Wall clock time and date at job start Mon Mar 30 2020 06:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47326 * 2 1 4 4 C 1.48531 * 111.00109 * 307.40113 * 3 2 1 5 5 C 1.54931 * 103.22705 * 200.27785 * 4 3 2 6 6 C 1.54596 * 102.92151 * 37.40970 * 5 4 3 7 7 H 1.09001 * 110.39511 * 219.08429 * 6 5 4 8 8 N 1.46503 * 110.30658 * 96.96080 * 6 5 4 9 9 C 1.39683 * 119.99825 * 89.28642 * 8 6 5 10 10 C 1.39334 * 119.95671 * 359.97438 * 9 8 6 11 11 C 1.38478 * 120.42737 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32681 * 359.97438 * 11 10 9 13 13 C 1.40756 * 119.89334 * 0.02562 * 12 11 10 14 14 C 1.41402 * 120.20935 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99988 * 330.01854 * 14 13 12 16 16 C 1.39931 * 119.99742 * 150.30308 * 14 13 12 17 17 N 1.30832 * 119.99748 * 161.76640 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 341.76044 * 16 14 13 19 19 H 1.48501 * 109.46771 * 95.40706 * 18 16 14 20 20 H 1.48499 * 109.47313 * 215.40508 * 18 16 14 21 21 H 1.48504 * 109.47098 * 335.41138 * 18 16 14 22 22 C 1.38287 * 119.94997 * 180.30082 * 9 8 6 23 23 C 1.47899 * 111.00048 * 189.99867 * 3 2 1 24 24 H 1.09002 * 109.46913 * 300.00145 * 1 2 3 25 25 H 1.09000 * 109.46866 * 59.99330 * 1 2 3 26 26 H 1.08995 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47043 * 240.00387 * 2 1 3 28 28 H 1.08994 * 109.47079 * 120.00290 * 2 1 3 29 29 H 1.08998 * 110.66506 * 318.71181 * 4 3 2 30 30 H 1.08997 * 110.67048 * 81.67554 * 4 3 2 31 31 H 1.09000 * 110.72649 * 279.05250 * 5 4 3 32 32 H 1.09006 * 110.72670 * 155.77072 * 5 4 3 33 33 H 0.96998 * 119.99740 * 269.28168 * 8 6 5 34 34 H 1.08003 * 119.78318 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83620 * 180.02562 * 11 10 9 36 36 H 1.07992 * 120.05692 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00021 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.16408 * 359.97438 * 22 9 8 39 39 H 1.09005 * 109.91689 * 26.49502 * 23 3 2 40 40 H 1.08998 * 109.91828 * 265.19662 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4032 2.1676 -1.1016 5 6 2.3781 3.3585 -1.2792 6 6 3.7624 2.7090 -1.0511 7 1 4.4085 3.3805 -0.4856 8 7 4.3822 2.3693 -2.3343 9 6 5.1844 3.3048 -2.9919 10 6 5.3941 4.5610 -2.4268 11 6 6.1871 5.4961 -3.0705 12 6 6.7780 5.1941 -4.2768 13 6 6.5754 3.9291 -4.8600 14 6 7.1795 3.6116 -6.0984 15 1 7.3713 4.3908 -6.8212 16 6 7.5234 2.2869 -6.3899 17 7 7.7421 1.9251 -7.6280 18 14 7.6704 1.0351 -5.0112 19 1 6.3915 0.2920 -4.8791 20 1 8.7665 0.0827 -5.3221 21 1 7.9699 1.7356 -3.7365 22 6 5.7640 2.9852 -4.2061 23 6 3.4785 1.4314 -0.2397 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3517 1.5732 -2.0137 30 1 0.4115 2.5183 -0.8160 31 1 2.1859 4.1291 -0.5326 32 1 2.3060 3.7693 -2.2863 33 1 4.2356 1.4946 -2.7272 34 1 4.9350 4.8070 -1.4806 35 1 6.3435 6.4668 -2.6237 36 1 7.3960 5.9264 -4.7748 37 1 7.9808 1.0069 -7.8300 38 1 5.5983 2.0136 -4.6475 39 1 3.7896 0.5543 -0.8073 40 1 4.0100 1.4696 0.7111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313495539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:49 Heat of formation + Delta-G solvation = 6.214052 kcal Electronic energy + Delta-G solvation = -19355.972064 eV Core-core repulsion = 16555.024038 eV Total energy + Delta-G solvation = -2800.948026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65904 -39.38690 -36.47009 -35.21583 -33.31008 -32.11433 -30.32535 -30.03645 -27.72162 -26.98358 -24.21932 -23.32754 -22.33747 -21.61152 -20.95978 -19.18988 -18.11230 -17.13438 -17.07664 -16.69984 -16.35246 -15.87332 -15.37485 -14.98127 -14.80361 -14.36051 -14.16509 -14.11511 -13.77931 -13.61087 -13.41295 -12.93418 -12.65889 -12.50736 -12.46439 -12.32943 -12.27685 -12.09492 -11.90122 -11.81040 -11.61215 -11.46089 -11.01404 -10.62316 -9.47388 -9.41754 -8.88904 -8.12805 -6.49989 0.89116 1.05219 1.22886 1.42937 1.48469 2.13177 2.54564 2.67301 3.08410 3.54894 3.62007 3.78545 4.06192 4.19513 4.28530 4.32094 4.37334 4.48040 4.55816 4.59516 4.65745 4.82317 4.85768 4.87245 4.94595 4.98061 5.04066 5.08055 5.15282 5.17763 5.27508 5.29737 5.44342 5.71399 5.82207 5.95941 6.01681 6.02921 6.19635 6.34196 6.66591 6.84522 6.87871 7.02459 8.20377 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023893 B = 0.005396 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.595184 B = 5188.020048 C = 5928.325259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 N -0.518 5.518 4 C 0.040 3.960 5 C -0.135 4.135 6 C 0.144 3.856 7 H 0.090 0.910 8 N -0.747 5.747 9 C 0.244 3.756 10 C -0.288 4.288 11 C -0.047 4.047 12 C -0.270 4.270 13 C 0.105 3.895 14 C -0.490 4.490 15 H 0.054 0.946 16 C 0.049 3.951 17 N -0.855 5.855 18 Si 0.974 3.026 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.257 1.257 22 C -0.318 4.318 23 C 0.033 3.967 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.390 0.610 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.291 0.709 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -4.191 16.529 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 N -0.243 5.243 4 C -0.087 4.087 5 C -0.174 4.174 6 C 0.038 3.962 7 H 0.108 0.892 8 N -0.377 5.377 9 C 0.142 3.858 10 C -0.311 4.311 11 C -0.065 4.065 12 C -0.290 4.290 13 C 0.102 3.898 14 C -0.520 4.520 15 H 0.072 0.928 16 C -0.164 4.164 17 N -0.482 5.482 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.181 1.181 22 C -0.342 4.342 23 C -0.095 4.095 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.199 -4.055 16.986 21.302 hybrid contribution 0.579 -1.190 -1.450 1.963 sum -11.620 -5.245 15.536 20.097 Atomic orbital electron populations 1.21811 0.93721 1.02593 1.02391 1.22359 0.97028 0.88723 1.00945 1.64941 1.03655 1.12612 1.43077 1.23194 0.99062 0.94242 0.92220 1.22982 0.94311 0.98008 1.02148 1.21743 0.94137 0.96469 0.83851 0.89167 1.44823 1.54390 1.15578 1.22948 1.17595 0.88548 0.89679 0.89947 1.20367 1.12652 0.94127 1.03913 1.20803 0.93881 0.98271 0.93566 1.21043 1.09932 0.98543 0.99529 1.17606 0.88807 0.92477 0.90869 1.19499 1.37631 0.94125 1.00745 0.92788 1.26784 0.91182 1.00368 0.98115 1.69743 1.36490 1.20861 1.21131 0.85355 0.77941 0.77135 0.79709 1.18933 1.20854 1.18072 1.20480 1.11839 1.01519 1.00326 1.23153 0.89916 0.96286 1.00191 0.91651 0.92880 0.91043 0.95385 0.89891 0.94700 0.88801 0.89145 0.91872 0.77646 0.85581 0.85271 0.88782 0.89823 0.89247 0.93447 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.57 71.98 0.69 -1.41 16 2 C 0.04 0.64 5.75 86.30 0.50 1.14 16 3 N -0.52 -10.34 5.40 -883.05 -4.76 -15.10 16 4 C 0.04 0.82 5.11 86.65 0.44 1.27 16 5 C -0.13 -3.10 6.78 31.80 0.22 -2.89 16 6 C 0.14 3.63 3.04 45.87 0.14 3.77 16 7 H 0.09 2.29 6.40 -2.39 -0.02 2.28 16 8 N -0.75 -24.26 5.23 -314.96 -1.65 -25.91 16 9 C 0.24 9.99 6.64 38.17 0.25 10.25 16 10 C -0.29 -11.02 9.23 22.59 0.21 -10.81 16 11 C -0.05 -1.88 10.01 22.20 0.22 -1.65 16 12 C -0.27 -12.95 9.79 22.75 0.22 -12.73 16 13 C 0.11 5.61 5.10 -21.31 -0.11 5.50 16 14 C -0.49 -28.76 9.57 23.46 0.22 -28.53 16 15 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 16 C 0.05 2.74 5.40 85.25 0.46 3.20 16 17 N -0.86 -48.66 13.93 21.82 0.30 -48.35 16 18 Si 0.97 45.10 24.52 68.60 1.68 46.79 16 19 H -0.26 -11.49 6.71 99.48 0.67 -10.82 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -12.26 6.87 99.48 0.68 -11.58 16 22 C -0.32 -15.43 7.01 22.86 0.16 -15.27 16 23 C 0.03 0.71 6.47 86.45 0.56 1.27 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.79 6.79 -2.39 -0.02 0.78 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.03 0.52 7.81 -2.39 -0.02 0.50 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 0.78 8.00 -2.39 -0.02 0.76 16 30 H 0.09 1.67 7.65 -2.39 -0.02 1.65 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.71 8.05 -2.38 -0.02 1.69 16 33 H 0.39 12.38 8.34 -92.71 -0.77 11.61 16 34 H 0.13 4.03 6.19 -2.91 -0.02 4.01 16 35 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 38 H 0.09 4.40 4.75 -2.91 -0.01 4.39 16 39 H 0.05 1.06 7.06 -2.38 -0.02 1.04 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -61.87 313.46 -0.05 -61.92 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.19 Total: 27.56 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 4.19 Total: -46.89 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -6.11 Total: -89.37 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.68 Total: 46.79 kcal Total: -61.87 -0.05 -61.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.132 kcal (2) G-P(sol) polarization free energy of solvation -61.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds