Wall clock time and date at job start Mon Mar 30 2020 07:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29498 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48497 * 109.47357 * 239.99653 * 3 2 1 5 5 H 1.48505 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47303 * 119.99495 * 3 2 1 7 7 C 1.46544 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00056 * 191.64225 * 7 2 1 9 9 C 1.40341 * 119.99888 * 11.64380 * 7 2 1 10 10 C 1.41294 * 120.29232 * 26.19751 * 9 7 2 11 11 C 1.36479 * 119.69193 * 180.02562 * 10 9 7 12 12 N 1.48013 * 119.84941 * 179.97438 * 11 10 9 13 13 O 1.31702 * 120.00050 * 180.02562 * 12 11 10 14 14 O 1.31702 * 120.00115 * 0.02562 * 12 11 10 15 15 C 1.38821 * 120.30087 * 359.97438 * 11 10 9 16 16 C 1.38767 * 120.59727 * 0.28236 * 15 11 10 17 17 C 1.36524 * 120.29915 * 359.43236 * 16 15 11 18 18 C 1.50697 * 120.15491 * 180.25429 * 17 16 15 19 19 F 1.39902 * 109.47412 * 0.30717 * 18 17 16 20 20 F 1.39906 * 109.47020 * 120.30739 * 18 17 16 21 21 F 1.39904 * 109.47490 * 240.30581 * 18 17 16 22 22 H 0.96998 * 120.00162 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.15092 * 0.03869 * 10 9 7 24 24 H 1.07999 * 119.70265 * 179.97438 * 15 11 10 25 25 H 1.08000 * 119.84968 * 179.72288 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 3.0828 1.6965 -1.2124 5 1 1.2639 2.7465 -0.0006 6 1 3.0826 1.6966 1.2126 7 6 2.0277 -1.2691 0.0006 8 1 3.0911 -1.2786 0.1893 9 6 1.3477 -2.4721 -0.2442 10 6 0.1582 -2.4760 -1.0067 11 6 -0.4934 -3.6529 -1.2368 12 7 -1.7401 -3.6609 -2.0347 13 8 -2.3716 -4.7948 -2.2581 14 8 -2.2178 -2.5341 -2.5212 15 6 0.0076 -4.8424 -0.7260 16 6 1.1719 -4.8521 0.0290 17 6 1.8467 -3.6898 0.2693 18 6 3.1139 -3.7048 1.0847 19 9 3.4003 -5.0167 1.4774 20 9 4.1703 -3.2076 0.3140 21 9 2.9476 -2.9041 2.2198 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2333 -1.5519 -1.4058 24 1 -0.5161 -5.7681 -0.9136 25 1 1.5485 -5.7839 0.4243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309262752.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:20 Heat of formation + Delta-G solvation = -122.704710 kcal Electronic energy + Delta-G solvation = -19506.681863 eV Core-core repulsion = 15653.068814 eV Total energy + Delta-G solvation = -3853.613049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.36695 -46.94340 -46.74302 -39.04131 -37.39095 -34.42816 -33.63839 -31.65557 -30.54820 -26.90750 -25.99734 -23.82365 -21.92530 -20.72135 -18.65068 -17.81114 -17.66150 -17.36870 -17.17849 -16.80124 -15.50821 -15.16085 -14.20686 -14.05204 -13.74630 -13.57718 -13.38068 -13.31265 -13.07158 -12.99592 -12.81438 -12.32374 -11.82384 -11.62797 -11.34039 -11.01708 -10.73198 -10.61408 -10.47166 -10.24896 -9.99579 -9.92009 -8.78415 -8.34929 -7.62208 -5.18314 0.16811 2.03348 2.07959 2.18621 2.69167 2.73605 2.77799 3.39463 3.57164 3.77738 4.56419 4.75351 4.94131 5.34936 5.50830 5.76669 6.04578 6.07751 6.19080 6.34930 6.64195 6.77720 6.94883 7.09827 7.23968 7.60138 7.66959 7.81617 7.95321 9.25162 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.011068 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.927677 B = 2529.173299 C = 4231.163393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.066 3.934 3 Si 0.933 3.067 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.408 4.408 8 H 0.107 0.893 9 C 0.124 3.876 10 C -0.078 4.078 11 C 0.047 3.953 12 N -0.007 5.007 13 O -0.205 6.205 14 O -0.193 6.193 15 C -0.241 4.241 16 C -0.012 4.012 17 C -0.306 4.306 18 C 0.525 3.475 19 F -0.196 7.196 20 F -0.188 7.188 21 F -0.181 7.181 22 H 0.307 0.693 23 H 0.158 0.842 24 H 0.126 0.874 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 0.226 1.925 5.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.165 4.165 3 Si 0.754 3.246 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.432 4.432 8 H 0.125 0.875 9 C 0.120 3.880 10 C -0.099 4.099 11 C -0.039 4.039 12 N 0.468 4.532 13 O -0.395 6.395 14 O -0.386 6.386 15 C -0.261 4.261 16 C -0.031 4.031 17 C -0.309 4.309 18 C 0.471 3.529 19 F -0.177 7.177 20 F -0.169 7.169 21 F -0.162 7.162 22 H 0.120 0.880 23 H 0.175 0.825 24 H 0.144 0.856 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.121 0.362 2.295 5.624 hybrid contribution -0.043 0.603 -0.067 0.608 sum 5.079 0.965 2.228 5.629 Atomic orbital electron populations 1.68979 1.09028 1.32836 1.24089 1.27750 0.94880 1.03023 0.90818 0.85905 0.80229 0.77152 0.81308 1.17548 1.19221 1.17668 1.21304 0.97042 0.88961 1.35871 0.87529 1.16914 0.90221 0.91644 0.89214 1.21474 0.95308 0.96298 0.96815 1.20158 0.85263 0.97847 1.00609 1.50834 1.02850 1.01670 0.97895 1.96168 1.61588 1.15872 1.65919 1.96210 1.71603 1.16660 1.54119 1.19967 1.00840 0.95710 1.09614 1.19976 0.92456 0.96557 0.94091 1.19507 1.00830 0.96827 1.13761 1.18093 0.84554 0.72095 0.78111 1.93062 1.94619 1.38185 1.91848 1.93124 1.60626 1.87659 1.75500 1.93161 1.95628 1.74212 1.53223 0.87975 0.82468 0.85580 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.63 10.87 55.99 0.61 -15.02 15 2 C 0.07 1.36 5.42 -15.19 -0.08 1.27 15 3 Si 0.93 15.33 29.66 -169.99 -5.04 10.29 15 4 H -0.25 -4.11 7.11 56.52 0.40 -3.71 15 5 H -0.27 -4.24 7.11 56.52 0.40 -3.83 15 6 H -0.25 -4.15 7.11 56.52 0.40 -3.75 15 7 C -0.41 -9.03 8.10 -35.44 -0.29 -9.32 15 8 H 0.11 2.28 6.14 -52.49 -0.32 1.96 15 9 C 0.12 2.86 5.59 -106.80 -0.60 2.26 15 10 C -0.08 -1.83 8.24 -39.06 -0.32 -2.15 15 11 C 0.05 1.08 6.84 -80.37 -0.55 0.53 15 12 N -0.01 -0.17 4.98 33.76 0.17 -0.01 15 13 O -0.21 -4.73 19.14 -31.57 -0.60 -5.34 15 14 O -0.19 -4.63 19.12 -31.57 -0.60 -5.23 15 15 C -0.24 -5.06 9.59 -39.17 -0.38 -5.44 15 16 C -0.01 -0.23 9.38 -40.00 -0.38 -0.61 15 17 C -0.31 -6.55 5.40 -104.09 -0.56 -7.11 15 18 C 0.53 10.41 2.82 36.00 0.10 10.51 15 19 F -0.20 -3.55 15.96 2.25 0.04 -3.51 15 20 F -0.19 -3.68 15.70 2.25 0.04 -3.65 15 21 F -0.18 -3.69 16.52 2.25 0.04 -3.65 15 22 H 0.31 5.82 8.27 -40.82 -0.34 5.49 15 23 H 0.16 3.78 5.58 -52.48 -0.29 3.49 15 24 H 0.13 2.46 7.56 -52.49 -0.40 2.06 15 25 H 0.12 2.11 7.12 -52.49 -0.37 1.74 15 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -23.80 249.33 -5.18 -28.98 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -0.52 Total: 3.44 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.05 Total: -10.05 kcal Atomic # 7 Polarization: -15.81 SS G_CDS: 0.78 Total: -15.03 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.21 Total: -10.57 kcal Atomic # 9 Polarization: -10.92 SS G_CDS: 0.11 Total: -10.81 kcal Atomic # 14 Polarization: 15.33 SS G_CDS: -5.04 Total: 10.29 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -23.80 -5.18 -28.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309262752.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.727 kcal (2) G-P(sol) polarization free energy of solvation -23.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds