Wall clock time and date at job start Mon Mar 30 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47326 * 2 1 4 4 C 1.48531 * 111.00109 * 307.40113 * 3 2 1 5 5 C 1.54931 * 103.22705 * 200.27785 * 4 3 2 6 6 C 1.54596 * 102.92151 * 37.40970 * 5 4 3 7 7 H 1.09001 * 110.39511 * 219.08429 * 6 5 4 8 8 N 1.46503 * 110.30658 * 96.96080 * 6 5 4 9 9 C 1.39683 * 119.99825 * 89.28642 * 8 6 5 10 10 C 1.39334 * 119.95671 * 359.97438 * 9 8 6 11 11 C 1.38478 * 120.42737 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32681 * 359.97438 * 11 10 9 13 13 C 1.40756 * 119.89334 * 0.02562 * 12 11 10 14 14 C 1.41402 * 120.20935 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99988 * 330.01854 * 14 13 12 16 16 C 1.39931 * 119.99742 * 150.30308 * 14 13 12 17 17 N 1.30832 * 119.99748 * 161.76640 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 341.76044 * 16 14 13 19 19 H 1.48501 * 109.46771 * 95.40706 * 18 16 14 20 20 H 1.48499 * 109.47313 * 215.40508 * 18 16 14 21 21 H 1.48504 * 109.47098 * 335.41138 * 18 16 14 22 22 C 1.38287 * 119.94997 * 180.30082 * 9 8 6 23 23 C 1.47899 * 111.00048 * 189.99867 * 3 2 1 24 24 H 1.09002 * 109.46913 * 300.00145 * 1 2 3 25 25 H 1.09000 * 109.46866 * 59.99330 * 1 2 3 26 26 H 1.08995 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47043 * 240.00387 * 2 1 3 28 28 H 1.08994 * 109.47079 * 120.00290 * 2 1 3 29 29 H 1.08998 * 110.66506 * 318.71181 * 4 3 2 30 30 H 1.08997 * 110.67048 * 81.67554 * 4 3 2 31 31 H 1.09000 * 110.72649 * 279.05250 * 5 4 3 32 32 H 1.09006 * 110.72670 * 155.77072 * 5 4 3 33 33 H 0.96998 * 119.99740 * 269.28168 * 8 6 5 34 34 H 1.08003 * 119.78318 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83620 * 180.02562 * 11 10 9 36 36 H 1.07992 * 120.05692 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00021 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.16408 * 359.97438 * 22 9 8 39 39 H 1.09005 * 109.91689 * 26.49502 * 23 3 2 40 40 H 1.08998 * 109.91828 * 265.19662 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4032 2.1676 -1.1016 5 6 2.3781 3.3585 -1.2792 6 6 3.7624 2.7090 -1.0511 7 1 4.4085 3.3805 -0.4856 8 7 4.3822 2.3693 -2.3343 9 6 5.1844 3.3048 -2.9919 10 6 5.3941 4.5610 -2.4268 11 6 6.1871 5.4961 -3.0705 12 6 6.7780 5.1941 -4.2768 13 6 6.5754 3.9291 -4.8600 14 6 7.1795 3.6116 -6.0984 15 1 7.3713 4.3908 -6.8212 16 6 7.5234 2.2869 -6.3899 17 7 7.7421 1.9251 -7.6280 18 14 7.6704 1.0351 -5.0112 19 1 6.3915 0.2920 -4.8791 20 1 8.7665 0.0827 -5.3221 21 1 7.9699 1.7356 -3.7365 22 6 5.7640 2.9852 -4.2061 23 6 3.4785 1.4314 -0.2397 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3517 1.5732 -2.0137 30 1 0.4115 2.5183 -0.8160 31 1 2.1859 4.1291 -0.5326 32 1 2.3060 3.7693 -2.2863 33 1 4.2356 1.4946 -2.7272 34 1 4.9350 4.8070 -1.4806 35 1 6.3435 6.4668 -2.6237 36 1 7.3960 5.9264 -4.7748 37 1 7.9808 1.0069 -7.8300 38 1 5.5983 2.0136 -4.6475 39 1 3.7896 0.5543 -0.8073 40 1 4.0100 1.4696 0.7111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313495539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:50 Heat of formation + Delta-G solvation = 24.255719 kcal Electronic energy + Delta-G solvation = -19355.189719 eV Core-core repulsion = 16555.024038 eV Total energy + Delta-G solvation = -2800.165681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50261 -37.79464 -35.04901 -33.40107 -32.12924 -30.23882 -29.36078 -28.72377 -26.38240 -25.09329 -23.31680 -21.64951 -20.87251 -20.62503 -19.48299 -17.34075 -16.58721 -15.94135 -15.88164 -15.21708 -14.77496 -14.56101 -14.06888 -13.64611 -13.24351 -13.05986 -12.73216 -12.64532 -12.40302 -12.36273 -11.88829 -11.67270 -11.46050 -11.34371 -11.26089 -11.11357 -10.89708 -10.74543 -10.51882 -10.29809 -9.75007 -9.65870 -9.22603 -8.93384 -8.56703 -7.53840 -6.88807 -6.48723 -4.44018 2.74715 2.86661 3.13666 3.28014 3.38103 3.75353 4.04524 4.17268 4.55033 4.61978 4.72102 4.92129 5.06850 5.21490 5.23590 5.28848 5.46773 5.52199 5.55787 5.64329 5.74506 5.86861 5.91252 5.98111 6.06225 6.11497 6.23218 6.35503 6.62919 6.70552 6.78586 6.86312 6.90974 7.11430 7.21317 7.53871 7.79015 7.83290 8.05104 8.31219 8.40892 8.51747 8.81774 8.90513 10.14391 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023893 B = 0.005396 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.595184 B = 5188.020048 C = 5928.325259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.040 3.960 3 N -0.517 5.517 4 C 0.036 3.964 5 C -0.139 4.139 6 C 0.150 3.850 7 H 0.089 0.911 8 N -0.754 5.754 9 C 0.240 3.760 10 C -0.301 4.301 11 C -0.054 4.054 12 C -0.245 4.245 13 C 0.124 3.876 14 C -0.451 4.451 15 H 0.090 0.910 16 C 0.085 3.915 17 N -0.814 5.814 18 Si 0.917 3.083 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.244 1.244 22 C -0.302 4.302 23 C 0.028 3.972 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.387 0.613 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.283 0.717 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -3.648 13.089 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 N -0.242 5.242 4 C -0.092 4.092 5 C -0.179 4.179 6 C 0.042 3.958 7 H 0.107 0.893 8 N -0.386 5.386 9 C 0.141 3.859 10 C -0.324 4.324 11 C -0.073 4.073 12 C -0.265 4.265 13 C 0.121 3.879 14 C -0.480 4.480 15 H 0.108 0.892 16 C -0.133 4.133 17 N -0.439 5.439 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.168 1.168 22 C -0.326 4.326 23 C -0.100 4.100 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.220 0.780 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.509 -3.497 13.527 17.483 hybrid contribution 0.205 -1.477 -0.556 1.591 sum -10.304 -4.973 12.971 17.296 Atomic orbital electron populations 1.21841 0.94873 1.01703 1.02514 1.22271 0.96035 0.89668 1.00805 1.64881 1.04241 1.11638 1.43451 1.23219 0.98670 0.94887 0.92382 1.23047 0.94836 0.97232 1.02783 1.21508 0.93762 0.95143 0.85350 0.89322 1.44706 1.55519 1.16218 1.22202 1.17506 0.89001 0.88624 0.90744 1.19924 1.14231 0.94992 1.03246 1.20410 0.95349 0.96572 0.94926 1.20888 1.08588 0.99024 0.98031 1.17456 0.88383 0.90995 0.91081 1.19488 1.34562 0.94104 0.99811 0.89243 1.26138 0.91718 0.99175 0.96233 1.69715 1.34490 1.19862 1.19823 0.86221 0.77152 0.79067 0.83072 1.20311 1.22319 1.16761 1.20452 1.11165 1.01964 0.99001 1.23196 0.89136 0.97586 1.00108 0.91843 0.92524 0.92329 0.94806 0.90752 0.93849 0.90224 0.90639 0.90058 0.77969 0.88875 0.88986 0.88592 0.90685 0.88542 0.93165 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.57 37.16 0.36 -0.94 16 2 C 0.04 0.41 5.75 -3.82 -0.02 0.39 16 3 N -0.52 -6.02 5.40 -230.46 -1.24 -7.26 16 4 C 0.04 0.42 5.11 -1.90 -0.01 0.41 16 5 C -0.14 -1.83 6.78 -24.87 -0.17 -2.00 16 6 C 0.15 2.14 3.04 -66.57 -0.20 1.94 16 7 H 0.09 1.32 6.40 -51.93 -0.33 0.99 16 8 N -0.75 -13.23 5.23 -50.90 -0.27 -13.50 16 9 C 0.24 5.18 6.64 -83.86 -0.56 4.62 16 10 C -0.30 -6.28 9.23 -39.09 -0.36 -6.64 16 11 C -0.05 -1.15 10.01 -39.70 -0.40 -1.55 16 12 C -0.24 -5.86 9.79 -38.83 -0.38 -6.24 16 13 C 0.12 3.24 5.10 -106.85 -0.54 2.69 16 14 C -0.45 -12.52 9.57 -37.74 -0.36 -12.88 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.09 2.30 5.40 -17.34 -0.09 2.20 16 17 N -0.81 -22.22 13.93 55.55 0.77 -21.44 16 18 Si 0.92 21.55 24.52 -169.99 -4.17 17.38 16 19 H -0.28 -6.28 6.71 56.52 0.38 -5.90 16 20 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.24 -5.94 6.87 56.52 0.39 -5.55 16 22 C -0.30 -7.38 7.01 -38.67 -0.27 -7.65 16 23 C 0.03 0.35 6.47 -2.76 -0.02 0.33 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.50 6.79 -51.93 -0.35 0.14 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.36 7.81 -51.93 -0.41 -0.05 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.53 8.00 -51.93 -0.42 0.12 16 30 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.39 6.57 8.34 -40.82 -0.34 6.23 16 34 H 0.09 1.72 6.19 -52.48 -0.32 1.40 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 38 H 0.10 2.38 4.75 -52.49 -0.25 2.13 16 39 H 0.05 0.64 7.06 -51.93 -0.37 0.27 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -27.99 313.46 -9.37 -37.36 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.16 Total: 8.06 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.03 Total: -25.31 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.74 Total: -42.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.17 Total: 17.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.99 -9.37 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.613 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds