Wall clock time and date at job start Mon Mar 30 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47449 * 110.99839 * 2 1 4 4 C 1.54314 * 107.23253 * 123.25649 * 3 2 1 5 5 C 1.55264 * 103.08561 * 22.20633 * 4 3 2 6 6 C 1.47848 * 111.00422 * 120.84201 * 2 1 3 7 7 H 1.09000 * 110.37226 * 332.58015 * 6 2 1 8 8 C 1.52994 * 110.37176 * 94.80624 * 6 2 1 9 9 N 1.46499 * 109.47689 * 296.79841 * 8 6 2 10 10 C 1.39683 * 120.00142 * 173.08606 * 9 8 6 11 11 C 1.39329 * 119.95152 * 359.97438 * 10 9 8 12 12 C 1.38477 * 120.42196 * 179.97438 * 11 10 9 13 13 C 1.37693 * 120.32888 * 0.25421 * 12 11 10 14 14 C 1.40758 * 119.88741 * 359.50012 * 13 12 11 15 15 C 1.41403 * 120.20401 * 180.24864 * 14 13 12 16 16 H 1.08002 * 120.00213 * 209.96344 * 15 14 13 17 17 C 1.39934 * 120.00214 * 29.97096 * 15 14 13 18 18 N 1.30835 * 119.99860 * 16.74644 * 17 15 14 19 19 Si 1.86793 * 120.00049 * 196.74609 * 17 15 14 20 20 H 1.48497 * 109.47447 * 60.00302 * 19 17 15 21 21 H 1.48507 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47224 * 299.99664 * 19 17 15 23 23 C 1.38278 * 119.94922 * 179.97438 * 10 9 8 24 24 H 1.08997 * 109.47352 * 290.88584 * 1 2 3 25 25 H 1.08997 * 109.47677 * 50.88890 * 1 2 3 26 26 H 1.09003 * 109.46927 * 170.89395 * 1 2 3 27 27 H 1.09000 * 109.88723 * 242.66955 * 3 2 1 28 28 H 1.09005 * 109.88372 * 3.68718 * 3 2 1 29 29 H 1.09003 * 110.70218 * 140.66643 * 4 3 2 30 30 H 1.08999 * 110.70844 * 263.89879 * 4 3 2 31 31 H 1.09004 * 111.08644 * 206.37828 * 5 4 3 32 32 H 1.09004 * 110.94036 * 82.53052 * 5 4 3 33 33 H 1.09008 * 109.46995 * 176.79487 * 8 6 2 34 34 H 1.09007 * 109.46906 * 56.79947 * 8 6 2 35 35 H 0.97006 * 119.99366 * 353.08288 * 9 8 6 36 36 H 1.07997 * 119.79078 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.84062 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.05467 * 179.71873 * 13 12 11 39 39 H 0.97000 * 119.99904 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.16563 * 0.04653 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9157 1.5137 1.2325 5 6 3.3043 0.0437 1.5467 6 6 1.9989 -0.7076 1.1850 7 1 1.2882 -0.6519 2.0096 8 6 2.3020 -2.1675 0.8422 9 7 1.0596 -2.8508 0.4737 10 6 1.1008 -4.1569 -0.0199 11 6 2.3240 -4.8087 -0.1617 12 6 2.3760 -6.1037 -0.6495 13 6 1.2189 -6.7599 -1.0048 14 6 -0.0247 -6.1160 -0.8622 15 6 -1.2176 -6.7855 -1.2201 16 1 -2.0670 -6.2219 -1.5770 17 6 -1.2979 -8.1783 -1.1116 18 7 -0.4231 -8.8297 -0.3889 19 14 -2.6539 -9.1076 -1.9987 20 1 -2.5446 -8.8673 -3.4600 21 1 -2.5195 -10.5609 -1.7241 22 1 -3.9760 -8.6336 -1.5165 23 6 -0.0726 -4.8010 -0.3669 24 1 -0.3634 0.3664 0.9601 25 1 -0.3634 0.6482 -0.7973 26 1 -0.3633 -1.0147 -0.1626 27 1 2.5696 1.5541 -0.9106 28 1 1.1752 2.0893 0.0659 29 1 3.7999 2.1035 0.9905 30 1 2.3743 1.9547 2.0694 31 1 3.5470 -0.0808 2.6020 32 1 4.1309 -0.2840 0.9162 33 1 2.7443 -2.6599 1.7084 34 1 3.0002 -2.2070 0.0061 35 1 0.2084 -2.3961 0.5724 36 1 3.2373 -4.3011 0.1112 37 1 3.3294 -6.5999 -0.7560 38 1 1.2650 -7.7681 -1.3890 39 1 -0.4789 -9.7951 -0.3135 40 1 -1.0213 -4.2965 -0.2581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313407010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:05 Heat of formation + Delta-G solvation = 24.260088 kcal Electronic energy + Delta-G solvation = -19059.925337 eV Core-core repulsion = 16259.759845 eV Total energy + Delta-G solvation = -2800.165491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.39903 -37.57371 -34.81952 -33.00981 -32.22140 -30.27818 -29.63470 -27.22850 -25.88338 -25.09279 -23.82457 -21.35991 -20.90582 -20.17067 -19.68775 -17.21167 -16.53496 -15.79791 -15.31091 -14.78117 -14.59103 -14.26279 -14.20372 -13.71550 -13.17927 -12.92294 -12.85628 -12.59111 -12.36667 -12.07186 -11.60356 -11.44171 -11.37260 -11.26133 -11.14559 -10.97230 -10.91839 -10.76292 -10.46670 -10.34929 -9.66897 -9.23058 -9.11969 -8.63603 -8.35965 -7.26512 -6.62153 -6.09814 -4.23727 2.94626 3.14328 3.17729 3.29019 3.44633 3.85970 4.04283 4.21020 4.48243 4.68903 4.79196 4.81585 5.10210 5.22882 5.30383 5.32423 5.46116 5.58638 5.65407 5.69247 5.80106 5.86569 5.96916 6.02013 6.07600 6.24629 6.39756 6.62425 6.91275 7.02150 7.09949 7.14119 7.20935 7.38992 7.48948 7.87193 8.00150 8.22002 8.29710 8.61117 8.72701 8.86535 9.07902 9.19497 10.36467 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039179 B = 0.003978 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.501390 B = 7037.428301 C = 7554.045411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.041 3.959 4 C -0.141 4.141 5 C -0.122 4.122 6 C 0.060 3.940 7 H 0.056 0.944 8 C 0.153 3.847 9 N -0.758 5.758 10 C 0.226 3.774 11 C -0.297 4.297 12 C -0.075 4.075 13 C -0.195 4.195 14 C 0.146 3.854 15 C -0.472 4.472 16 H 0.074 0.926 17 C 0.079 3.921 18 N -0.798 5.798 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.287 4.287 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.384 0.616 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.278 0.722 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 15.413 3.139 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.087 4.087 4 C -0.180 4.180 5 C -0.160 4.160 6 C -0.049 4.049 7 H 0.074 0.926 8 C 0.027 3.973 9 N -0.393 5.393 10 C 0.127 3.873 11 C -0.320 4.320 12 C -0.094 4.094 13 C -0.216 4.216 14 C 0.143 3.857 15 C -0.503 4.503 16 H 0.092 0.908 17 C -0.138 4.138 18 N -0.424 5.424 19 Si 0.729 3.271 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.311 4.311 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.585 14.943 2.801 15.879 hybrid contribution -1.263 0.087 0.464 1.348 sum 3.322 15.030 3.265 15.735 Atomic orbital electron populations 1.22677 0.87565 1.02990 0.99858 1.63461 1.07936 1.13268 1.40084 1.22853 0.97817 0.89646 0.98412 1.22789 0.99939 0.97199 0.98061 1.22701 0.97357 0.94201 1.01754 1.22903 0.96096 0.94748 0.91108 0.92555 1.21024 0.88602 0.88605 0.99047 1.44518 1.06528 1.13521 1.74771 1.17487 0.94170 0.83000 0.92615 1.19866 0.94236 0.97509 1.20356 1.20428 0.96728 0.93904 0.98378 1.21037 0.91482 1.00490 1.08565 1.17304 0.92857 0.89777 0.85752 1.19461 0.99364 0.91347 1.40099 0.90772 1.25833 0.96640 0.98086 0.93215 1.69848 1.33579 1.09569 1.29392 0.86446 0.81510 0.78161 0.80962 1.18944 1.20504 1.19211 1.20434 0.94133 0.98991 1.17510 0.95714 0.91464 0.90537 0.90549 0.92937 0.90694 0.91693 0.90621 0.90141 0.93451 0.92125 0.78056 0.89646 0.89687 0.87540 0.91124 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.91 60.06 0.54 0.75 16 2 N -0.52 -6.59 5.05 -231.61 -1.17 -7.76 16 3 C 0.04 0.41 6.87 -2.83 -0.02 0.39 16 4 C -0.14 -1.21 6.94 -24.84 -0.17 -1.38 16 5 C -0.12 -1.19 6.51 -24.53 -0.16 -1.35 16 6 C 0.06 0.74 2.65 -66.19 -0.18 0.57 16 7 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16 8 C 0.15 2.39 4.71 -4.05 -0.02 2.37 16 9 N -0.76 -14.20 5.49 -58.69 -0.32 -14.53 16 10 C 0.23 5.28 6.64 -83.86 -0.56 4.72 16 11 C -0.30 -6.98 9.28 -39.09 -0.36 -7.35 16 12 C -0.08 -1.86 10.01 -39.69 -0.40 -2.26 16 13 C -0.20 -5.33 8.66 -38.83 -0.34 -5.66 16 14 C 0.15 4.07 5.51 -106.85 -0.59 3.49 16 15 C -0.47 -13.09 9.03 -37.74 -0.34 -13.43 16 16 H 0.07 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.08 2.08 5.12 -17.34 -0.09 1.99 16 18 N -0.80 -21.58 11.27 55.55 0.63 -20.95 16 19 Si 0.90 19.39 29.59 -169.99 -5.03 14.36 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.29 -7.37 9.63 -38.68 -0.37 -7.74 16 24 H 0.02 0.26 7.87 -51.93 -0.41 -0.15 16 25 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 26 H 0.08 1.03 5.67 -51.93 -0.29 0.74 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.47 7.56 -51.93 -0.39 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.06 1.02 7.57 -51.93 -0.39 0.62 16 35 H 0.38 6.68 5.73 -40.82 -0.23 6.44 16 36 H 0.09 1.82 6.66 -52.49 -0.35 1.47 16 37 H 0.08 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.11 2.99 6.54 -52.49 -0.34 2.64 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -29.39 317.56 -10.32 -39.71 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.16 Total: 9.30 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -3.05 Total: -24.91 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.87 Total: -43.24 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.39 -10.32 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.971 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds