Wall clock time and date at job start Mon Mar 30 2020 07:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86794 * 120.00234 * 2 1 4 4 H 1.48508 * 109.47229 * 239.99997 * 3 2 1 5 5 H 1.48499 * 109.47138 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47273 * 119.99723 * 3 2 1 7 7 C 1.40175 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.39878 * 120.00267 * 0.02562 * 7 2 1 10 10 N 1.30941 * 125.27522 * 359.79655 * 9 7 2 11 11 C 1.33035 * 116.58749 * 179.78909 * 10 9 7 12 12 C 1.37540 * 113.50645 * 0.40524 * 11 10 9 13 13 S 1.71153 * 109.84472 * 359.78359 * 12 11 10 14 14 C 1.51399 * 108.23144 * 179.76974 * 12 11 10 15 15 C 1.50718 * 105.82772 * 359.97438 * 14 12 11 16 16 C 1.39008 * 107.28822 * 359.97438 * 15 14 12 17 17 C 1.39602 * 119.64554 * 180.02562 * 16 15 14 18 18 C 1.38010 * 119.80254 * 0.02562 * 17 16 15 19 19 C 1.38305 * 120.27537 * 0.02562 * 18 17 16 20 20 C 1.38081 * 132.47504 * 180.02562 * 15 14 12 21 21 F 1.35097 * 120.06609 * 359.92715 * 20 15 14 22 22 H 0.96999 * 120.00125 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.18040 * 240.90693 * 14 12 11 24 24 H 1.09001 * 110.17988 * 119.08595 * 14 12 11 25 25 H 1.07995 * 120.09813 * 179.97438 * 17 16 15 26 26 H 1.08003 * 119.86332 * 180.02562 * 18 17 16 27 27 H 1.07998 * 119.90902 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 3.0951 1.6963 -1.2126 5 1 1.2764 2.7464 -0.0006 6 1 3.0950 1.6963 1.2125 7 6 2.0081 -1.2140 0.0005 8 1 3.0881 -1.2141 0.0001 9 6 1.3087 -2.4254 0.0005 10 7 0.0049 -2.5458 0.0039 11 6 -0.4787 -3.7851 -0.0011 12 6 0.4969 -4.7546 -0.0002 13 16 2.0439 -4.0222 0.0011 14 6 -0.1807 -6.1085 -0.0005 15 6 -1.6613 -5.8271 -0.0009 16 6 -1.8194 -4.4460 -0.0004 17 6 -3.1033 -3.8979 -0.0002 18 6 -4.2043 -4.7300 0.0001 19 6 -4.0405 -6.1033 0.0006 20 6 -2.7675 -6.6536 -0.0008 21 9 -2.6099 -7.9953 -0.0017 22 1 -0.4850 0.8400 -0.0004 23 1 0.0952 -6.6672 0.8939 24 1 0.0964 -6.6675 -0.8942 25 1 -3.2345 -2.8260 0.0007 26 1 -5.1981 -4.3070 -0.0001 27 1 -4.9062 -6.7490 0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309215617.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:09 Heat of formation + Delta-G solvation = 3.218405 kcal Electronic energy + Delta-G solvation = -16110.118599 eV Core-core repulsion = 13258.948387 eV Total energy + Delta-G solvation = -2851.170212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.032 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.89082 -41.22091 -38.73524 -36.17428 -34.64419 -31.64585 -30.28045 -29.19243 -26.70110 -24.11266 -23.47212 -22.44210 -20.83693 -18.85345 -18.35138 -17.43266 -17.08840 -16.78845 -16.59761 -16.36031 -15.54859 -15.44255 -14.79479 -14.33497 -14.21701 -13.95688 -13.73182 -13.13043 -13.05207 -12.82493 -12.75709 -12.50667 -12.22142 -12.05058 -11.62788 -11.30075 -10.32899 -9.86553 -9.66647 -9.55120 -8.98125 -8.58656 -6.66782 -0.20544 0.16659 0.71144 1.06360 1.42521 1.53259 1.55407 1.62375 2.18796 2.25478 2.78667 3.09678 3.28580 3.42744 3.50360 3.96540 4.01499 4.28872 4.43231 4.52855 4.58896 4.75939 4.89717 4.98437 5.09225 5.27188 5.33258 5.48028 5.56364 5.89651 6.00920 6.24643 6.54949 7.84954 8.22937 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.005960 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.080960 B = 4696.850981 C = 5535.738288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.026 3.974 3 Si 1.007 2.993 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.411 4.411 8 H 0.113 0.887 9 C 0.203 3.797 10 N -0.556 5.556 11 C 0.101 3.899 12 C -0.417 4.417 13 S -0.017 6.017 14 C 0.038 3.962 15 C -0.140 4.140 16 C -0.013 4.013 17 C -0.116 4.116 18 C -0.079 4.079 19 C -0.140 4.140 20 C 0.107 3.893 21 F -0.139 7.139 22 H 0.292 0.708 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.177 0.823 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -4.645 -0.008 7.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.200 4.200 3 Si 0.824 3.176 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.454 4.454 8 H 0.131 0.869 9 C -0.051 4.051 10 N -0.276 5.276 11 C -0.036 4.036 12 C -0.541 4.541 13 S 0.243 5.757 14 C -0.001 4.001 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.135 4.135 18 C -0.096 4.096 19 C -0.158 4.158 20 C 0.088 3.912 21 F -0.118 7.118 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.140 0.860 26 H 0.194 0.806 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.011 -4.548 -0.001 6.767 hybrid contribution -0.288 0.247 -0.005 0.379 sum -5.298 -4.301 -0.006 6.825 Atomic orbital electron populations 1.70103 1.09501 1.30837 1.26475 1.27203 0.95844 1.04694 0.92272 0.84892 0.78405 0.73576 0.80721 1.17552 1.18975 1.17548 1.19512 0.95732 0.88413 1.41717 0.86947 1.24417 0.89102 0.94650 0.96882 1.66998 1.10309 1.19090 1.31169 1.20959 0.93999 0.88377 1.00248 1.25584 0.96700 1.01693 1.30157 1.82390 1.07919 1.05807 1.79576 1.18500 0.87683 0.91672 1.02263 1.20279 0.95763 0.93576 1.04743 1.18916 0.90897 0.92049 0.99680 1.21257 0.90911 1.01043 1.00278 1.21245 0.99334 0.91909 0.97147 1.21488 0.95184 0.96526 1.02631 1.17021 0.93045 0.76206 1.04908 1.91462 1.96591 1.29594 1.94141 0.89753 0.89142 0.89140 0.86019 0.80579 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.05 11.86 21.87 0.26 -38.79 15 2 C 0.03 1.26 5.50 85.33 0.47 1.73 15 3 Si 1.01 34.94 29.56 68.60 2.03 36.97 15 4 H -0.25 -8.33 7.11 99.48 0.71 -7.62 15 5 H -0.27 -8.77 7.11 99.48 0.71 -8.06 15 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 15 7 C -0.41 -21.27 9.38 23.14 0.22 -21.05 15 8 H 0.11 5.22 7.85 -2.91 -0.02 5.20 15 9 C 0.20 11.33 7.04 85.22 0.60 11.93 15 10 N -0.56 -32.58 8.74 -181.96 -1.59 -34.17 15 11 C 0.10 5.39 7.73 41.83 0.32 5.71 15 12 C -0.42 -20.66 7.41 25.74 0.19 -20.47 15 13 S -0.02 -0.84 23.14 -56.49 -1.31 -2.15 15 14 C 0.04 1.52 6.74 29.33 0.20 1.72 15 15 C -0.14 -5.46 6.29 -19.71 -0.12 -5.58 15 16 C -0.01 -0.57 6.20 -19.73 -0.12 -0.69 15 17 C -0.12 -4.24 10.11 22.54 0.23 -4.01 15 18 C -0.08 -2.04 10.02 22.23 0.22 -1.81 15 19 C -0.14 -3.45 10.03 22.39 0.22 -3.22 15 20 C 0.11 3.39 7.30 22.34 0.16 3.55 15 21 F -0.14 -4.16 17.27 44.97 0.78 -3.39 15 22 H 0.29 13.54 8.29 -92.71 -0.77 12.77 15 23 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 25 H 0.12 4.63 8.06 -2.91 -0.02 4.61 15 26 H 0.18 2.97 8.06 -2.91 -0.02 2.95 15 27 H 0.18 2.87 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -65.97 262.23 3.98 -61.99 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.22 Total: 11.75 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 2.59 Total: -32.20 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.33 Total: -72.96 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.31 Total: -2.15 kcal Total: -65.97 3.98 -61.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309215617.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.208 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds