Wall clock time and date at job start Mon Mar 30 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47449 * 110.99839 * 2 1 4 4 C 1.54314 * 107.23253 * 123.25649 * 3 2 1 5 5 C 1.55264 * 103.08561 * 22.20633 * 4 3 2 6 6 C 1.47848 * 111.00422 * 120.84201 * 2 1 3 7 7 H 1.09000 * 110.37226 * 332.58015 * 6 2 1 8 8 C 1.52994 * 110.37176 * 94.80624 * 6 2 1 9 9 N 1.46499 * 109.47689 * 296.79841 * 8 6 2 10 10 C 1.39683 * 120.00142 * 173.08606 * 9 8 6 11 11 C 1.39329 * 119.95152 * 359.97438 * 10 9 8 12 12 C 1.38477 * 120.42196 * 179.97438 * 11 10 9 13 13 C 1.37693 * 120.32888 * 0.25421 * 12 11 10 14 14 C 1.40758 * 119.88741 * 359.50012 * 13 12 11 15 15 C 1.41403 * 120.20401 * 180.24864 * 14 13 12 16 16 H 1.08002 * 120.00213 * 209.96344 * 15 14 13 17 17 C 1.39934 * 120.00214 * 29.97096 * 15 14 13 18 18 N 1.30835 * 119.99860 * 16.74644 * 17 15 14 19 19 Si 1.86793 * 120.00049 * 196.74609 * 17 15 14 20 20 H 1.48497 * 109.47447 * 60.00302 * 19 17 15 21 21 H 1.48507 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47224 * 299.99664 * 19 17 15 23 23 C 1.38278 * 119.94922 * 179.97438 * 10 9 8 24 24 H 1.08997 * 109.47352 * 290.88584 * 1 2 3 25 25 H 1.08997 * 109.47677 * 50.88890 * 1 2 3 26 26 H 1.09003 * 109.46927 * 170.89395 * 1 2 3 27 27 H 1.09000 * 109.88723 * 242.66955 * 3 2 1 28 28 H 1.09005 * 109.88372 * 3.68718 * 3 2 1 29 29 H 1.09003 * 110.70218 * 140.66643 * 4 3 2 30 30 H 1.08999 * 110.70844 * 263.89879 * 4 3 2 31 31 H 1.09004 * 111.08644 * 206.37828 * 5 4 3 32 32 H 1.09004 * 110.94036 * 82.53052 * 5 4 3 33 33 H 1.09008 * 109.46995 * 176.79487 * 8 6 2 34 34 H 1.09007 * 109.46906 * 56.79947 * 8 6 2 35 35 H 0.97006 * 119.99366 * 353.08288 * 9 8 6 36 36 H 1.07997 * 119.79078 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.84062 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.05467 * 179.71873 * 13 12 11 39 39 H 0.97000 * 119.99904 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.16563 * 0.04653 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9157 1.5137 1.2325 5 6 3.3043 0.0437 1.5467 6 6 1.9989 -0.7076 1.1850 7 1 1.2882 -0.6519 2.0096 8 6 2.3020 -2.1675 0.8422 9 7 1.0596 -2.8508 0.4737 10 6 1.1008 -4.1569 -0.0199 11 6 2.3240 -4.8087 -0.1617 12 6 2.3760 -6.1037 -0.6495 13 6 1.2189 -6.7599 -1.0048 14 6 -0.0247 -6.1160 -0.8622 15 6 -1.2176 -6.7855 -1.2201 16 1 -2.0670 -6.2219 -1.5770 17 6 -1.2979 -8.1783 -1.1116 18 7 -0.4231 -8.8297 -0.3889 19 14 -2.6539 -9.1076 -1.9987 20 1 -2.5446 -8.8673 -3.4600 21 1 -2.5195 -10.5609 -1.7241 22 1 -3.9760 -8.6336 -1.5165 23 6 -0.0726 -4.8010 -0.3669 24 1 -0.3634 0.3664 0.9601 25 1 -0.3634 0.6482 -0.7973 26 1 -0.3633 -1.0147 -0.1626 27 1 2.5696 1.5541 -0.9106 28 1 1.1752 2.0893 0.0659 29 1 3.7999 2.1035 0.9905 30 1 2.3743 1.9547 2.0694 31 1 3.5470 -0.0808 2.6020 32 1 4.1309 -0.2840 0.9162 33 1 2.7443 -2.6599 1.7084 34 1 3.0002 -2.2070 0.0061 35 1 0.2084 -2.3961 0.5724 36 1 3.2373 -4.3011 0.1112 37 1 3.3294 -6.5999 -0.7560 38 1 1.2650 -7.7681 -1.3890 39 1 -0.4789 -9.7951 -0.3135 40 1 -1.0213 -4.2965 -0.2581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313407010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:04 Heat of formation + Delta-G solvation = 6.580251 kcal Electronic energy + Delta-G solvation = -19060.691992 eV Core-core repulsion = 16259.759845 eV Total energy + Delta-G solvation = -2800.932146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41377 -39.34947 -36.51042 -34.84509 -33.06752 -31.72746 -31.49177 -28.75804 -27.14802 -26.75980 -25.10909 -22.79477 -22.14994 -21.80719 -20.94921 -19.10313 -17.54096 -17.31366 -16.94795 -16.36479 -15.97445 -15.92868 -15.23788 -14.80682 -14.63780 -14.43410 -14.11391 -13.94976 -13.84468 -13.50549 -13.33897 -12.82788 -12.76324 -12.61242 -12.29182 -12.16441 -12.10406 -12.06035 -11.97457 -11.58120 -11.53990 -11.18187 -11.03139 -10.42871 -9.28471 -9.27282 -8.58384 -7.89994 -6.31925 1.07319 1.35192 1.39669 1.51133 1.60698 2.24694 2.77395 2.84404 2.98947 3.68149 3.77920 3.85138 4.04868 4.20289 4.25306 4.42773 4.46734 4.49660 4.62600 4.72522 4.73189 4.79888 4.87850 4.96264 4.99217 5.05754 5.12651 5.15743 5.18259 5.24391 5.34832 5.41830 5.61636 5.95106 6.02822 6.05443 6.12168 6.21117 6.30039 6.65464 6.90802 7.03766 7.05877 7.25581 8.42306 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039179 B = 0.003978 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.501390 B = 7037.428301 C = 7554.045411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.546 5.546 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.064 3.936 7 H 0.059 0.941 8 C 0.150 3.850 9 N -0.749 5.749 10 C 0.233 3.767 11 C -0.299 4.299 12 C -0.075 4.075 13 C -0.227 4.227 14 C 0.118 3.882 15 C -0.511 4.511 16 H 0.071 0.929 17 C 0.037 3.963 18 N -0.830 5.830 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.310 4.310 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.286 0.714 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 16.962 3.666 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.089 4.089 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.045 4.045 7 H 0.077 0.923 8 C 0.025 3.975 9 N -0.382 5.382 10 C 0.132 3.868 11 C -0.323 4.323 12 C -0.093 4.093 13 C -0.248 4.248 14 C 0.115 3.885 15 C -0.541 4.541 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.456 5.456 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.334 4.334 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.227 0.773 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.043 16.546 3.348 17.619 hybrid contribution -1.311 -0.264 0.344 1.381 sum 3.732 16.282 3.692 17.108 Atomic orbital electron populations 1.22627 0.87512 1.01856 1.00911 1.63384 1.08242 1.15088 1.40381 1.22907 0.98452 0.88349 0.99219 1.22768 1.00320 0.96469 0.97549 1.22714 0.95700 0.94601 1.02656 1.22827 0.97730 0.92821 0.91109 0.92302 1.21220 0.86886 0.90675 0.98685 1.44641 1.08364 1.11937 1.73280 1.17583 0.93408 0.84616 0.91224 1.20171 0.95313 0.97177 1.19593 1.20725 0.96977 0.94427 0.97209 1.20968 0.92442 1.00257 1.11120 1.17665 0.93416 0.90967 0.86453 1.19734 0.99610 0.92763 1.42011 0.91061 1.26717 0.99295 0.98381 0.93313 1.69909 1.35346 1.10238 1.30147 0.85283 0.78135 0.77012 0.79382 1.18567 1.19137 1.18414 1.20548 0.95221 0.98885 1.18758 0.94470 0.90557 0.92739 0.90709 0.91879 0.89031 0.90705 0.89074 0.90408 0.92929 0.93084 0.77265 0.86991 0.87253 0.89357 0.90376 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.91 127.69 1.14 1.58 16 2 N -0.55 -12.76 5.05 -886.67 -4.48 -17.24 16 3 C 0.04 0.66 6.87 86.64 0.60 1.26 16 4 C -0.13 -1.82 6.94 31.82 0.22 -1.60 16 5 C -0.12 -1.97 6.51 32.02 0.21 -1.76 16 6 C 0.06 1.44 2.65 45.38 0.12 1.56 16 7 H 0.06 1.32 7.64 -2.39 -0.02 1.30 16 8 C 0.15 4.43 4.71 86.38 0.41 4.84 16 9 N -0.75 -27.48 5.49 -339.58 -1.86 -29.35 16 10 C 0.23 10.89 6.64 38.16 0.25 11.14 16 11 C -0.30 -13.88 9.28 22.59 0.21 -13.67 16 12 C -0.07 -3.70 10.01 22.20 0.22 -3.48 16 13 C -0.23 -12.81 8.66 22.76 0.20 -12.61 16 14 C 0.12 6.83 5.51 -21.31 -0.12 6.71 16 15 C -0.51 -29.39 9.03 23.46 0.21 -29.18 16 16 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 17 C 0.04 1.99 5.12 85.25 0.44 2.42 16 18 N -0.83 -46.03 11.27 21.82 0.25 -45.78 16 19 Si 0.98 40.23 29.59 68.60 2.03 42.26 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 C -0.31 -16.38 9.63 22.86 0.22 -16.15 16 24 H 0.04 0.72 7.87 -2.39 -0.02 0.71 16 25 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 26 H 0.05 1.44 5.67 -2.39 -0.01 1.43 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 0.97 7.56 -2.38 -0.02 0.95 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.05 1.63 7.57 -2.38 -0.02 1.61 16 35 H 0.39 13.42 5.73 -92.70 -0.53 12.89 16 36 H 0.11 4.54 6.66 -2.91 -0.02 4.52 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.09 5.18 6.54 -2.91 -0.02 5.17 16 39 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 40 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -64.72 317.56 0.75 -63.97 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.49 Total: 35.08 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 4.32 Total: -48.95 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -6.10 Total: -92.37 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -64.72 0.75 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.555 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds