Wall clock time and date at job start Mon Mar 30 2020 07:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29498 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48497 * 109.47357 * 239.99653 * 3 2 1 5 5 H 1.48505 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47303 * 119.99495 * 3 2 1 7 7 C 1.46544 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00056 * 191.64225 * 7 2 1 9 9 C 1.40341 * 119.99888 * 11.64380 * 7 2 1 10 10 C 1.41294 * 120.29232 * 26.19751 * 9 7 2 11 11 C 1.36479 * 119.69193 * 180.02562 * 10 9 7 12 12 N 1.48013 * 119.84941 * 179.97438 * 11 10 9 13 13 O 1.31702 * 120.00050 * 180.02562 * 12 11 10 14 14 O 1.31702 * 120.00115 * 0.02562 * 12 11 10 15 15 C 1.38821 * 120.30087 * 359.97438 * 11 10 9 16 16 C 1.38767 * 120.59727 * 0.28236 * 15 11 10 17 17 C 1.36524 * 120.29915 * 359.43236 * 16 15 11 18 18 C 1.50697 * 120.15491 * 180.25429 * 17 16 15 19 19 F 1.39902 * 109.47412 * 0.30717 * 18 17 16 20 20 F 1.39906 * 109.47020 * 120.30739 * 18 17 16 21 21 F 1.39904 * 109.47490 * 240.30581 * 18 17 16 22 22 H 0.96998 * 120.00162 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.15092 * 0.03869 * 10 9 7 24 24 H 1.07999 * 119.70265 * 179.97438 * 15 11 10 25 25 H 1.08000 * 119.84968 * 179.72288 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 3.0828 1.6965 -1.2124 5 1 1.2639 2.7465 -0.0006 6 1 3.0826 1.6966 1.2126 7 6 2.0277 -1.2691 0.0006 8 1 3.0911 -1.2786 0.1893 9 6 1.3477 -2.4721 -0.2442 10 6 0.1582 -2.4760 -1.0067 11 6 -0.4934 -3.6529 -1.2368 12 7 -1.7401 -3.6609 -2.0347 13 8 -2.3716 -4.7948 -2.2581 14 8 -2.2178 -2.5341 -2.5212 15 6 0.0076 -4.8424 -0.7260 16 6 1.1719 -4.8521 0.0290 17 6 1.8467 -3.6898 0.2693 18 6 3.1139 -3.7048 1.0847 19 9 3.4003 -5.0167 1.4774 20 9 4.1703 -3.2076 0.3140 21 9 2.9476 -2.9041 2.2198 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2333 -1.5519 -1.4058 24 1 -0.5161 -5.7681 -0.9136 25 1 1.5485 -5.7839 0.4243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309262752.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:20 Heat of formation + Delta-G solvation = -133.037076 kcal Electronic energy + Delta-G solvation = -19507.129908 eV Core-core repulsion = 15653.068814 eV Total energy + Delta-G solvation = -3854.061094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.93219 -48.47654 -48.33712 -40.79569 -39.16700 -36.04669 -35.49413 -33.37106 -32.21338 -28.61677 -27.71576 -25.49756 -23.59055 -22.42545 -20.33612 -19.47077 -19.23825 -19.03328 -18.89915 -18.52375 -17.05212 -16.96913 -15.83726 -15.69774 -15.31488 -15.17231 -14.87298 -14.86587 -14.65537 -14.57122 -14.36421 -13.95961 -13.43587 -13.08987 -12.92000 -12.60095 -12.40557 -12.35703 -12.04859 -11.96114 -11.87343 -11.42279 -10.49889 -10.03217 -9.17785 -6.87345 -1.66443 0.23464 0.34853 0.54547 1.32668 1.42683 1.48944 1.97665 2.03542 2.20197 2.89344 3.12942 3.36580 3.75147 3.88749 4.05077 4.31729 4.41338 4.58558 4.68661 4.95539 5.05756 5.24646 5.41821 5.58471 5.82558 5.94964 6.15225 6.27211 7.72693 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.014482 B = 0.011068 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.927677 B = 2529.173299 C = 4231.163393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.034 3.966 3 Si 0.997 3.003 4 H -0.249 1.249 5 H -0.257 1.257 6 H -0.249 1.249 7 C -0.426 4.426 8 H 0.110 0.890 9 C 0.103 3.897 10 C -0.099 4.099 11 C 0.036 3.964 12 N -0.009 5.009 13 O -0.185 6.185 14 O -0.226 6.226 15 C -0.243 4.243 16 C -0.003 4.003 17 C -0.315 4.315 18 C 0.531 3.469 19 F -0.182 7.182 20 F -0.186 7.186 21 F -0.185 7.185 22 H 0.316 0.684 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -0.035 2.490 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.194 4.194 3 Si 0.814 3.186 4 H -0.173 1.173 5 H -0.181 1.181 6 H -0.173 1.173 7 C -0.450 4.450 8 H 0.128 0.872 9 C 0.099 3.901 10 C -0.120 4.120 11 C -0.050 4.050 12 N 0.465 4.535 13 O -0.382 6.382 14 O -0.411 6.411 15 C -0.263 4.263 16 C -0.022 4.022 17 C -0.318 4.318 18 C 0.478 3.522 19 F -0.164 7.164 20 F -0.168 7.168 21 F -0.166 7.166 22 H 0.130 0.870 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.079 0.164 2.846 6.714 hybrid contribution -0.347 0.551 -0.208 0.683 sum 5.732 0.715 2.639 6.350 Atomic orbital electron populations 1.68998 1.10372 1.34258 1.24180 1.28596 0.95445 1.05548 0.89816 0.84995 0.79069 0.73290 0.81288 1.17267 1.18071 1.17286 1.21586 0.97374 0.89798 1.36222 0.87188 1.17181 0.90395 0.92808 0.89716 1.21384 0.96320 0.96089 0.98198 1.20453 0.85027 0.98636 1.00881 1.50981 1.03098 1.01553 0.97894 1.96134 1.61330 1.15810 1.64917 1.96213 1.72339 1.16856 1.55664 1.20256 1.01214 0.95547 1.09301 1.20324 0.91533 0.97419 0.92908 1.19783 1.01535 0.96879 1.13610 1.17849 0.84042 0.72561 0.77780 1.93086 1.94479 1.37134 1.91682 1.93126 1.60414 1.87726 1.75508 1.93154 1.95648 1.74458 1.53354 0.86997 0.83886 0.83789 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.74 10.87 23.21 0.25 -32.49 15 2 C 0.03 1.38 5.42 87.20 0.47 1.85 15 3 Si 1.00 30.38 29.66 68.60 2.03 32.41 15 4 H -0.25 -7.44 7.11 99.48 0.71 -6.74 15 5 H -0.26 -7.32 7.11 99.48 0.71 -6.61 15 6 H -0.25 -7.42 7.11 99.48 0.71 -6.72 15 7 C -0.43 -18.80 8.10 24.95 0.20 -18.60 15 8 H 0.11 4.65 6.14 -2.91 -0.02 4.63 15 9 C 0.10 4.74 5.59 -21.27 -0.12 4.62 15 10 C -0.10 -4.70 8.24 22.61 0.19 -4.52 15 11 C 0.04 1.64 6.84 36.10 0.25 1.89 15 12 N -0.01 -0.41 4.98 -47.11 -0.23 -0.65 15 13 O -0.18 -8.30 19.14 3.51 0.07 -8.23 15 14 O -0.23 -11.08 19.12 3.51 0.07 -11.01 15 15 C -0.24 -9.80 9.59 22.54 0.22 -9.58 15 16 C 0.00 -0.12 9.38 22.00 0.21 0.09 15 17 C -0.31 -13.06 5.40 -19.52 -0.11 -13.16 15 18 C 0.53 20.10 2.82 71.24 0.20 20.30 15 19 F -0.18 -6.12 15.96 44.97 0.72 -5.40 15 20 F -0.19 -7.01 15.70 44.97 0.71 -6.31 15 21 F -0.18 -7.26 16.52 44.97 0.74 -6.52 15 22 H 0.32 12.04 8.27 -92.71 -0.77 11.28 15 23 H 0.14 7.13 5.58 -2.91 -0.02 7.11 15 24 H 0.14 5.24 7.56 -2.91 -0.02 5.21 15 25 H 0.16 4.78 7.12 -2.91 -0.02 4.76 15 Total: -1.00 -49.50 249.33 7.14 -42.36 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.28 Total: 12.93 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 1.51 Total: -17.11 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.02 Total: -33.13 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.13 Total: -19.24 kcal Atomic # 9 Polarization: -20.39 SS G_CDS: 2.17 Total: -18.22 kcal Atomic # 14 Polarization: 30.38 SS G_CDS: 2.03 Total: 32.41 kcal Total: -49.50 7.14 -42.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309262752.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.673 kcal (2) G-P(sol) polarization free energy of solvation -49.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds