Wall clock time and date at job start Mon Mar 30 2020 07:13:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30744 * 1
3 3 Si 1.86803 * 119.99895 * 2 1
4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.46534 * 299.99816 * 3 2 1
6 6 H 1.48498 * 109.47283 * 59.99759 * 3 2 1
7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1
9 9 C 1.41390 * 119.99735 * 0.27892 * 7 2 1
10 10 C 1.40607 * 119.81010 * 179.44535 * 9 7 2
11 11 C 1.38303 * 118.99395 * 179.79311 * 10 9 7
12 12 Br 1.89102 * 120.70916 * 180.22097 * 11 10 9
13 13 C 1.39007 * 118.58975 * 0.47662 * 11 10 9
14 14 C 1.38908 * 119.52807 * 359.74480 * 13 11 10
15 15 Cl 1.73606 * 119.50294 * 179.97438 * 14 13 11
16 16 N 1.31525 * 120.99244 * 0.02562 * 14 13 11
17 17 H 0.96991 * 119.99866 * 0.02562 * 1 2 3
18 18 H 1.07998 * 120.50167 * 0.02562 * 10 9 7
19 19 H 1.08001 * 120.23707 * 179.72561 * 13 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6178 0.0000
4 1 3.7014 1.3465 -0.0006
5 1 1.8826 2.3964 -1.2126
6 1 1.8826 2.3965 1.2124
7 6 2.0076 -1.2127 0.0005
8 1 3.0877 -1.2127 0.0001
9 6 1.3007 -2.4372 -0.0049
10 6 2.0077 -3.6525 -0.0161
11 6 1.2992 -4.8403 -0.0169
12 35 2.2007 -6.5025 -0.0255
13 6 -0.0899 -4.7863 -0.0167
14 6 -0.7270 -3.5519 -0.0103
15 17 -2.4618 -3.4852 -0.0106
16 7 -0.0357 -2.4330 -0.0049
17 1 -0.4849 0.8400 -0.0004
18 1 3.0876 -3.6584 -0.0202
19 1 -0.6696 -5.6975 -0.0217
RHF calculation, no. of doubly occupied orbitals= 32
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307262531.mol2 19
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:13:01
Heat of formation + Delta-G solvation = 3.480237 kcal
Electronic energy + Delta-G solvation = -10054.611830 eV
Core-core repulsion = 7836.342846 eV
Total energy + Delta-G solvation = -2218.268984 eV
No. of doubly occupied orbitals = 32
Molecular weight
(most abundant/longest-lived isotopes) = 260.925 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-40.27059 -37.31610 -35.67956 -33.62735 -31.95856 -30.55815 -27.84411 -23.66851
-23.35386 -19.48498 -17.82418 -16.71366 -16.51412 -16.11693 -14.98054 -14.72886
-14.04421 -13.06384 -13.04563 -12.87901 -12.76033 -12.61053 -12.03390 -12.01610
-11.83370 -11.18933 -11.10518 -9.97847 -9.84174 -9.68242 -8.45103 -6.70579
0.53533 0.58487 0.62761 1.28778 1.43269 1.49855 1.59382 2.19569
2.64783 3.61304 4.28152 4.50035 4.57177 4.72580 5.12156 5.19572
5.36098 5.60021 6.06781 6.46356 6.69352 7.76307 8.30073
Molecular weight = 260.93amu
Principal moments of inertia in cm(-1)
A = 0.024029 B = 0.008334 C = 0.006202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.956748 B = 3358.730568 C = 4513.840121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.741 5.741
2 C 0.020 3.980
3 Si 0.993 3.007
4 H -0.248 1.248
5 H -0.267 1.267
6 H -0.267 1.267
7 C -0.438 4.438
8 H 0.106 0.894
9 C 0.237 3.763
10 C -0.250 4.250
11 C -0.008 4.008
12 Br -0.041 7.041
13 C -0.284 4.284
14 C 0.206 3.794
15 Cl -0.063 7.063
16 N -0.508 5.508
17 H 0.285 0.715
18 H 0.131 0.869
19 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.158 -5.965 -0.039 6.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.362 5.362
2 C -0.203 4.203
3 Si 0.813 3.187
4 H -0.171 1.171
5 H -0.192 1.192
6 H -0.192 1.192
7 C -0.468 4.468
8 H 0.124 0.876
9 C 0.113 3.887
10 C -0.275 4.275
11 C -0.093 4.093
12 Br 0.044 6.956
13 C -0.310 4.310
14 C 0.033 3.967
15 Cl -0.035 7.035
16 N -0.224 5.224
17 H 0.096 0.904
18 H 0.149 0.851
19 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 2.750 -5.642 -0.039 6.277
hybrid contribution 0.021 0.165 -0.004 0.166
sum 2.771 -5.478 -0.043 6.139
Atomic orbital electron populations
1.70207 1.09094 1.29912 1.26956 1.27118 0.95757 1.04961 0.92504
0.84977 0.79593 0.75354 0.78797 1.17091 1.19184 1.19162 1.20204
0.95521 0.89563 1.41507 0.87600 1.18816 0.86641 0.93286 0.89974
1.21942 1.00258 0.91393 1.13938 1.21648 0.93987 0.91317 1.02334
1.96510 1.77065 1.24287 1.97728 1.21004 0.92777 0.96836 1.20370
1.21817 0.86566 0.90679 0.97673 1.98288 1.09613 1.98800 1.96760
1.67901 1.08292 1.26833 1.19387 0.90432 0.85106 0.84678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -38.07 11.46 21.84 0.25 -37.82 13
2 C 0.02 0.97 5.50 85.29 0.47 1.44 13
3 Si 0.99 35.27 29.56 68.60 2.03 37.30 13
4 H -0.25 -8.30 7.11 99.48 0.71 -7.60 13
5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 13
6 H -0.27 -9.23 7.11 99.48 0.71 -8.53 13
7 C -0.44 -21.89 9.14 23.48 0.21 -21.67 13
8 H 0.11 4.81 7.85 -2.91 -0.02 4.78 13
9 C 0.24 12.39 6.55 40.22 0.26 12.65 13
10 C -0.25 -11.50 9.61 22.86 0.22 -11.28 13
11 C -0.01 -0.33 6.26 22.47 0.14 -0.19 13
12 Br -0.04 -1.35 33.76 -20.37 -0.69 -2.03 13
13 C -0.28 -12.33 9.67 22.61 0.22 -12.11 13
14 C 0.21 9.93 7.27 84.90 0.62 10.55 13
15 Cl -0.06 -2.60 29.10 -2.72 -0.08 -2.68 13
16 N -0.51 -27.42 7.84 -180.03 -1.41 -28.83 13
17 H 0.28 13.19 8.29 -92.71 -0.77 12.42 13
18 H 0.13 5.47 8.06 -2.91 -0.02 5.45 13
19 H 0.14 5.20 8.06 -2.91 -0.02 5.18 13
Total: -1.00 -55.04 219.32 3.53 -51.52
By element:
Atomic # 1 Polarization: 1.89 SS G_CDS: 1.28 Total: 3.17 kcal
Atomic # 6 Polarization: -22.76 SS G_CDS: 2.14 Total: -20.62 kcal
Atomic # 7 Polarization: -65.49 SS G_CDS: -1.16 Total: -66.65 kcal
Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal
Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal
Atomic # 35 Polarization: -1.35 SS G_CDS: -0.69 Total: -2.03 kcal
Total: -55.04 3.53 -51.52 kcal
The number of atoms in the molecule is 19
The average number of expansion shells was 13.00
The maximum number of expansion shells was 13
The minimum number of expansion shells was 13
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307262531.mol2 19
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.995 kcal
(2) G-P(sol) polarization free energy of solvation -55.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds