Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 110.36239 * 2 1 4 4 C 1.54608 * 110.46228 * 237.55350 * 2 1 3 5 5 C 1.54265 * 104.94746 * 217.26262 * 4 2 1 6 6 H 1.09000 * 110.32523 * 119.02264 * 5 4 2 7 7 N 1.46490 * 110.32419 * 241.13170 * 5 4 2 8 8 C 1.39681 * 120.00250 * 203.57166 * 7 5 4 9 9 C 1.39341 * 119.94680 * 0.02562 * 8 7 5 10 10 C 1.38482 * 120.42159 * 179.72278 * 9 8 7 11 11 C 1.37683 * 120.32550 * 359.97438 * 10 9 8 12 12 C 1.40746 * 119.89523 * 0.02562 * 11 10 9 13 13 C 1.41415 * 120.20723 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99517 * 150.20817 * 13 12 11 15 15 C 1.39927 * 120.00065 * 330.20934 * 13 12 11 16 16 N 1.30832 * 119.99916 * 161.72638 * 15 13 12 17 17 Si 1.86797 * 119.99841 * 341.72157 * 15 13 12 18 18 H 1.48495 * 109.46988 * 95.41770 * 17 15 13 19 19 H 1.48501 * 109.46953 * 215.41261 * 17 15 13 20 20 H 1.48496 * 109.47119 * 335.41450 * 17 15 13 21 21 C 1.38279 * 119.95814 * 179.72338 * 8 7 5 22 22 C 1.54382 * 105.14850 * 0.07947 * 5 4 2 23 23 N 1.48561 * 110.41038 * 122.34601 * 2 1 3 24 24 C 1.46903 * 111.00239 * 277.94038 * 23 2 1 25 25 H 1.09004 * 109.47036 * 299.10416 * 1 2 3 26 26 H 1.08991 * 109.47050 * 59.10470 * 1 2 3 27 27 H 1.08998 * 109.46966 * 179.10656 * 1 2 3 28 28 H 1.08992 * 110.35645 * 98.41527 * 4 2 1 29 29 H 1.09000 * 110.40338 * 336.13075 * 4 2 1 30 30 H 0.96998 * 120.00062 * 23.57097 * 7 5 4 31 31 H 1.08001 * 119.78960 * 359.74310 * 9 8 7 32 32 H 1.08000 * 119.83423 * 180.02562 * 10 9 8 33 33 H 1.08005 * 120.05504 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 35 35 H 1.08003 * 120.15397 * 0.25443 * 21 8 7 36 36 H 1.09001 * 110.41569 * 142.57893 * 22 5 4 37 37 H 1.09003 * 110.41077 * 265.02624 * 22 5 4 38 38 H 1.09006 * 109.46627 * 304.70794 * 24 23 2 39 39 H 1.08997 * 109.47241 * 64.70150 * 24 23 2 40 40 H 1.08997 * 109.47113 * 184.70884 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0706 -0.7772 -1.2224 5 6 3.3210 -1.5162 -0.7029 6 1 3.1931 -2.5940 -0.8038 7 7 4.5123 -1.0756 -1.4327 8 6 5.6339 -1.9051 -1.5046 9 6 5.6182 -3.1517 -0.8823 10 6 6.7225 -3.9843 -0.9522 11 6 7.8488 -3.5891 -1.6385 12 6 7.8793 -2.3328 -2.2722 13 6 9.0329 -1.9200 -2.9785 14 1 8.9391 -1.2535 -3.8232 15 6 10.2956 -2.3750 -2.5830 16 7 11.3059 -2.3026 -3.4110 17 14 10.5387 -3.0858 -0.8727 18 1 10.4248 -4.5652 -0.9307 19 1 11.8846 -2.7124 -0.3682 20 1 9.5001 -2.5447 0.0404 21 6 6.7559 -1.4907 -2.1986 22 6 3.4302 -1.1264 0.7869 23 7 2.0482 -0.7449 1.1763 24 6 2.0542 0.1032 2.3757 25 1 -0.3633 0.4999 0.8979 26 1 -0.3633 0.5276 -0.8818 27 1 -0.3633 -1.0275 -0.0160 28 1 2.3432 -0.0866 -2.0204 29 1 1.3281 -1.4923 -1.5767 30 1 4.5224 -0.2079 -1.8660 31 1 4.7390 -3.4707 -0.3422 32 1 6.6999 -4.9487 -0.4666 33 1 8.7075 -4.2422 -1.6906 34 1 12.1813 -2.6177 -3.1367 35 1 6.7688 -0.5250 -2.6820 36 1 3.7708 -1.9763 1.3783 37 1 4.1069 -0.2808 0.9100 38 1 2.6223 1.0117 2.1753 39 1 1.0300 0.3661 2.6400 40 1 2.5150 -0.4387 3.2016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313409524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = 24.320579 kcal Electronic energy + Delta-G solvation = -19200.358063 eV Core-core repulsion = 16400.195195 eV Total energy + Delta-G solvation = -2800.162868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52454 -37.78529 -34.94215 -33.21954 -31.93088 -30.57958 -30.16929 -27.42253 -26.08270 -25.12257 -24.48523 -21.31764 -21.08674 -20.37648 -19.65496 -17.58677 -16.13510 -16.02720 -15.40580 -14.87572 -14.83309 -14.42647 -14.35855 -13.67998 -13.41446 -12.91996 -12.67986 -12.46050 -12.41697 -12.27181 -12.21450 -11.77674 -11.48278 -11.33131 -11.24590 -11.14294 -10.83936 -10.69958 -10.54029 -10.40410 -9.71521 -9.47689 -9.22668 -8.91233 -8.60642 -7.57587 -6.86741 -6.46376 -4.42626 2.71964 2.93190 3.19714 3.29615 3.41400 3.74422 4.07804 4.24781 4.52103 4.58701 4.68351 4.94246 5.16823 5.23708 5.30866 5.35822 5.42938 5.54878 5.56344 5.65663 5.71704 5.82148 5.85047 6.05967 6.07978 6.09805 6.12177 6.38290 6.58536 6.70749 6.81995 6.90046 6.91643 7.03413 7.33824 7.59809 7.71665 7.82543 8.01924 8.37537 8.44287 8.52531 8.80220 8.93518 10.16251 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.004325 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.696483 B = 6472.737794 C = 6687.381649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.127 4.127 5 C 0.157 3.843 6 H 0.088 0.912 7 N -0.753 5.753 8 C 0.234 3.766 9 C -0.300 4.300 10 C -0.048 4.048 11 C -0.271 4.271 12 C 0.126 3.874 13 C -0.452 4.452 14 H 0.088 0.912 15 C 0.086 3.914 16 N -0.814 5.814 17 Si 0.915 3.085 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.245 1.245 21 C -0.277 4.277 22 C 0.018 3.982 23 N -0.512 5.512 24 C 0.015 3.985 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.389 0.611 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.283 0.717 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.053 3.712 7.708 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 H 0.068 0.932 4 C -0.165 4.165 5 C 0.049 3.951 6 H 0.106 0.894 7 N -0.385 5.385 8 C 0.135 3.865 9 C -0.323 4.323 10 C -0.067 4.067 11 C -0.291 4.291 12 C 0.122 3.878 13 C -0.481 4.481 14 H 0.106 0.894 15 C -0.132 4.132 16 N -0.439 5.439 17 Si 0.742 3.258 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.168 1.168 21 C -0.301 4.301 22 C -0.112 4.112 23 N -0.237 5.237 24 C -0.134 4.134 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.223 0.777 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.228 3.130 7.836 18.290 hybrid contribution 0.870 0.770 0.419 1.235 sum -15.358 3.899 8.256 17.867 Atomic orbital electron populations 1.21707 0.93893 1.02474 1.01199 1.22710 0.95986 0.95800 0.90741 0.93175 1.22712 0.97376 0.99482 0.96953 1.21354 0.84644 0.99528 0.89539 0.89398 1.44647 1.12939 1.20186 1.60746 1.17557 0.85760 0.89612 0.93568 1.19946 1.00205 0.96689 1.15416 1.20374 0.93235 0.96869 0.96225 1.20899 0.98882 0.98465 1.10900 1.17440 0.92393 0.89750 0.88224 1.19453 0.89531 1.25706 1.13400 0.89441 1.26135 0.95643 0.92184 0.99279 1.69710 1.02256 1.36199 1.35713 0.86268 0.77136 0.79473 0.82927 1.19776 1.22244 1.16787 1.20401 0.95536 1.01076 1.13123 1.23732 0.88986 1.00960 0.97515 1.65340 1.18601 1.36840 1.02874 1.22493 1.01601 0.95578 0.93749 0.92916 0.92379 0.91729 0.90764 0.90192 0.77688 0.88838 0.89035 0.88580 0.90637 0.88611 0.89861 0.93200 0.95516 0.91462 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.36 37.16 0.35 -0.83 16 2 C 0.06 0.59 2.89 -65.94 -0.19 0.40 16 3 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 4 C -0.13 -1.42 6.33 -25.22 -0.16 -1.58 16 5 C 0.16 2.19 3.05 -66.55 -0.20 1.99 16 6 H 0.09 1.33 6.49 -51.93 -0.34 0.99 16 7 N -0.75 -12.43 5.25 -50.88 -0.27 -12.70 16 8 C 0.23 4.90 6.64 -83.86 -0.56 4.34 16 9 C -0.30 -6.30 9.22 -39.08 -0.36 -6.66 16 10 C -0.05 -1.07 10.01 -39.69 -0.40 -1.47 16 11 C -0.27 -6.75 7.17 -38.84 -0.28 -7.03 16 12 C 0.13 3.27 5.10 -106.85 -0.55 2.73 16 13 C -0.45 -12.58 9.57 -37.74 -0.36 -12.94 16 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.09 2.31 5.40 -17.35 -0.09 2.22 16 16 N -0.81 -22.26 13.93 55.55 0.77 -21.49 16 17 Si 0.91 21.55 24.52 -169.99 -4.17 17.39 16 18 H -0.27 -6.22 6.71 56.52 0.38 -5.84 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.24 -5.93 6.86 56.52 0.39 -5.54 16 21 C -0.28 -6.57 9.63 -38.68 -0.37 -6.95 16 22 C 0.02 0.24 6.21 -2.18 -0.01 0.23 16 23 N -0.51 -6.05 5.34 -230.19 -1.23 -7.28 16 24 C 0.01 0.15 9.41 60.07 0.57 0.71 16 25 H 0.05 0.43 7.54 -51.93 -0.39 0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.07 0.79 7.65 -51.93 -0.40 0.40 16 29 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 30 H 0.39 5.89 8.34 -40.82 -0.34 5.55 16 31 H 0.09 1.76 6.22 -52.49 -0.33 1.43 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.10 2.40 4.73 -52.48 -0.25 2.15 16 34 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 35 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 38 H 0.03 0.27 7.97 -51.93 -0.41 -0.15 16 39 H 0.07 0.59 7.53 -51.93 -0.39 0.19 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -28.24 314.84 -8.97 -37.21 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.20 Total: 6.95 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.62 Total: -24.82 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.72 Total: -41.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.17 Total: 17.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.24 -8.97 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds