.82527 4.01120 4.09895 4.33662 4.38587 4.67195 5.08423 5.14407 5.33105 5.42585 5.57551 5.84185 6.00614 6.36685 7.29011 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.009616 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.644041 B = 2911.084621 C = 3469.918517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.060 3.940 3 Si 0.924 3.076 4 H -0.250 1.250 5 H -0.250 1.250 6 H -0.252 1.252 7 C -0.273 4.273 8 H 0.140 0.860 9 C 0.039 3.961 10 C -0.153 4.153 11 C -0.039 4.039 12 C -0.140 4.140 13 N 0.040 4.960 14 O -0.342 6.342 15 O -0.311 6.311 16 C 0.054 3.946 17 Cl -0.035 7.035 18 C -0.119 4.119 19 Cl -0.048 7.048 20 H 0.328 0.672 21 H 0.174 0.826 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 2.407 -3.548 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.178 4.178 3 Si 0.745 3.255 4 H -0.176 1.176 5 H -0.174 1.174 6 H -0.176 1.176 7 C -0.296 4.296 8 H 0.157 0.843 9 C 0.034 3.966 10 C -0.174 4.174 11 C -0.059 4.059 12 C -0.244 4.244 13 N 0.459 4.541 14 O -0.491 6.491 15 O -0.468 6.468 16 C 0.024 3.976 17 Cl -0.006 7.006 18 C -0.150 4.150 19 Cl -0.019 7.019 20 H 0.142 0.858 21 H 0.191 0.809 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.902 2.613 -3.420 8.134 hybrid contribution 0.617 0.807 0.769 1.274 sum -6.286 3.420 -2.651 7.631 Atomic orbital electron populations 1.68919 1.09506 1.35421 1.17071 1.28471 0.95445 1.03788 0.90095 0.85755 0.81858 0.76801 0.81091 1.17560 1.17387 1.17595 1.21950 0.93387 0.96604 1.17619 0.84298 1.17734 0.94441 0.93797 0.90630 1.21155 0.89562 1.04869 1.01775 1.20348 0.99197 0.95668 0.90679 1.19550 0.80461 1.20342 1.04035 1.49972 1.03832 0.99167 1.01136 1.96077 1.41640 1.45983 1.65360 1.96158 1.90184 1.50157 1.10258 1.20300 0.92241 0.95425 0.89596 1.98372 1.94501 1.75478 1.32215 1.20758 0.87797 1.08396 0.98011 1.98212 1.53733 1.71408 1.78597 0.85794 0.80899 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -22.81 13.89 23.22 0.32 -22.48 14 2 C 0.06 2.02 4.28 87.22 0.37 2.40 14 3 Si 0.92 29.94 24.48 68.60 1.68 31.62 14 4 H -0.25 -7.59 7.11 99.48 0.71 -6.89 14 5 H -0.25 -7.69 7.11 99.48 0.71 -6.99 14 6 H -0.25 -9.37 5.62 99.48 0.56 -8.81 14 7 C -0.27 -9.30 9.47 24.92 0.24 -9.06 14 8 H 0.14 4.42 8.06 -2.92 -0.02 4.39 14 9 C 0.04 1.41 4.80 -21.25 -0.10 1.31 14 10 C -0.15 -5.07 9.76 22.59 0.22 -4.84 14 11 C -0.04 -1.50 9.50 21.99 0.21 -1.29 14 12 C -0.14 -6.34 6.91 36.65 0.25 -6.09 14 13 N 0.04 2.07 4.98 -45.81 -0.23 1.84 14 14 O -0.34 -17.89 19.12 3.51 0.07 -17.82 14 15 O -0.31 -16.51 16.54 3.53 0.06 -16.46 14 16 C 0.05 2.36 6.32 22.31 0.14 2.50 14 17 Cl -0.04 -1.49 24.73 -2.72 -0.07 -1.56 14 18 C -0.12 -4.77 4.53 22.98 0.10 -4.66 14 19 Cl -0.05 -1.78 21.68 -2.72 -0.06 -1.84 14 20 H 0.33 9.33 8.27 -92.71 -0.77 8.56 14 21 H 0.17 4.34 8.06 -2.91 -0.02 4.32 14 22 H 0.15 5.18 7.55 -2.91 -0.02 5.16 14 Total: -1.00 -51.04 232.75 4.34 -46.70 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 1.14 Total: -0.25 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 1.43 Total: -19.75 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.09 Total: -20.64 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: 0.13 Total: -34.28 kcal Atomic # 14 Polarization: 29.94 SS G_CDS: 1.68 Total: 31.62 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.13 Total: -3.40 kcal Total: -51.04 4.34 -46.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306893453.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.187 kcal (2) G-P(sol) polarization free energy of solvation -51.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds