Wall clock time and date at job start Mon Mar 30 2020 06:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47427 * 2 1 4 4 C 1.48564 * 110.99750 * 290.12635 * 3 2 1 5 5 C 1.54371 * 104.59548 * 200.96033 * 4 3 2 6 6 C 1.54266 * 105.06235 * 23.84961 * 5 4 3 7 7 H 1.09001 * 110.32265 * 118.99870 * 6 5 4 8 8 N 1.46495 * 110.32646 * 241.10629 * 6 5 4 9 9 C 1.39682 * 119.99790 * 273.54976 * 8 6 5 10 10 C 1.39339 * 119.95320 * 0.02562 * 9 8 6 11 11 C 1.38473 * 120.42170 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32975 * 0.02562 * 11 10 9 13 13 C 1.40746 * 119.89120 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.20804 * 180.27461 * 13 12 11 15 15 H 1.07994 * 119.99688 * 335.05093 * 14 13 12 16 16 C 1.39929 * 120.00224 * 155.04630 * 14 13 12 17 17 N 1.30836 * 119.99801 * 342.19115 * 16 14 13 18 18 Si 1.86793 * 120.00175 * 162.18696 * 16 14 13 19 19 H 1.48497 * 109.47309 * 90.00018 * 18 16 14 20 20 H 1.48494 * 109.47474 * 210.00227 * 18 16 14 21 21 H 1.48508 * 109.47348 * 330.00292 * 18 16 14 22 22 C 1.38283 * 119.95139 * 180.02562 * 9 8 6 23 23 C 1.48561 * 111.00303 * 174.70710 * 3 2 1 24 24 H 1.08996 * 109.47151 * 59.99846 * 1 2 3 25 25 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46507 * 300.00351 * 1 2 3 27 27 H 1.08997 * 109.47325 * 239.99382 * 2 1 3 28 28 H 1.09004 * 109.46939 * 119.99868 * 2 1 3 29 29 H 1.08998 * 110.41367 * 82.17583 * 4 3 2 30 30 H 1.09003 * 110.50712 * 319.78806 * 4 3 2 31 31 H 1.09004 * 110.32634 * 264.95683 * 5 4 3 32 32 H 1.08999 * 110.32955 * 142.74784 * 5 4 3 33 33 H 0.96999 * 119.99870 * 93.54257 * 8 6 5 34 34 H 1.07998 * 119.78738 * 0.02562 * 10 9 8 35 35 H 1.07998 * 119.83481 * 180.02562 * 11 10 9 36 36 H 1.07997 * 120.05601 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99895 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.15980 * 0.03909 * 22 9 8 39 39 H 1.08997 * 110.40901 * 40.25860 * 23 3 2 40 40 H 1.08999 * 110.40826 * 277.81586 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.7473 2.0460 -1.3023 5 6 2.7454 3.2223 -1.3578 6 6 3.8980 2.8149 -0.4169 7 1 4.8345 2.7512 -0.9710 8 7 4.0221 3.7761 0.6816 9 6 4.7942 4.9285 0.5174 10 6 5.4455 5.1630 -0.6919 11 6 6.2130 6.3024 -0.8655 12 6 6.3414 7.2166 0.1562 13 6 5.6902 6.9927 1.3837 14 6 5.8127 7.9299 2.4354 15 1 6.6742 8.5796 2.4821 16 6 4.8178 8.0157 3.4156 17 7 3.6343 7.5043 3.1930 18 14 5.1794 8.8603 5.0420 19 1 4.8494 10.3042 4.9341 20 1 4.3571 8.2435 6.1137 21 1 6.6191 8.7049 5.3713 22 6 4.9111 5.8349 1.5551 23 6 3.4993 1.4266 0.1279 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7223 2.4152 -1.3341 30 1 1.9275 1.3553 -2.1261 31 1 2.2720 4.1376 -1.0023 32 1 3.1159 3.3569 -2.3740 33 1 3.5680 3.6123 1.5230 34 1 5.3504 4.4520 -1.4992 35 1 6.7133 6.4750 -1.8069 36 1 6.9407 8.1040 0.0158 37 1 2.9445 7.5641 3.8723 38 1 4.4072 5.6539 2.4931 39 1 3.9549 0.6380 -0.4709 40 1 3.7933 1.3295 1.1730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313495540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:53 Heat of formation + Delta-G solvation = 23.230370 kcal Electronic energy + Delta-G solvation = -19188.331711 eV Core-core repulsion = 16388.121567 eV Total energy + Delta-G solvation = -2800.210143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.25099 -37.45320 -34.84910 -33.34486 -31.97772 -29.41700 -29.11142 -28.59193 -26.09887 -25.13236 -23.07889 -21.29902 -20.63157 -20.49960 -19.48221 -17.23192 -16.23144 -15.80749 -15.41865 -14.77084 -14.70800 -14.46401 -14.19579 -13.17384 -13.09780 -12.92896 -12.58342 -12.46341 -12.20532 -12.08071 -11.61467 -11.49869 -11.32272 -11.17502 -11.04359 -10.95935 -10.79628 -10.65783 -10.51943 -10.29118 -9.56105 -9.38195 -9.19318 -8.72954 -8.47765 -7.24878 -6.67017 -6.08585 -4.25348 2.91763 3.13347 3.18230 3.28936 3.38863 3.96198 4.02442 4.35095 4.69789 4.77314 4.82494 5.04814 5.19908 5.30853 5.35217 5.42785 5.58874 5.61715 5.78117 5.81418 5.85515 5.89836 6.00451 6.09196 6.16431 6.33807 6.48538 6.64425 6.83206 6.95907 7.01642 7.18202 7.20154 7.45086 7.51854 7.88839 8.02384 8.17881 8.23878 8.55915 8.81116 8.91097 9.07429 9.18932 10.31613 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.004766 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.544538 B = 5873.756808 C = 6734.723084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.039 3.961 3 N -0.509 5.509 4 C 0.035 3.965 5 C -0.142 4.142 6 C 0.162 3.838 7 H 0.079 0.921 8 N -0.747 5.747 9 C 0.217 3.783 10 C -0.300 4.300 11 C -0.067 4.067 12 C -0.259 4.259 13 C 0.140 3.860 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.079 3.921 17 N -0.792 5.792 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.231 4.231 23 C 0.025 3.975 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.392 0.608 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.277 0.723 38 H 0.116 0.884 39 H 0.049 0.951 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -12.260 -4.827 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 N -0.233 5.233 4 C -0.093 4.093 5 C -0.181 4.181 6 C 0.054 3.946 7 H 0.097 0.903 8 N -0.380 5.380 9 C 0.119 3.881 10 C -0.323 4.323 11 C -0.086 4.086 12 C -0.279 4.279 13 C 0.136 3.864 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.417 5.417 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.254 4.254 23 C -0.104 4.104 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.227 0.773 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.961 -12.105 -4.442 13.816 hybrid contribution 0.180 -0.117 0.289 0.360 sum -4.781 -12.222 -4.152 13.765 Atomic orbital electron populations 1.21737 0.94831 1.01222 1.02613 1.22230 0.96367 0.89714 1.00584 1.65423 1.11343 1.15211 1.31353 1.23117 1.00381 0.95955 0.89880 1.22947 0.96556 0.98769 0.99864 1.21278 0.97159 0.87306 0.88895 0.90323 1.44479 1.56370 1.22030 1.15098 1.17654 0.90382 0.85889 0.94225 1.19874 1.12662 1.02401 0.97314 1.20274 0.97360 0.94222 0.96696 1.20850 1.11237 1.00962 0.94885 1.17311 0.88135 0.90274 0.90645 1.19534 1.05670 1.17539 1.06891 0.90680 1.25861 0.94126 0.94407 0.99491 1.69872 1.02080 1.36078 1.33680 0.86420 0.79757 0.79686 0.81442 1.19645 1.20248 1.18564 1.20712 1.10563 0.95769 0.98399 1.23408 0.88163 0.96798 1.01997 0.92801 0.92577 0.91775 0.94974 0.90926 0.90413 0.94290 0.89912 0.91536 0.77344 0.89736 0.89784 0.89503 0.91208 0.86608 0.93308 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.97 37.16 0.37 -1.00 16 2 C 0.04 0.41 5.53 -3.82 -0.02 0.39 16 3 N -0.51 -6.52 5.37 -229.97 -1.24 -7.76 16 4 C 0.03 0.43 5.73 -2.18 -0.01 0.42 16 5 C -0.14 -2.08 6.79 -25.35 -0.17 -2.25 16 6 C 0.16 2.52 3.01 -66.55 -0.20 2.32 16 7 H 0.08 1.26 6.56 -51.93 -0.34 0.92 16 8 N -0.75 -14.37 5.17 -50.88 -0.26 -14.64 16 9 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16 10 C -0.30 -6.82 9.23 -39.09 -0.36 -7.18 16 11 C -0.07 -1.56 10.01 -39.69 -0.40 -1.95 16 12 C -0.26 -6.63 9.79 -38.83 -0.38 -7.01 16 13 C 0.14 3.84 5.57 -106.85 -0.60 3.25 16 14 C -0.47 -12.78 9.05 -37.74 -0.34 -13.12 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 16 C 0.08 2.03 5.14 -17.34 -0.09 1.94 16 17 N -0.79 -21.01 10.97 55.55 0.61 -20.40 16 18 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 22 C -0.23 -6.09 8.52 -38.67 -0.33 -6.42 16 23 C 0.02 0.32 6.10 -2.18 -0.01 0.31 16 24 H 0.05 0.50 7.26 -51.93 -0.38 0.13 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.31 7.88 -51.93 -0.41 -0.10 16 28 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 30 H 0.04 0.43 7.83 -51.93 -0.41 0.03 16 31 H 0.08 1.44 7.95 -51.93 -0.41 1.02 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.39 7.51 8.56 -40.82 -0.35 7.16 16 34 H 0.08 1.72 6.25 -52.49 -0.33 1.40 16 35 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 38 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 39 H 0.05 0.56 8.00 -51.93 -0.42 0.15 16 40 H 0.09 1.16 7.99 -51.93 -0.41 0.74 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -28.11 320.60 -10.46 -38.57 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.27 Total: 11.06 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.10 Total: -25.79 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.89 Total: -42.79 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.11 -10.46 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.797 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds