Wall clock time and date at job start Mon Mar 30 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 110.36239 * 2 1 4 4 C 1.54608 * 110.46228 * 237.55350 * 2 1 3 5 5 C 1.54265 * 104.94746 * 217.26262 * 4 2 1 6 6 H 1.09000 * 110.32523 * 119.02264 * 5 4 2 7 7 N 1.46490 * 110.32419 * 241.13170 * 5 4 2 8 8 C 1.39681 * 120.00250 * 203.57166 * 7 5 4 9 9 C 1.39341 * 119.94680 * 0.02562 * 8 7 5 10 10 C 1.38482 * 120.42159 * 179.72278 * 9 8 7 11 11 C 1.37683 * 120.32550 * 359.97438 * 10 9 8 12 12 C 1.40746 * 119.89523 * 0.02562 * 11 10 9 13 13 C 1.41415 * 120.20723 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99517 * 150.20817 * 13 12 11 15 15 C 1.39927 * 120.00065 * 330.20934 * 13 12 11 16 16 N 1.30832 * 119.99916 * 161.72638 * 15 13 12 17 17 Si 1.86797 * 119.99841 * 341.72157 * 15 13 12 18 18 H 1.48495 * 109.46988 * 95.41770 * 17 15 13 19 19 H 1.48501 * 109.46953 * 215.41261 * 17 15 13 20 20 H 1.48496 * 109.47119 * 335.41450 * 17 15 13 21 21 C 1.38279 * 119.95814 * 179.72338 * 8 7 5 22 22 C 1.54382 * 105.14850 * 0.07947 * 5 4 2 23 23 N 1.48561 * 110.41038 * 122.34601 * 2 1 3 24 24 C 1.46903 * 111.00239 * 277.94038 * 23 2 1 25 25 H 1.09004 * 109.47036 * 299.10416 * 1 2 3 26 26 H 1.08991 * 109.47050 * 59.10470 * 1 2 3 27 27 H 1.08998 * 109.46966 * 179.10656 * 1 2 3 28 28 H 1.08992 * 110.35645 * 98.41527 * 4 2 1 29 29 H 1.09000 * 110.40338 * 336.13075 * 4 2 1 30 30 H 0.96998 * 120.00062 * 23.57097 * 7 5 4 31 31 H 1.08001 * 119.78960 * 359.74310 * 9 8 7 32 32 H 1.08000 * 119.83423 * 180.02562 * 10 9 8 33 33 H 1.08005 * 120.05504 * 180.02562 * 11 10 9 34 34 H 0.96997 * 120.00108 * 179.97438 * 16 15 13 35 35 H 1.08003 * 120.15397 * 0.25443 * 21 8 7 36 36 H 1.09001 * 110.41569 * 142.57893 * 22 5 4 37 37 H 1.09003 * 110.41077 * 265.02624 * 22 5 4 38 38 H 1.09006 * 109.46627 * 304.70794 * 24 23 2 39 39 H 1.08997 * 109.47241 * 64.70150 * 24 23 2 40 40 H 1.08997 * 109.47113 * 184.70884 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0706 -0.7772 -1.2224 5 6 3.3210 -1.5162 -0.7029 6 1 3.1931 -2.5940 -0.8038 7 7 4.5123 -1.0756 -1.4327 8 6 5.6339 -1.9051 -1.5046 9 6 5.6182 -3.1517 -0.8823 10 6 6.7225 -3.9843 -0.9522 11 6 7.8488 -3.5891 -1.6385 12 6 7.8793 -2.3328 -2.2722 13 6 9.0329 -1.9200 -2.9785 14 1 8.9391 -1.2535 -3.8232 15 6 10.2956 -2.3750 -2.5830 16 7 11.3059 -2.3026 -3.4110 17 14 10.5387 -3.0858 -0.8727 18 1 10.4248 -4.5652 -0.9307 19 1 11.8846 -2.7124 -0.3682 20 1 9.5001 -2.5447 0.0404 21 6 6.7559 -1.4907 -2.1986 22 6 3.4302 -1.1264 0.7869 23 7 2.0482 -0.7449 1.1763 24 6 2.0542 0.1032 2.3757 25 1 -0.3633 0.4999 0.8979 26 1 -0.3633 0.5276 -0.8818 27 1 -0.3633 -1.0275 -0.0160 28 1 2.3432 -0.0866 -2.0204 29 1 1.3281 -1.4923 -1.5767 30 1 4.5224 -0.2079 -1.8660 31 1 4.7390 -3.4707 -0.3422 32 1 6.6999 -4.9487 -0.4666 33 1 8.7075 -4.2422 -1.6906 34 1 12.1813 -2.6177 -3.1367 35 1 6.7688 -0.5250 -2.6820 36 1 3.7708 -1.9763 1.3783 37 1 4.1069 -0.2808 0.9100 38 1 2.6223 1.0117 2.1753 39 1 1.0300 0.3661 2.6400 40 1 2.5150 -0.4387 3.2016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313409524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:31 Heat of formation + Delta-G solvation = 5.993360 kcal Electronic energy + Delta-G solvation = -19201.152790 eV Core-core repulsion = 16400.195195 eV Total energy + Delta-G solvation = -2800.957596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64697 -39.40384 -36.47008 -35.04781 -32.83671 -32.04557 -31.82351 -28.90908 -27.16805 -26.79007 -25.51727 -22.85056 -22.76912 -21.42672 -20.96689 -19.38798 -17.83287 -17.18013 -16.94641 -16.45047 -15.91452 -15.84641 -15.56340 -15.03029 -14.64173 -14.38592 -14.27813 -13.99599 -13.78642 -13.38785 -13.37702 -13.01750 -12.90279 -12.73995 -12.49532 -12.25585 -12.16471 -12.11637 -12.01322 -11.62742 -11.53745 -11.31797 -11.04005 -10.58076 -9.53417 -9.47025 -8.87075 -8.09469 -6.49384 0.86704 1.10017 1.29819 1.44239 1.53155 2.17274 2.56086 2.67451 3.17258 3.56644 3.63011 3.72172 4.04237 4.23688 4.30736 4.40784 4.46172 4.51504 4.53674 4.62289 4.72793 4.75777 4.85667 4.91234 4.95184 4.97788 5.03897 5.06496 5.09334 5.17423 5.23067 5.39528 5.54920 5.72971 5.84476 5.88761 6.01128 6.04442 6.12164 6.39609 6.70488 6.83305 6.90176 7.08877 8.22041 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.004325 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.696483 B = 6472.737794 C = 6687.381649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.121 4.121 5 C 0.152 3.848 6 H 0.083 0.917 7 N -0.742 5.742 8 C 0.244 3.756 9 C -0.288 4.288 10 C -0.048 4.048 11 C -0.293 4.293 12 C 0.107 3.893 13 C -0.490 4.490 14 H 0.052 0.948 15 C 0.049 3.951 16 N -0.855 5.855 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.280 1.280 20 H -0.256 1.256 21 C -0.296 4.296 22 C 0.022 3.978 23 N -0.516 5.516 24 C 0.013 3.987 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.397 0.603 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.292 0.708 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.083 0.917 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.872 3.190 9.744 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.052 4.052 3 H 0.068 0.932 4 C -0.159 4.159 5 C 0.045 3.955 6 H 0.101 0.899 7 N -0.373 5.373 8 C 0.142 3.858 9 C -0.310 4.310 10 C -0.067 4.067 11 C -0.314 4.314 12 C 0.104 3.896 13 C -0.520 4.520 14 H 0.070 0.930 15 C -0.165 4.165 16 N -0.482 5.482 17 Si 0.795 3.205 18 H -0.184 1.184 19 H -0.207 1.207 20 H -0.179 1.179 21 C -0.320 4.320 22 C -0.107 4.107 23 N -0.241 5.241 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.232 0.768 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.102 0.898 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.090 2.632 9.872 21.652 hybrid contribution 1.448 0.989 -0.177 1.763 sum -17.642 3.621 9.695 20.454 Atomic orbital electron populations 1.21678 0.92203 1.02658 1.02239 1.22782 0.97262 0.95412 0.89766 0.93220 1.22702 0.96087 0.99681 0.97451 1.21541 0.84490 0.99641 0.89798 0.89855 1.44732 1.12440 1.19865 1.60239 1.17600 0.86102 0.90159 0.91926 1.20357 1.00714 0.96014 1.13962 1.20762 0.92331 0.98353 0.95224 1.20959 1.00081 0.98072 1.12260 1.17586 0.92465 0.90819 0.88713 1.19458 0.91399 1.27177 1.14006 0.93022 1.26802 0.94991 0.92424 1.02255 1.69737 1.02990 1.38172 1.37284 0.85407 0.77173 0.79356 0.78547 1.18449 1.20694 1.17950 1.20510 0.96246 1.01110 1.14136 1.23578 0.90024 1.00231 0.96916 1.65372 1.17058 1.37830 1.03820 1.22550 1.02690 0.95211 0.93060 0.92272 0.91027 0.91942 0.90106 0.89017 0.76820 0.85834 0.85689 0.89095 0.89740 0.88865 0.90533 0.94528 0.95690 0.89801 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.36 71.99 0.67 -1.13 16 2 C 0.06 1.00 2.89 45.14 0.13 1.13 16 3 H 0.05 0.91 7.90 -2.39 -0.02 0.89 16 4 C -0.12 -2.32 6.33 31.57 0.20 -2.12 16 5 C 0.15 3.80 3.05 45.89 0.14 3.94 16 6 H 0.08 2.22 6.49 -2.39 -0.02 2.20 16 7 N -0.74 -22.89 5.25 -314.90 -1.65 -24.54 16 8 C 0.24 9.82 6.64 38.17 0.25 10.07 16 9 C -0.29 -11.24 9.22 22.59 0.21 -11.03 16 10 C -0.05 -2.02 10.01 22.20 0.22 -1.79 16 11 C -0.29 -14.44 7.17 22.75 0.16 -14.27 16 12 C 0.11 5.72 5.10 -21.31 -0.11 5.61 16 13 C -0.49 -28.80 9.57 23.46 0.22 -28.57 16 14 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 15 C 0.05 2.74 5.40 85.25 0.46 3.20 16 16 N -0.85 -48.66 13.93 21.82 0.30 -48.36 16 17 Si 0.97 44.98 24.52 68.60 1.68 46.66 16 18 H -0.26 -11.35 6.71 99.48 0.67 -10.68 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -12.15 6.86 99.48 0.68 -11.47 16 21 C -0.30 -14.15 9.63 22.86 0.22 -13.93 16 22 C 0.02 0.55 6.21 86.45 0.54 1.09 16 23 N -0.52 -10.69 5.34 -882.19 -4.71 -15.40 16 24 C 0.01 0.24 9.41 127.69 1.20 1.44 16 25 H 0.06 0.75 7.54 -2.38 -0.02 0.74 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 28 H 0.08 1.47 7.65 -2.39 -0.02 1.45 16 29 H 0.09 1.59 7.86 -2.39 -0.02 1.57 16 30 H 0.40 11.28 8.34 -92.71 -0.77 10.50 16 31 H 0.12 4.10 6.22 -2.91 -0.02 4.09 16 32 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.09 4.51 4.73 -2.91 -0.01 4.49 16 34 H 0.29 14.92 8.30 -92.71 -0.77 14.16 16 35 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.00 7.89 -2.39 -0.02 0.98 16 38 H 0.02 0.44 7.97 -2.38 -0.02 0.43 16 39 H 0.08 1.19 7.53 -2.39 -0.02 1.17 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -62.44 314.84 0.34 -62.10 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.19 Total: 25.89 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.53 Total: -46.35 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -6.06 Total: -88.30 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.68 Total: 46.66 kcal Total: -62.44 0.34 -62.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.095 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds