Wall clock time and date at job start Mon Mar 30 2020 07:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86807 * 119.99496 * 2 1 4 4 H 1.48496 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 299.99580 * 3 2 1 6 6 H 1.48496 * 109.47258 * 59.99920 * 3 2 1 7 7 C 1.39927 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00419 * 161.51560 * 7 2 1 9 9 C 1.41337 * 120.00101 * 341.51572 * 7 2 1 10 10 C 1.40727 * 120.65708 * 336.33984 * 9 7 2 11 11 N 1.31470 * 120.41962 * 180.02562 * 10 9 7 12 12 C 1.32213 * 122.00485 * 0.02562 * 11 10 9 13 13 Br 1.89098 * 119.33945 * 180.02562 * 12 11 10 14 14 C 1.38624 * 121.32213 * 359.97355 * 12 11 10 15 15 C 1.38176 * 119.39717 * 0.30526 * 14 12 11 16 16 Cl 1.73600 * 120.91075 * 179.72158 * 15 14 12 17 17 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 18 18 H 1.08002 * 119.79397 * 0.03991 * 10 9 7 19 19 H 1.07996 * 120.30448 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6179 0.0000 4 1 3.7023 1.3466 0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3966 1.2124 7 6 2.0081 -1.2118 0.0005 8 1 3.0464 -1.2360 -0.2960 9 6 1.3562 -2.4041 0.3891 10 6 0.2231 -2.3635 1.2227 11 7 -0.3794 -3.4755 1.5817 12 6 0.0450 -4.6625 1.1831 13 35 -0.8795 -6.2136 1.7446 14 6 1.1535 -4.7928 0.3610 15 6 1.8331 -3.6606 -0.0458 16 17 3.2303 -3.7786 -1.0693 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1542 -1.4128 1.5695 19 1 1.4857 -5.7706 0.0449 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307167047.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:47 Heat of formation + Delta-G solvation = -7.991731 kcal Electronic energy + Delta-G solvation = -10093.636305 eV Core-core repulsion = 7874.869859 eV Total energy + Delta-G solvation = -2218.766446 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34048 -37.16524 -36.14394 -32.90044 -32.59382 -30.73980 -27.29133 -24.07380 -23.15267 -19.60219 -17.84295 -17.14633 -16.63337 -15.76584 -14.93828 -14.59650 -14.31594 -13.55057 -13.20947 -12.98474 -12.87118 -12.68203 -12.04133 -11.60208 -11.43130 -11.20372 -11.13589 -10.19829 -10.06263 -9.60294 -8.94627 -6.62392 0.46811 0.62488 0.79364 1.40526 1.48483 1.58173 1.62348 2.14415 2.50634 3.38740 4.05411 4.41812 4.58690 4.95224 5.02919 5.06908 5.31368 5.77489 6.16015 6.40277 6.53173 7.39121 8.03296 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.034286 B = 0.007481 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.472528 B = 3742.165402 C = 4485.744327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.038 3.962 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.431 4.431 8 H 0.099 0.901 9 C 0.051 3.949 10 C 0.043 3.957 11 N -0.463 5.463 12 C -0.036 4.036 13 Br -0.037 7.037 14 C -0.081 4.081 15 C -0.132 4.132 16 Cl -0.075 7.075 17 H 0.304 0.696 18 H 0.155 0.845 19 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -3.385 0.623 3.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.459 4.459 8 H 0.117 0.883 9 C 0.044 3.956 10 C -0.127 4.127 11 N -0.172 5.172 12 C -0.246 4.246 13 Br 0.046 6.954 14 C -0.104 4.104 15 C -0.166 4.166 16 Cl -0.046 7.046 17 H 0.115 0.885 18 H 0.171 0.829 19 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.412 -3.881 1.253 4.098 hybrid contribution 1.059 0.812 -0.790 1.551 sum 1.471 -3.068 0.463 3.434 Atomic orbital electron populations 1.69779 1.09348 1.32469 1.29820 1.27003 0.95515 1.05186 0.90569 0.84995 0.79561 0.74999 0.79462 1.17645 1.18650 1.18273 1.20083 0.99239 0.91092 1.35478 0.88267 1.18728 0.93099 0.92689 0.91036 1.22916 0.96298 0.94581 0.98855 1.66794 1.30285 0.98219 1.21920 1.21742 1.00683 0.91547 1.10667 1.96392 1.77725 1.30282 1.91041 1.21347 0.94105 0.98272 0.96658 1.21047 0.96043 0.94526 1.04991 1.98224 1.40936 1.98261 1.67179 0.88469 0.82850 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.22 10.97 21.82 0.24 -35.98 13 2 C 0.04 1.65 5.14 85.25 0.44 2.09 13 3 Si 0.99 32.77 29.60 68.60 2.03 34.80 13 4 H -0.25 -8.26 7.11 99.48 0.71 -7.56 13 5 H -0.26 -8.34 7.11 99.48 0.71 -7.64 13 6 H -0.26 -8.21 7.11 99.48 0.71 -7.50 13 7 C -0.43 -20.37 8.60 23.44 0.20 -20.17 13 8 H 0.10 4.51 7.18 -2.91 -0.02 4.49 13 9 C 0.05 2.52 5.59 -21.17 -0.12 2.40 13 10 C 0.04 2.18 9.90 85.36 0.85 3.03 13 11 N -0.46 -23.14 10.29 -188.58 -1.94 -25.08 13 12 C -0.04 -1.66 7.17 84.73 0.61 -1.05 13 13 Br -0.04 -1.36 33.85 -20.37 -0.69 -2.05 13 14 C -0.08 -3.53 9.62 22.35 0.21 -3.31 13 15 C -0.13 -6.09 6.42 23.00 0.15 -5.94 13 16 Cl -0.07 -2.96 27.77 -2.72 -0.08 -3.03 13 17 H 0.30 12.26 8.30 -92.71 -0.77 11.49 13 18 H 0.15 7.89 6.14 -2.91 -0.02 7.87 13 19 H 0.14 5.32 8.06 -2.91 -0.02 5.29 13 Total: -1.00 -51.04 215.92 3.19 -47.85 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.29 Total: 6.45 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 2.34 Total: -22.96 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -1.70 Total: -61.06 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.08 Total: -3.03 kcal Atomic # 35 Polarization: -1.36 SS G_CDS: -0.69 Total: -2.05 kcal Total: -51.04 3.19 -47.85 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307167047.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.854 kcal (2) G-P(sol) polarization free energy of solvation -51.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds