Wall clock time and date at job start Mon Mar 30 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48497 * 109.47073 * 274.98537 * 3 2 1 5 5 H 1.48498 * 109.47053 * 34.98551 * 3 2 1 6 6 H 1.48496 * 109.47120 * 154.98738 * 3 2 1 7 7 C 1.40028 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99967 * 186.29239 * 7 2 1 9 9 C 1.41361 * 119.99911 * 6.28871 * 7 2 1 10 10 C 1.40644 * 119.80724 * 173.70133 * 9 7 2 11 11 C 1.38237 * 118.97976 * 180.27964 * 10 9 7 12 12 Cl 1.73600 * 120.72436 * 179.72671 * 11 10 9 13 13 C 1.39221 * 118.55209 * 359.47873 * 11 10 9 14 14 Br 1.89102 * 120.24017 * 180.26851 * 13 11 10 15 15 C 1.38828 * 119.52072 * 0.54484 * 13 11 10 16 16 N 1.31422 * 121.00754 * 359.69829 * 15 13 11 17 17 H 0.96995 * 120.00040 * 359.97438 * 1 2 3 18 18 H 1.07995 * 120.51124 * 359.97438 * 10 9 7 19 19 H 1.08000 * 119.49714 * 179.72776 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1020 9 6 1.3072 -2.4331 -0.1352 10 6 2.0208 -3.6377 -0.2687 11 6 1.3185 -4.8206 -0.4051 12 17 2.1534 -6.3326 -0.5801 13 6 -0.0728 -4.7735 -0.3939 14 35 -1.0810 -6.3638 -0.5693 15 6 -0.7148 -3.5501 -0.2587 16 7 -0.0292 -2.4357 -0.1353 17 1 -0.4850 0.8400 0.0004 18 1 3.1007 -3.6380 -0.2696 19 1 -1.7942 -3.5135 -0.2545 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307544817.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:24 Heat of formation + Delta-G solvation = 1.401128 kcal Electronic energy + Delta-G solvation = -10038.865947 eV Core-core repulsion = 7820.506806 eV Total energy + Delta-G solvation = -2218.359141 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 260.925 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.23966 -37.48489 -35.69511 -32.99742 -32.39214 -30.53176 -27.38948 -24.04038 -23.17585 -19.67481 -17.82215 -16.69493 -16.47699 -15.88405 -14.86885 -14.61049 -14.35970 -13.25482 -13.11216 -13.06802 -12.71437 -12.53024 -12.06441 -11.87120 -11.67115 -11.09531 -10.97444 -10.06177 -9.76674 -9.57288 -8.50483 -6.73194 0.51196 0.71271 0.92543 1.32934 1.43315 1.50696 1.58060 2.18286 2.63977 3.63844 3.97427 4.43379 4.54063 4.97718 5.08547 5.14819 5.18488 5.66169 6.05708 6.44454 6.68037 7.87695 8.25307 Molecular weight = 260.93amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.007053 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.551584 B = 3969.008279 C = 4574.419606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.021 3.979 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.429 4.429 8 H 0.104 0.896 9 C 0.229 3.771 10 C -0.270 4.270 11 C 0.056 3.944 12 Cl -0.066 7.066 13 C -0.291 4.291 14 Br -0.059 7.059 15 C 0.166 3.834 16 N -0.510 5.510 17 H 0.288 0.712 18 H 0.129 0.871 19 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -5.063 -0.738 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.203 4.203 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.459 4.459 8 H 0.122 0.878 9 C 0.106 3.894 10 C -0.294 4.294 11 C 0.023 3.977 12 Cl -0.037 7.037 13 C -0.376 4.376 14 Br 0.024 6.976 15 C -0.003 4.003 16 N -0.223 5.223 17 H 0.099 0.901 18 H 0.147 0.853 19 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.754 -4.817 -0.713 4.928 hybrid contribution 0.858 -0.134 -0.090 0.873 sum 0.104 -4.951 -0.803 5.017 Atomic orbital electron populations 1.70170 1.09138 1.30301 1.26035 1.27143 0.95807 1.04971 0.92428 0.84992 0.79194 0.74961 0.79493 1.18716 1.19062 1.17351 1.20244 0.95999 0.89930 1.39693 0.87832 1.19030 0.88520 0.92694 0.89120 1.21828 1.00221 0.91197 1.16173 1.20806 0.90948 0.86949 0.99024 1.98293 1.78171 1.31361 1.95844 1.22196 0.92355 0.93297 1.29723 1.96359 1.71576 1.31866 1.97782 1.22940 1.00080 0.86275 0.91030 1.68824 1.08070 1.26203 1.19208 0.90081 0.85327 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.56 11.49 21.84 0.25 -36.31 13 2 C 0.02 0.98 5.49 85.29 0.47 1.45 13 3 Si 0.99 34.29 29.56 68.60 2.03 36.32 13 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 13 5 H -0.27 -8.81 7.11 99.48 0.71 -8.10 13 6 H -0.25 -8.23 7.11 99.48 0.71 -7.52 13 7 C -0.43 -21.23 9.13 23.47 0.21 -21.01 13 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 13 9 C 0.23 11.88 6.55 40.23 0.26 12.14 13 10 C -0.27 -12.63 9.65 22.86 0.22 -12.40 13 11 C 0.06 2.47 6.36 22.51 0.14 2.62 13 12 Cl -0.07 -2.41 27.91 -2.72 -0.08 -2.48 13 13 C -0.29 -12.65 6.27 22.65 0.14 -12.51 13 14 Br -0.06 -2.09 32.67 -20.37 -0.67 -2.76 13 15 C 0.17 7.75 10.94 84.90 0.93 8.68 13 16 N -0.51 -26.85 7.89 -189.07 -1.49 -28.34 13 17 H 0.29 12.76 8.29 -92.71 -0.77 11.99 13 18 H 0.13 5.52 8.06 -2.91 -0.02 5.50 13 19 H 0.15 6.29 8.06 -2.91 -0.02 6.26 13 Total: -1.00 -53.67 217.50 3.71 -49.96 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.28 Total: 4.65 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 2.38 Total: -21.04 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -1.24 Total: -64.65 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.48 kcal Atomic # 35 Polarization: -2.09 SS G_CDS: -0.67 Total: -2.76 kcal Total: -53.67 3.71 -49.96 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307544817.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.365 kcal (2) G-P(sol) polarization free energy of solvation -53.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds