Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.36161 * 2 1 4 4 C 1.54376 * 110.51215 * 237.58119 * 2 1 3 5 5 C 1.54259 * 105.05919 * 217.31496 * 4 2 1 6 6 H 1.08995 * 110.32649 * 241.00011 * 5 4 2 7 7 N 1.46502 * 110.32148 * 118.89641 * 5 4 2 8 8 C 1.39686 * 119.99934 * 155.00314 * 7 5 4 9 9 C 1.39339 * 119.95084 * 359.72171 * 8 7 5 10 10 C 1.38474 * 120.42425 * 179.72115 * 9 8 7 11 11 C 1.37688 * 120.32494 * 0.55672 * 10 9 8 12 12 C 1.40747 * 119.89269 * 359.72490 * 11 10 9 13 13 C 1.41407 * 120.21071 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00570 * 204.43636 * 13 12 11 15 15 C 1.39931 * 119.99923 * 24.43944 * 13 12 11 16 16 N 1.30833 * 119.99658 * 17.88722 * 15 13 12 17 17 Si 1.86803 * 120.00211 * 197.88703 * 15 13 12 18 18 H 1.48500 * 109.46861 * 59.99860 * 17 15 13 19 19 H 1.48504 * 109.46976 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46801 * 299.99877 * 17 15 13 21 21 C 1.38275 * 119.95492 * 180.02562 * 8 7 5 22 22 C 1.54379 * 105.05987 * 0.02562 * 5 4 2 23 23 N 1.48552 * 104.59524 * 23.85047 * 22 5 4 24 24 C 1.46903 * 111.00322 * 200.95915 * 23 22 5 25 25 H 1.08996 * 109.47213 * 299.10311 * 1 2 3 26 26 H 1.08998 * 109.47167 * 59.11103 * 1 2 3 27 27 H 1.09007 * 109.46682 * 179.10570 * 1 2 3 28 28 H 1.09005 * 110.32259 * 336.20905 * 4 2 1 29 29 H 1.09003 * 110.32416 * 98.31678 * 4 2 1 30 30 H 0.96998 * 119.99991 * 335.00108 * 7 5 4 31 31 H 1.07999 * 119.78629 * 0.02562 * 9 8 7 32 32 H 1.08006 * 119.83977 * 180.27972 * 10 9 8 33 33 H 1.08003 * 120.05837 * 179.69439 * 11 10 9 34 34 H 0.97007 * 120.00023 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.15921 * 359.97040 * 21 8 7 36 36 H 1.09004 * 110.41221 * 265.07166 * 22 5 4 37 37 H 1.09004 * 110.41048 * 142.63186 * 22 5 4 38 38 H 1.08998 * 109.47435 * 175.41938 * 24 23 22 39 39 H 1.09002 * 109.46919 * 55.42127 * 24 23 22 40 40 H 1.09001 * 109.46925 * 295.42318 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0710 -0.7751 -1.2205 5 6 3.3210 -1.5161 -0.7029 6 1 4.2072 -1.1896 -1.2471 7 7 3.1466 -2.9644 -0.8385 8 6 4.2643 -3.7959 -0.9411 9 6 5.5445 -3.2463 -0.9201 10 6 6.6595 -4.0619 -1.0154 11 6 6.5147 -5.4252 -1.1433 12 6 5.2277 -5.9942 -1.1718 13 6 5.0711 -7.3935 -1.3025 14 1 4.1575 -7.7989 -1.7116 15 6 6.1000 -8.2531 -0.9016 16 7 7.0398 -7.8197 -0.1012 17 14 6.1317 -10.0192 -1.5094 18 1 6.2116 -10.0310 -2.9922 19 1 7.3147 -10.7161 -0.9437 20 1 4.8935 -10.7145 -1.0747 21 6 4.0986 -5.1627 -1.0695 22 6 3.4298 -1.1268 0.7870 23 7 2.0477 -0.7457 1.1762 24 6 2.0534 0.1020 2.3759 25 1 -0.3633 0.4998 0.8979 26 1 -0.3633 0.5276 -0.8819 27 1 -0.3633 -1.0276 -0.0160 28 1 1.3276 -1.4890 -1.5755 29 1 2.3421 -0.0837 -2.0184 30 1 2.2550 -3.3458 -0.8570 31 1 5.6681 -2.1777 -0.8241 32 1 7.6475 -3.6262 -0.9936 33 1 7.3871 -6.0568 -1.2222 34 1 7.7532 -8.4155 0.1765 35 1 3.1067 -5.5894 -1.0903 36 1 4.1064 -0.2811 0.9106 37 1 3.7705 -1.9769 1.3782 38 1 1.0375 0.4331 2.5917 39 1 2.6897 0.9702 2.2043 40 1 2.4371 -0.4682 3.2219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313409527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = 24.424232 kcal Electronic energy + Delta-G solvation = -19160.496167 eV Core-core repulsion = 16360.337794 eV Total energy + Delta-G solvation = -2800.158373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.41223 -37.46680 -34.76339 -33.07666 -31.82121 -30.33402 -29.64456 -26.93594 -25.97626 -25.18189 -24.46431 -21.25673 -20.77495 -20.05962 -19.57789 -17.30355 -16.13821 -15.66534 -15.34667 -14.82250 -14.75129 -14.32819 -14.01823 -13.56593 -13.03519 -12.78697 -12.67022 -12.29779 -12.07546 -12.01876 -11.99556 -11.63075 -11.37729 -11.14291 -11.06640 -11.01543 -10.96932 -10.67506 -10.52083 -10.27702 -9.70132 -9.27097 -9.15878 -8.67833 -8.46877 -7.33705 -6.66655 -6.13991 -4.26230 2.91172 3.11945 3.15156 3.27749 3.41860 3.99562 4.00625 4.27042 4.65013 4.70595 4.80193 5.04854 5.22893 5.32327 5.40159 5.45279 5.47270 5.67042 5.72719 5.76626 5.83239 5.87875 5.96157 6.08141 6.17088 6.30062 6.38981 6.59529 6.86491 7.03782 7.09621 7.14763 7.16525 7.39886 7.46967 7.85465 7.97026 8.19366 8.30878 8.57340 8.72140 8.84660 9.05092 9.17783 10.29440 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037162 B = 0.004044 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.281266 B = 6922.382769 C = 7103.860805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.055 3.945 3 H 0.049 0.951 4 C -0.128 4.128 5 C 0.160 3.840 6 H 0.083 0.917 7 N -0.747 5.747 8 C 0.226 3.774 9 C -0.304 4.304 10 C -0.075 4.075 11 C -0.200 4.200 12 C 0.142 3.858 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.792 5.792 17 Si 0.905 3.095 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.289 4.289 22 C 0.016 3.984 23 N -0.508 5.508 24 C 0.015 3.985 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.389 0.611 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.279 0.721 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 12.644 0.692 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 H 0.067 0.933 4 C -0.167 4.167 5 C 0.052 3.948 6 H 0.101 0.899 7 N -0.379 5.379 8 C 0.127 3.873 9 C -0.327 4.327 10 C -0.094 4.094 11 C -0.221 4.221 12 C 0.139 3.861 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.418 5.418 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.313 4.313 22 C -0.114 4.114 23 N -0.232 5.232 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.223 0.777 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.585 12.259 0.979 14.449 hybrid contribution 0.306 -0.148 -0.145 0.369 sum -7.279 12.111 0.835 14.155 Atomic orbital electron populations 1.21703 0.93960 1.02531 1.01047 1.22674 0.96035 0.95606 0.91006 0.93324 1.22704 0.97910 0.99238 0.96803 1.21305 0.97273 0.82779 0.93431 0.89936 1.44494 1.06237 1.03165 1.84043 1.17483 0.86128 0.89549 0.94104 1.19854 0.91321 0.96876 1.24636 1.20426 0.95640 0.94247 0.99090 1.21158 0.97886 0.92924 1.10112 1.17327 0.90587 0.92556 0.85629 1.19520 1.01428 0.91119 1.37466 0.90714 1.25882 0.94453 1.00909 0.92692 1.69862 1.10742 1.37615 1.23550 0.86425 0.78465 0.81843 0.80262 1.18894 1.20438 1.19111 1.20393 0.97656 0.90967 1.22242 1.23792 0.88774 1.00409 0.98380 1.65356 1.18815 1.36429 1.02599 1.22500 1.01256 0.95602 0.94083 0.92967 0.92477 0.91717 0.90241 0.90899 0.77685 0.89788 0.89795 0.86862 0.91038 0.89355 0.94053 0.89105 0.91615 0.95721 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.35 37.16 0.35 -0.95 16 2 C 0.06 0.62 2.88 -66.06 -0.19 0.43 16 3 H 0.05 0.51 7.97 -51.93 -0.41 0.10 16 4 C -0.13 -1.54 6.31 -25.35 -0.16 -1.70 16 5 C 0.16 2.41 3.12 -66.55 -0.21 2.20 16 6 H 0.08 1.30 6.39 -51.93 -0.33 0.97 16 7 N -0.75 -13.57 5.24 -50.88 -0.27 -13.84 16 8 C 0.23 5.11 6.64 -83.86 -0.56 4.55 16 9 C -0.30 -6.93 9.23 -39.08 -0.36 -7.29 16 10 C -0.07 -1.82 10.01 -39.70 -0.40 -2.22 16 11 C -0.20 -5.39 8.69 -38.84 -0.34 -5.73 16 12 C 0.14 3.91 5.57 -106.85 -0.60 3.32 16 13 C -0.47 -12.74 9.05 -37.74 -0.34 -13.08 16 14 H 0.07 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 16 N -0.79 -21.07 10.96 55.55 0.61 -20.46 16 17 Si 0.91 19.12 29.60 -169.99 -5.03 14.09 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.29 -7.30 9.63 -38.68 -0.37 -7.67 16 22 C 0.02 0.23 6.21 -2.19 -0.01 0.22 16 23 N -0.51 -6.64 5.34 -230.33 -1.23 -7.87 16 24 C 0.01 0.16 9.45 60.07 0.57 0.73 16 25 H 0.05 0.47 7.43 -51.93 -0.39 0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.08 0.97 7.37 -51.93 -0.38 0.58 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.39 6.73 8.36 -40.82 -0.34 6.39 16 31 H 0.08 1.72 6.18 -52.49 -0.32 1.40 16 32 H 0.08 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.11 3.15 6.15 -52.48 -0.32 2.82 16 34 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.04 0.56 7.90 -51.93 -0.41 0.15 16 37 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 38 H 0.07 0.63 7.39 -51.93 -0.38 0.25 16 39 H 0.02 0.25 7.97 -51.93 -0.41 -0.16 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -28.29 319.79 -10.02 -38.31 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.21 Total: 10.22 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.71 Total: -25.27 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.89 Total: -42.17 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.29 -10.02 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.733 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds