Wall clock time and date at job start Mon Mar 30 2020 07:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29506 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48499 * 109.47170 * 274.99564 * 3 2 1 5 5 H 1.48508 * 109.46750 * 34.99194 * 3 2 1 6 6 H 1.48492 * 109.47059 * 154.98974 * 3 2 1 7 7 C 1.46536 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00217 * 192.35411 * 7 2 1 9 9 C 1.40352 * 120.00204 * 12.35076 * 7 2 1 10 10 C 1.41296 * 120.28626 * 25.18617 * 9 7 2 11 11 C 1.36484 * 119.68629 * 179.97438 * 10 9 7 12 12 N 1.48011 * 119.84612 * 180.02562 * 11 10 9 13 13 O 1.31705 * 119.99900 * 179.97438 * 12 11 10 14 14 O 1.31695 * 120.00480 * 359.97438 * 12 11 10 15 15 C 1.38819 * 120.30023 * 0.02562 * 11 10 9 16 16 C 1.38772 * 120.60097 * 359.97438 * 15 11 10 17 17 C 1.50694 * 119.85169 * 179.97438 * 16 15 11 18 18 F 1.39901 * 109.47114 * 0.02562 * 17 16 15 19 19 F 1.39900 * 109.47393 * 120.00168 * 17 16 15 20 20 F 1.39902 * 109.47475 * 240.00461 * 17 16 15 21 21 C 1.36518 * 120.29903 * 0.02562 * 16 15 11 22 22 H 0.97002 * 119.99966 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.15319 * 359.97438 * 10 9 7 24 24 H 1.07999 * 119.70008 * 179.71937 * 15 11 10 25 25 H 1.08002 * 120.15838 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 2.3710 2.1074 -1.3947 5 1 1.4832 2.6199 0.8029 6 1 3.5753 1.4120 0.5919 7 6 2.0277 -1.2690 -0.0006 8 1 3.0890 -1.2800 0.1995 9 6 1.3503 -2.4704 -0.2611 10 6 0.1575 -2.4661 -1.0184 11 6 -0.4910 -3.6415 -1.2648 12 7 -1.7405 -3.6411 -2.0582 13 8 -2.3684 -4.7737 -2.2983 14 8 -2.2245 -2.5084 -2.5241 15 6 0.0161 -4.8372 -0.7748 16 6 1.1867 -4.8556 -0.0297 17 6 1.7217 -6.1632 0.4946 18 9 0.8735 -7.2046 0.1031 19 9 3.0018 -6.3849 -0.0243 20 9 1.7866 -6.1142 1.8912 21 6 1.8552 -3.6943 0.2315 22 1 -0.4850 0.8401 0.0004 23 1 -0.2392 -1.5371 -1.4004 24 1 -0.5073 -5.7611 -0.9718 25 1 2.7662 -3.7112 0.8113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309239593.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:50 Heat of formation + Delta-G solvation = -122.616709 kcal Electronic energy + Delta-G solvation = -19166.739083 eV Core-core repulsion = 15313.129850 eV Total energy + Delta-G solvation = -3853.609233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.75072 -47.26238 -47.21589 -39.08505 -37.41031 -34.44774 -33.63237 -31.48353 -31.00815 -26.07109 -25.74225 -25.36216 -21.42448 -21.08313 -18.95270 -18.08069 -18.00753 -17.46008 -16.77842 -16.19867 -15.57183 -15.34166 -15.16525 -14.32570 -14.13382 -13.79936 -13.67061 -13.50180 -13.39203 -13.33251 -12.44447 -12.22333 -11.82601 -11.59904 -11.46611 -11.04430 -10.91477 -10.60647 -10.51482 -10.26850 -9.99075 -9.90511 -8.81368 -8.42330 -7.53574 -5.06134 0.21210 1.85178 2.01603 2.18186 2.70636 2.73270 2.77789 3.13989 3.41870 3.75659 4.21987 4.53685 4.59443 4.95870 5.70937 5.83462 5.88915 6.01879 6.12700 6.34637 6.56686 6.81239 6.85754 7.12259 7.21312 7.63072 7.69877 7.91063 8.04368 9.35052 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.008236 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.052474 B = 3398.841940 C = 4822.126554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.065 3.935 3 Si 0.933 3.067 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.090 4.090 11 C 0.038 3.962 12 N -0.005 5.005 13 O -0.205 6.205 14 O -0.189 6.189 15 C -0.194 4.194 16 C -0.125 4.125 17 C 0.511 3.489 18 F -0.181 7.181 19 F -0.181 7.181 20 F -0.181 7.181 21 C -0.163 4.163 22 H 0.304 0.696 23 H 0.158 0.842 24 H 0.133 0.867 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -1.338 1.764 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.164 4.164 3 Si 0.755 3.245 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.448 4.448 8 H 0.120 0.880 9 C 0.092 3.908 10 C -0.111 4.111 11 C -0.048 4.048 12 N 0.470 4.530 13 O -0.396 6.396 14 O -0.383 6.383 15 C -0.215 4.215 16 C -0.127 4.127 17 C 0.456 3.544 18 F -0.163 7.163 19 F -0.163 7.163 20 F -0.162 7.162 21 C -0.183 4.183 22 H 0.117 0.883 23 H 0.175 0.825 24 H 0.151 0.849 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.816 -1.242 2.131 5.410 hybrid contribution -0.158 0.392 -0.093 0.433 sum 4.658 -0.850 2.038 5.155 Atomic orbital electron populations 1.68989 1.08983 1.32336 1.25694 1.27703 0.94834 1.02876 0.91016 0.85859 0.80593 0.77982 0.80101 1.18356 1.19362 1.17578 1.20994 0.96753 0.88712 1.38384 0.88020 1.17306 0.90635 0.92632 0.90180 1.21580 0.96347 0.96260 0.96878 1.19800 0.85751 0.97169 1.02089 1.50751 1.02666 1.01761 0.97793 1.96180 1.61916 1.16176 1.65287 1.96211 1.71167 1.15949 1.54954 1.19726 0.98520 0.96632 1.06625 1.18967 0.98193 0.91480 1.04046 1.18423 0.75272 0.85331 0.75329 1.93136 1.71003 1.61362 1.90780 1.93173 1.40842 1.95537 1.86728 1.93179 1.96202 1.96720 1.30117 1.20794 1.02230 0.91355 1.03939 0.88338 0.82471 0.84881 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -15.92 10.84 55.98 0.61 -15.31 15 2 C 0.06 1.31 5.41 -15.19 -0.08 1.23 15 3 Si 0.93 15.01 29.66 -169.99 -5.04 9.97 15 4 H -0.26 -4.18 7.11 56.52 0.40 -3.77 15 5 H -0.27 -4.27 7.11 56.52 0.40 -3.87 15 6 H -0.25 -3.99 7.11 56.52 0.40 -3.59 15 7 C -0.42 -9.07 9.32 -35.44 -0.33 -9.40 15 8 H 0.10 2.01 7.97 -52.48 -0.42 1.59 15 9 C 0.10 2.16 5.62 -106.79 -0.60 1.56 15 10 C -0.09 -2.10 8.25 -39.05 -0.32 -2.42 15 11 C 0.04 0.87 6.84 -80.37 -0.55 0.32 15 12 N -0.01 -0.13 4.98 33.76 0.17 0.04 15 13 O -0.21 -4.80 19.14 -31.57 -0.60 -5.41 15 14 O -0.19 -4.55 19.12 -31.57 -0.60 -5.16 15 15 C -0.19 -4.18 8.98 -39.17 -0.35 -4.53 15 16 C -0.12 -2.52 5.34 -105.05 -0.56 -3.08 15 17 C 0.51 9.16 3.31 36.00 0.12 9.28 15 18 F -0.18 -3.20 15.95 2.25 0.04 -3.17 15 19 F -0.18 -3.13 17.23 2.25 0.04 -3.09 15 20 F -0.18 -3.17 17.23 2.25 0.04 -3.13 15 21 C -0.16 -3.37 9.29 -39.06 -0.36 -3.74 15 22 H 0.30 5.80 8.27 -40.82 -0.34 5.47 15 23 H 0.16 3.81 5.53 -52.49 -0.29 3.52 15 24 H 0.13 2.76 6.63 -52.49 -0.35 2.41 15 25 H 0.12 2.26 8.06 -52.49 -0.42 1.83 15 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -23.44 254.27 -5.18 -28.62 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -0.61 Total: 3.58 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.04 Total: -10.77 kcal Atomic # 7 Polarization: -16.04 SS G_CDS: 0.77 Total: -15.27 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.21 Total: -10.56 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 0.11 Total: -9.39 kcal Atomic # 14 Polarization: 15.01 SS G_CDS: -5.04 Total: 9.97 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -23.44 -5.18 -28.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309239593.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.999 kcal (2) G-P(sol) polarization free energy of solvation -23.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds