Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.36161 * 2 1 4 4 C 1.54376 * 110.51215 * 237.58119 * 2 1 3 5 5 C 1.54259 * 105.05919 * 217.31496 * 4 2 1 6 6 H 1.08995 * 110.32649 * 241.00011 * 5 4 2 7 7 N 1.46502 * 110.32148 * 118.89641 * 5 4 2 8 8 C 1.39686 * 119.99934 * 155.00314 * 7 5 4 9 9 C 1.39339 * 119.95084 * 359.72171 * 8 7 5 10 10 C 1.38474 * 120.42425 * 179.72115 * 9 8 7 11 11 C 1.37688 * 120.32494 * 0.55672 * 10 9 8 12 12 C 1.40747 * 119.89269 * 359.72490 * 11 10 9 13 13 C 1.41407 * 120.21071 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00570 * 204.43636 * 13 12 11 15 15 C 1.39931 * 119.99923 * 24.43944 * 13 12 11 16 16 N 1.30833 * 119.99658 * 17.88722 * 15 13 12 17 17 Si 1.86803 * 120.00211 * 197.88703 * 15 13 12 18 18 H 1.48500 * 109.46861 * 59.99860 * 17 15 13 19 19 H 1.48504 * 109.46976 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46801 * 299.99877 * 17 15 13 21 21 C 1.38275 * 119.95492 * 180.02562 * 8 7 5 22 22 C 1.54379 * 105.05987 * 0.02562 * 5 4 2 23 23 N 1.48552 * 104.59524 * 23.85047 * 22 5 4 24 24 C 1.46903 * 111.00322 * 200.95915 * 23 22 5 25 25 H 1.08996 * 109.47213 * 299.10311 * 1 2 3 26 26 H 1.08998 * 109.47167 * 59.11103 * 1 2 3 27 27 H 1.09007 * 109.46682 * 179.10570 * 1 2 3 28 28 H 1.09005 * 110.32259 * 336.20905 * 4 2 1 29 29 H 1.09003 * 110.32416 * 98.31678 * 4 2 1 30 30 H 0.96998 * 119.99991 * 335.00108 * 7 5 4 31 31 H 1.07999 * 119.78629 * 0.02562 * 9 8 7 32 32 H 1.08006 * 119.83977 * 180.27972 * 10 9 8 33 33 H 1.08003 * 120.05837 * 179.69439 * 11 10 9 34 34 H 0.97007 * 120.00023 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.15921 * 359.97040 * 21 8 7 36 36 H 1.09004 * 110.41221 * 265.07166 * 22 5 4 37 37 H 1.09004 * 110.41048 * 142.63186 * 22 5 4 38 38 H 1.08998 * 109.47435 * 175.41938 * 24 23 22 39 39 H 1.09002 * 109.46919 * 55.42127 * 24 23 22 40 40 H 1.09001 * 109.46925 * 295.42318 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0710 -0.7751 -1.2205 5 6 3.3210 -1.5161 -0.7029 6 1 4.2072 -1.1896 -1.2471 7 7 3.1466 -2.9644 -0.8385 8 6 4.2643 -3.7959 -0.9411 9 6 5.5445 -3.2463 -0.9201 10 6 6.6595 -4.0619 -1.0154 11 6 6.5147 -5.4252 -1.1433 12 6 5.2277 -5.9942 -1.1718 13 6 5.0711 -7.3935 -1.3025 14 1 4.1575 -7.7989 -1.7116 15 6 6.1000 -8.2531 -0.9016 16 7 7.0398 -7.8197 -0.1012 17 14 6.1317 -10.0192 -1.5094 18 1 6.2116 -10.0310 -2.9922 19 1 7.3147 -10.7161 -0.9437 20 1 4.8935 -10.7145 -1.0747 21 6 4.0986 -5.1627 -1.0695 22 6 3.4298 -1.1268 0.7870 23 7 2.0477 -0.7457 1.1762 24 6 2.0534 0.1020 2.3759 25 1 -0.3633 0.4998 0.8979 26 1 -0.3633 0.5276 -0.8819 27 1 -0.3633 -1.0276 -0.0160 28 1 1.3276 -1.4890 -1.5755 29 1 2.3421 -0.0837 -2.0184 30 1 2.2550 -3.3458 -0.8570 31 1 5.6681 -2.1777 -0.8241 32 1 7.6475 -3.6262 -0.9936 33 1 7.3871 -6.0568 -1.2222 34 1 7.7532 -8.4155 0.1765 35 1 3.1067 -5.5894 -1.0903 36 1 4.1064 -0.2811 0.9106 37 1 3.7705 -1.9769 1.3782 38 1 1.0375 0.4331 2.5917 39 1 2.6897 0.9702 2.2043 40 1 2.4371 -0.4682 3.2219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313409527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = 7.331048 kcal Electronic energy + Delta-G solvation = -19161.237383 eV Core-core repulsion = 16360.337794 eV Total energy + Delta-G solvation = -2800.899589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57699 -39.19797 -36.40077 -34.82858 -32.77982 -31.80669 -31.45744 -28.55170 -27.19779 -26.84893 -25.54694 -22.86796 -22.50529 -21.12190 -21.07956 -19.13425 -17.50195 -17.13435 -16.87198 -16.35231 -16.18864 -15.76392 -15.20734 -14.77561 -14.53441 -14.37378 -13.98846 -13.85906 -13.44140 -13.17237 -13.12565 -13.09837 -12.80363 -12.65125 -12.52982 -12.31938 -12.14153 -12.06327 -11.93993 -11.57692 -11.55283 -11.16172 -11.03690 -10.43342 -9.43460 -9.32053 -8.59489 -7.90182 -6.30984 1.07295 1.36677 1.39814 1.51009 1.61984 2.23658 2.80509 2.81899 3.05377 3.67014 3.69782 3.90526 4.14808 4.22791 4.33035 4.50424 4.50496 4.53345 4.56925 4.67677 4.76385 4.83105 4.92053 4.97317 4.99208 5.07741 5.16070 5.18135 5.18399 5.30294 5.39630 5.44576 5.60948 5.87959 5.99371 6.05306 6.12211 6.22359 6.34305 6.65825 6.92931 7.04136 7.08069 7.27925 8.38722 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037162 B = 0.004044 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.281266 B = 6922.382769 C = 7103.860805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.121 4.121 5 C 0.153 3.847 6 H 0.081 0.919 7 N -0.738 5.738 8 C 0.237 3.763 9 C -0.303 4.303 10 C -0.075 4.075 11 C -0.234 4.234 12 C 0.114 3.886 13 C -0.505 4.505 14 H 0.071 0.929 15 C 0.037 3.963 16 N -0.824 5.824 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.313 4.313 22 C 0.022 3.978 23 N -0.525 5.525 24 C 0.014 3.986 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.394 0.606 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.287 0.713 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 14.273 0.433 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 H 0.081 0.919 4 C -0.160 4.160 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.369 5.369 8 C 0.136 3.864 9 C -0.326 4.326 10 C -0.094 4.094 11 C -0.254 4.254 12 C 0.111 3.889 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.178 4.178 16 N -0.450 5.450 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.338 4.338 22 C -0.108 4.108 23 N -0.250 5.250 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.228 0.772 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.546 13.940 0.731 16.368 hybrid contribution 0.525 -0.472 -0.012 0.706 sum -8.021 13.469 0.719 15.692 Atomic orbital electron populations 1.21684 0.92712 1.02125 1.02330 1.22744 0.96951 0.95796 0.89548 0.91904 1.22697 0.96201 0.99291 0.97789 1.21551 0.98983 0.80764 0.94115 0.90141 1.44581 1.05194 1.04372 1.82704 1.17534 0.87621 0.89216 0.92062 1.20152 0.90834 0.98167 1.23434 1.20725 0.97416 0.93482 0.97760 1.21090 0.97161 0.94022 1.13174 1.17687 0.91576 0.93361 0.86312 1.19788 1.02450 0.91907 1.39349 0.91061 1.26756 0.93517 1.05405 0.92138 1.69923 1.11367 1.39514 1.24181 0.85276 0.78971 0.75933 0.79612 1.18492 1.19065 1.18443 1.20507 0.97136 0.92308 1.23807 1.23588 0.90249 0.99728 0.97223 1.65331 1.17619 1.38028 1.04007 1.22532 1.02426 0.95487 0.92967 0.92237 0.90674 0.92974 0.90378 0.88778 0.77187 0.86954 0.87469 0.88670 0.90294 0.89445 0.92681 0.92414 0.90109 0.94673 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.35 71.98 0.67 -1.45 16 2 C 0.06 1.11 2.88 45.06 0.13 1.24 16 3 H 0.06 1.07 7.97 -2.39 -0.02 1.05 16 4 C -0.12 -2.56 6.31 31.49 0.20 -2.36 16 5 C 0.15 4.28 3.12 45.89 0.14 4.42 16 6 H 0.08 2.32 6.39 -2.39 -0.02 2.30 16 7 N -0.74 -26.14 5.24 -314.89 -1.65 -27.79 16 8 C 0.24 10.72 6.64 38.16 0.25 10.98 16 9 C -0.30 -13.58 9.23 22.59 0.21 -13.38 16 10 C -0.07 -3.66 10.01 22.20 0.22 -3.43 16 11 C -0.23 -13.04 8.69 22.75 0.20 -12.84 16 12 C 0.11 6.51 5.57 -21.31 -0.12 6.39 16 13 C -0.51 -28.81 9.05 23.46 0.21 -28.60 16 14 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 15 C 0.04 1.94 5.14 85.25 0.44 2.38 16 16 N -0.82 -45.14 10.96 21.82 0.24 -44.90 16 17 Si 0.98 39.79 29.60 68.60 2.03 41.82 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 21 C -0.31 -16.32 9.63 22.86 0.22 -16.10 16 22 C 0.02 0.60 6.21 86.45 0.54 1.14 16 23 N -0.53 -12.60 5.34 -882.63 -4.71 -17.32 16 24 C 0.01 0.28 9.45 127.69 1.21 1.49 16 25 H 0.06 0.88 7.43 -2.39 -0.02 0.86 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.98 8.12 -2.38 -0.02 0.96 16 28 H 0.08 1.70 7.37 -2.38 -0.02 1.68 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.39 13.34 8.36 -92.71 -0.78 12.57 16 31 H 0.11 4.35 6.18 -2.91 -0.02 4.34 16 32 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 34 H 0.29 14.17 8.30 -92.70 -0.77 13.40 16 35 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.06 1.36 7.90 -2.38 -0.02 1.34 16 37 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 38 H 0.08 1.33 7.39 -2.39 -0.02 1.31 16 39 H 0.03 0.61 7.97 -2.39 -0.02 0.59 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -62.96 319.79 0.68 -62.28 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.25 Total: 36.04 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 4.52 Total: -50.13 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -6.12 Total: -90.01 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -62.96 0.68 -62.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.615 kcal (2) G-P(sol) polarization free energy of solvation -62.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds