Wall clock time and date at job start Mon Mar 30 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99759 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41390 * 119.99735 * 0.27892 * 7 2 1 10 10 C 1.40607 * 119.81010 * 179.44535 * 9 7 2 11 11 C 1.38303 * 118.99395 * 179.79311 * 10 9 7 12 12 Br 1.89102 * 120.70916 * 180.22097 * 11 10 9 13 13 C 1.39007 * 118.58975 * 0.47662 * 11 10 9 14 14 C 1.38908 * 119.52807 * 359.74480 * 13 11 10 15 15 Cl 1.73606 * 119.50294 * 179.97438 * 14 13 11 16 16 N 1.31525 * 120.99244 * 0.02562 * 14 13 11 17 17 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 18 18 H 1.07998 * 120.50167 * 0.02562 * 10 9 7 19 19 H 1.08001 * 120.23707 * 179.72561 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3007 -2.4372 -0.0049 10 6 2.0077 -3.6525 -0.0161 11 6 1.2992 -4.8403 -0.0169 12 35 2.2007 -6.5025 -0.0255 13 6 -0.0899 -4.7863 -0.0167 14 6 -0.7270 -3.5519 -0.0103 15 17 -2.4618 -3.4852 -0.0106 16 7 -0.0357 -2.4330 -0.0049 17 1 -0.4849 0.8400 -0.0004 18 1 3.0876 -3.6584 -0.0202 19 1 -0.6696 -5.6975 -0.0217 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307262531.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:01 Heat of formation + Delta-G solvation = 3.480237 kcal Electronic energy + Delta-G solvation = -10054.611830 eV Core-core repulsion = 7836.342846 eV Total energy + Delta-G solvation = -2218.268984 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.27059 -37.31610 -35.67956 -33.62735 -31.95856 -30.55815 -27.84411 -23.66851 -23.35386 -19.48498 -17.82418 -16.71366 -16.51412 -16.11693 -14.98054 -14.72886 -14.04421 -13.06384 -13.04563 -12.87901 -12.76033 -12.61053 -12.03390 -12.01610 -11.83370 -11.18933 -11.10518 -9.97847 -9.84174 -9.68242 -8.45103 -6.70579 0.53533 0.58487 0.62761 1.28778 1.43269 1.49855 1.59382 2.19569 2.64783 3.61304 4.28152 4.50035 4.57177 4.72580 5.12156 5.19572 5.36098 5.60021 6.06781 6.46356 6.69352 7.76307 8.30073 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.008334 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.956748 B = 3358.730568 C = 4513.840121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.020 3.980 3 Si 0.993 3.007 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.438 4.438 8 H 0.106 0.894 9 C 0.237 3.763 10 C -0.250 4.250 11 C -0.008 4.008 12 Br -0.041 7.041 13 C -0.284 4.284 14 C 0.206 3.794 15 Cl -0.063 7.063 16 N -0.508 5.508 17 H 0.285 0.715 18 H 0.131 0.869 19 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -5.965 -0.039 6.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.203 4.203 3 Si 0.813 3.187 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.124 0.876 9 C 0.113 3.887 10 C -0.275 4.275 11 C -0.093 4.093 12 Br 0.044 6.956 13 C -0.310 4.310 14 C 0.033 3.967 15 Cl -0.035 7.035 16 N -0.224 5.224 17 H 0.096 0.904 18 H 0.149 0.851 19 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.750 -5.642 -0.039 6.277 hybrid contribution 0.021 0.165 -0.004 0.166 sum 2.771 -5.478 -0.043 6.139 Atomic orbital electron populations 1.70207 1.09094 1.29912 1.26956 1.27118 0.95757 1.04961 0.92504 0.84977 0.79593 0.75354 0.78797 1.17091 1.19184 1.19162 1.20204 0.95521 0.89563 1.41507 0.87600 1.18816 0.86641 0.93286 0.89974 1.21942 1.00258 0.91393 1.13938 1.21648 0.93987 0.91317 1.02334 1.96510 1.77065 1.24287 1.97728 1.21004 0.92777 0.96836 1.20370 1.21817 0.86566 0.90679 0.97673 1.98288 1.09613 1.98800 1.96760 1.67901 1.08292 1.26833 1.19387 0.90432 0.85106 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.07 11.46 21.84 0.25 -37.82 13 2 C 0.02 0.97 5.50 85.29 0.47 1.44 13 3 Si 0.99 35.27 29.56 68.60 2.03 37.30 13 4 H -0.25 -8.30 7.11 99.48 0.71 -7.60 13 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 13 6 H -0.27 -9.23 7.11 99.48 0.71 -8.53 13 7 C -0.44 -21.89 9.14 23.48 0.21 -21.67 13 8 H 0.11 4.81 7.85 -2.91 -0.02 4.78 13 9 C 0.24 12.39 6.55 40.22 0.26 12.65 13 10 C -0.25 -11.50 9.61 22.86 0.22 -11.28 13 11 C -0.01 -0.33 6.26 22.47 0.14 -0.19 13 12 Br -0.04 -1.35 33.76 -20.37 -0.69 -2.03 13 13 C -0.28 -12.33 9.67 22.61 0.22 -12.11 13 14 C 0.21 9.93 7.27 84.90 0.62 10.55 13 15 Cl -0.06 -2.60 29.10 -2.72 -0.08 -2.68 13 16 N -0.51 -27.42 7.84 -180.03 -1.41 -28.83 13 17 H 0.28 13.19 8.29 -92.71 -0.77 12.42 13 18 H 0.13 5.47 8.06 -2.91 -0.02 5.45 13 19 H 0.14 5.20 8.06 -2.91 -0.02 5.18 13 Total: -1.00 -55.04 219.32 3.53 -51.52 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.28 Total: 3.17 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 2.14 Total: -20.62 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.16 Total: -66.65 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Atomic # 35 Polarization: -1.35 SS G_CDS: -0.69 Total: -2.03 kcal Total: -55.04 3.53 -51.52 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307262531.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.995 kcal (2) G-P(sol) polarization free energy of solvation -55.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds