Wall clock time and date at job start Mon Mar 30 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99759 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41390 * 119.99735 * 0.27892 * 7 2 1 10 10 C 1.40607 * 119.81010 * 179.44535 * 9 7 2 11 11 C 1.38303 * 118.99395 * 179.79311 * 10 9 7 12 12 Br 1.89102 * 120.70916 * 180.22097 * 11 10 9 13 13 C 1.39007 * 118.58975 * 0.47662 * 11 10 9 14 14 C 1.38908 * 119.52807 * 359.74480 * 13 11 10 15 15 Cl 1.73606 * 119.50294 * 179.97438 * 14 13 11 16 16 N 1.31525 * 120.99244 * 0.02562 * 14 13 11 17 17 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 18 18 H 1.07998 * 120.50167 * 0.02562 * 10 9 7 19 19 H 1.08001 * 120.23707 * 179.72561 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3007 -2.4372 -0.0049 10 6 2.0077 -3.6525 -0.0161 11 6 1.2992 -4.8403 -0.0169 12 35 2.2007 -6.5025 -0.0255 13 6 -0.0899 -4.7863 -0.0167 14 6 -0.7270 -3.5519 -0.0103 15 17 -2.4618 -3.4852 -0.0106 16 7 -0.0357 -2.4330 -0.0049 17 1 -0.4849 0.8400 -0.0004 18 1 3.0876 -3.6584 -0.0202 19 1 -0.6696 -5.6975 -0.0217 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307262531.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:01 Heat of formation + Delta-G solvation = 17.498474 kcal Electronic energy + Delta-G solvation = -10054.003954 eV Core-core repulsion = 7836.342846 eV Total energy + Delta-G solvation = -2217.661108 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.46966 -35.57943 -33.90885 -31.88989 -30.14264 -28.88017 -26.02728 -21.86533 -21.54899 -17.68609 -16.04196 -14.97861 -14.76478 -14.40036 -13.16155 -13.05957 -12.37934 -11.48125 -11.34451 -11.17173 -11.11431 -10.88173 -10.42520 -10.38047 -10.16615 -9.65039 -9.39764 -8.25579 -8.01640 -7.86692 -6.68949 -4.84774 2.26040 2.34022 2.39643 2.98064 2.98995 3.02599 3.06030 3.77333 4.42024 5.46536 6.04557 6.25887 6.33790 6.49729 6.88563 6.99049 7.13534 7.36177 7.89021 8.26715 8.52641 9.58986 10.02530 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.008334 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.956748 B = 3358.730568 C = 4513.840121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.062 3.938 3 Si 0.915 3.085 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.410 4.410 8 H 0.094 0.906 9 C 0.267 3.733 10 C -0.242 4.242 11 C 0.000 4.000 12 Br -0.086 7.086 13 C -0.288 4.288 14 C 0.228 3.772 15 Cl -0.081 7.081 16 N -0.474 5.474 17 H 0.279 0.721 18 H 0.117 0.883 19 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -5.675 -0.033 6.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.165 4.165 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.440 4.440 8 H 0.112 0.888 9 C 0.143 3.857 10 C -0.267 4.267 11 C -0.085 4.085 12 Br -0.002 7.002 13 C -0.314 4.314 14 C 0.053 3.947 15 Cl -0.053 7.053 16 N -0.189 5.189 17 H 0.091 0.909 18 H 0.135 0.865 19 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.879 -5.315 -0.033 5.638 hybrid contribution 0.319 0.251 -0.006 0.406 sum 2.198 -5.064 -0.039 5.521 Atomic orbital electron populations 1.70114 1.07314 1.28633 1.25808 1.26174 0.95064 1.01578 0.93699 0.86140 0.80778 0.80433 0.78857 1.18113 1.19547 1.19538 1.19786 0.94732 0.88896 1.40573 0.88782 1.18349 0.86268 0.91781 0.89295 1.21803 0.99576 0.91461 1.13896 1.21389 0.93786 0.89500 1.03798 1.96492 1.77999 1.27795 1.97892 1.20732 0.92224 0.96744 1.21686 1.21423 0.85457 0.90323 0.97467 1.98298 1.11355 1.98808 1.96841 1.67922 1.07553 1.25457 1.17989 0.90942 0.86459 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.68 11.46 55.55 0.64 -17.05 13 2 C 0.06 1.49 5.50 -17.34 -0.10 1.39 13 3 Si 0.91 17.36 29.56 -169.99 -5.02 12.34 13 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 13 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 13 6 H -0.27 -5.09 7.11 56.52 0.40 -4.68 13 7 C -0.41 -10.18 9.14 -37.71 -0.34 -10.52 13 8 H 0.09 2.14 7.85 -52.49 -0.41 1.73 13 9 C 0.27 6.91 6.55 -84.99 -0.56 6.35 13 10 C -0.24 -5.62 9.61 -38.66 -0.37 -5.99 13 11 C 0.00 0.00 6.26 -39.27 -0.25 -0.25 13 12 Br -0.09 -1.53 33.76 -68.01 -2.30 -3.82 13 13 C -0.29 -6.40 9.67 -39.05 -0.38 -6.78 13 14 C 0.23 5.50 7.27 -17.43 -0.13 5.37 13 15 Cl -0.08 -1.70 29.10 -51.86 -1.51 -3.21 13 16 N -0.47 -12.62 7.84 -8.25 -0.06 -12.68 13 17 H 0.28 6.37 8.29 -40.82 -0.34 6.03 13 18 H 0.12 2.50 8.06 -52.49 -0.42 2.08 13 19 H 0.12 2.33 8.06 -52.49 -0.42 1.91 13 LS Contribution 219.32 15.07 3.31 3.31 Total: -1.00 -26.06 219.32 -7.46 -33.52 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -0.39 Total: -1.99 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.12 Total: -10.43 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.57 Total: -29.73 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.02 Total: 12.34 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -1.51 Total: -3.21 kcal Atomic # 35 Polarization: -1.53 SS G_CDS: -2.30 Total: -3.82 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -26.06 -7.46 -33.52 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307262531.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.022 kcal (2) G-P(sol) polarization free energy of solvation -26.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds