Wall clock time and date at job start Mon Mar 30 2020 07:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29500 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47442 * 274.99244 * 3 2 1 5 5 H 1.48502 * 109.46884 * 34.99466 * 3 2 1 6 6 H 1.48495 * 109.46963 * 154.99005 * 3 2 1 7 7 C 1.46556 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 192.44414 * 7 2 1 9 9 C 1.40187 * 120.00060 * 12.44991 * 7 2 1 10 10 C 1.41359 * 120.26510 * 25.20778 * 9 7 2 11 11 C 1.36456 * 119.69828 * 179.97438 * 10 9 7 12 12 Cl 1.73593 * 119.87068 * 180.02562 * 11 10 9 13 13 C 1.39183 * 120.25379 * 359.97438 * 11 10 9 14 14 Cl 1.73607 * 119.72453 * 179.97438 * 13 11 10 15 15 C 1.38988 * 120.55021 * 359.97438 * 13 11 10 16 16 N 1.48021 * 119.85310 * 179.72428 * 15 13 11 17 17 O 1.31705 * 119.99887 * 180.02562 * 16 15 13 18 18 O 1.31701 * 120.00277 * 359.97438 * 16 15 13 19 19 C 1.36399 * 120.29590 * 0.02562 * 15 13 11 20 20 H 0.97004 * 119.99927 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.14859 * 359.97438 * 10 9 7 22 22 H 1.08000 * 120.13843 * 179.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.3710 2.1074 -1.3947 5 1 1.4832 2.6199 0.8030 6 1 3.5753 1.4120 0.5919 7 6 2.0278 -1.2692 -0.0006 8 1 3.0888 -1.2803 0.2010 9 6 1.3515 -2.4689 -0.2628 10 6 0.1596 -2.4634 -1.0227 11 6 -0.4890 -3.6380 -1.2715 12 17 -1.9527 -3.6365 -2.2047 13 6 0.0192 -4.8372 -0.7808 14 17 -0.8174 -6.3234 -1.1050 15 6 1.1909 -4.8548 -0.0335 16 7 1.7143 -6.1382 0.4860 17 8 2.8241 -6.1582 1.1949 18 8 1.0698 -7.2601 0.2401 19 6 1.8574 -3.6939 0.2286 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2360 -1.5339 -1.4045 22 1 2.7674 -3.7105 0.8100 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307288332.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:39 Heat of formation + Delta-G solvation = 12.441341 kcal Electronic energy + Delta-G solvation = -14764.988029 eV Core-core repulsion = 11761.535313 eV Total energy + Delta-G solvation = -3003.452716 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80386 -39.22187 -37.50040 -37.30788 -35.79696 -35.45156 -32.48792 -32.07739 -27.65855 -27.28991 -23.33522 -23.15577 -20.42105 -19.15904 -18.50551 -17.48094 -17.15241 -17.07177 -16.38803 -15.84912 -14.88030 -14.76005 -13.80025 -13.52592 -13.26194 -13.08109 -12.86620 -12.77718 -12.53808 -12.38691 -12.19406 -12.03046 -11.80482 -11.78348 -11.32840 -11.06324 -10.19895 -9.79665 -9.11087 -6.76991 -1.62354 0.10658 0.22731 0.47517 1.08344 1.36228 1.40458 1.42522 1.56932 2.08892 2.19367 3.00557 3.86377 4.07558 4.14780 4.37166 4.69474 4.75110 4.79537 5.12120 5.37990 5.49456 5.79797 6.01372 6.22021 6.32396 7.79114 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.022558 B = 0.008030 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.944310 B = 3486.239986 C = 4657.846441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.036 3.964 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.250 1.250 7 C -0.418 4.418 8 H 0.113 0.887 9 C 0.083 3.917 10 C -0.140 4.140 11 C 0.015 3.985 12 Cl -0.056 7.056 13 C -0.167 4.167 14 Cl -0.045 7.045 15 C 0.059 3.941 16 N -0.012 5.012 17 O -0.217 6.217 18 O -0.170 6.170 19 C -0.172 4.172 20 H 0.316 0.684 21 H 0.151 0.849 22 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 4.482 -2.373 5.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.173 1.173 7 C -0.441 4.441 8 H 0.131 0.869 9 C 0.078 3.922 10 C -0.160 4.160 11 C -0.013 4.013 12 Cl -0.027 7.027 13 C -0.198 4.198 14 Cl -0.016 7.016 15 C -0.028 4.028 16 N 0.463 4.537 17 O -0.402 6.402 18 O -0.368 6.368 19 C -0.193 4.193 20 H 0.130 0.870 21 H 0.169 0.831 22 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.332 5.042 -2.656 5.852 hybrid contribution 0.010 -0.290 0.165 0.334 sum -1.321 4.752 -2.491 5.525 Atomic orbital electron populations 1.69008 1.10279 1.34008 1.24176 1.28533 0.95483 1.05171 0.89997 0.84838 0.79367 0.73545 0.80239 1.17841 1.18572 1.17289 1.21478 0.97545 0.89307 1.35802 0.86938 1.17582 0.91995 0.91837 0.90793 1.21483 0.97943 0.96178 1.00436 1.19995 0.90623 0.92320 0.98369 1.98307 1.34146 1.98850 1.71391 1.19678 0.98029 0.88448 1.13597 1.98307 1.77170 1.31731 1.94427 1.19580 0.97557 0.80799 1.04899 1.50729 1.00536 1.04728 0.97724 1.96180 1.09687 1.95758 1.38527 1.96237 1.57773 1.19773 1.63012 1.20982 1.03430 0.89707 1.05223 0.87043 0.83137 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -29.05 10.84 23.22 0.25 -28.80 14 2 C 0.04 1.33 5.41 87.21 0.47 1.80 14 3 Si 1.00 27.13 29.66 68.60 2.03 29.16 14 4 H -0.25 -6.72 7.11 99.48 0.71 -6.01 14 5 H -0.26 -6.79 7.11 99.48 0.71 -6.08 14 6 H -0.25 -6.70 7.11 99.48 0.71 -5.99 14 7 C -0.42 -16.99 9.31 24.91 0.23 -16.76 14 8 H 0.11 4.24 7.97 -2.91 -0.02 4.21 14 9 C 0.08 3.63 5.62 -21.27 -0.12 3.51 14 10 C -0.14 -6.05 8.48 22.62 0.19 -5.86 14 11 C 0.02 0.65 6.28 22.08 0.14 0.79 14 12 Cl -0.06 -2.03 27.92 -2.72 -0.08 -2.11 14 13 C -0.17 -7.38 6.36 22.68 0.14 -7.24 14 14 Cl -0.05 -1.83 24.72 -2.72 -0.07 -1.90 14 15 C 0.06 2.68 6.85 36.13 0.25 2.92 14 16 N -0.01 -0.53 4.98 -47.06 -0.23 -0.77 14 17 O -0.22 -9.95 19.11 3.51 0.07 -9.89 14 18 O -0.17 -7.77 16.56 3.51 0.06 -7.71 14 19 C -0.17 -7.61 9.30 22.61 0.21 -7.40 14 20 H 0.32 10.47 8.27 -92.71 -0.77 9.71 14 21 H 0.15 6.43 6.04 -2.91 -0.02 6.42 14 22 H 0.14 5.98 7.54 -2.91 -0.02 5.96 14 Total: -1.00 -46.88 242.54 4.84 -42.04 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.29 Total: 8.21 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 1.52 Total: -28.24 kcal Atomic # 7 Polarization: -29.58 SS G_CDS: 0.02 Total: -29.57 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.13 Total: -17.60 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: 2.03 Total: 29.16 kcal Atomic # 17 Polarization: -3.86 SS G_CDS: -0.14 Total: -4.01 kcal Total: -46.88 4.84 -42.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307288332.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.479 kcal (2) G-P(sol) polarization free energy of solvation -46.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds