Wall clock time and date at job start Mon Mar 30 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.53683 * 2 1 4 4 C 1.53036 * 109.50615 * 239.89869 * 2 1 3 5 5 N 1.46846 * 109.52456 * 180.88329 * 4 2 1 6 6 C 1.46841 * 111.20374 * 61.73701 * 5 4 2 7 7 C 1.53036 * 109.52595 * 298.26600 * 6 5 4 8 8 C 1.53116 * 109.27963 * 59.17147 * 7 6 5 9 9 H 1.08996 * 109.57437 * 62.29001 * 8 7 6 10 10 N 1.46504 * 109.52232 * 182.44719 * 8 7 6 11 11 C 1.39689 * 119.99677 * 274.68524 * 10 8 7 12 12 C 1.39333 * 119.95115 * 0.02562 * 11 10 8 13 13 C 1.38487 * 120.42423 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32226 * 359.73598 * 13 12 11 15 15 C 1.40752 * 119.89531 * 0.51986 * 14 13 12 16 16 C 1.41403 * 120.21192 * 179.76311 * 15 14 13 17 17 H 1.07999 * 119.99866 * 335.25841 * 16 15 14 18 18 C 1.39926 * 120.00420 * 154.98561 * 16 15 14 19 19 N 1.30833 * 119.99827 * 342.55083 * 18 16 15 20 20 Si 1.86804 * 120.00247 * 162.55304 * 18 16 15 21 21 H 1.48497 * 109.46952 * 59.99822 * 20 18 16 22 22 H 1.48498 * 109.46815 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47080 * 299.99855 * 20 18 16 24 24 C 1.38276 * 119.94999 * 180.02562 * 11 10 8 25 25 H 1.08992 * 109.47616 * 299.90533 * 1 2 3 26 26 H 1.09000 * 109.47200 * 59.91120 * 1 2 3 27 27 H 1.09002 * 109.47265 * 179.90151 * 1 2 3 28 28 H 1.09006 * 109.46301 * 300.89162 * 4 2 1 29 29 H 1.08997 * 109.46267 * 60.87265 * 4 2 1 30 30 H 1.00901 * 111.00340 * 185.84408 * 5 4 2 31 31 H 1.09007 * 109.46253 * 58.27469 * 6 5 4 32 32 H 1.08996 * 109.46957 * 178.25416 * 6 5 4 33 33 H 1.09002 * 109.50073 * 299.23298 * 7 6 5 34 34 H 1.08996 * 109.50833 * 179.12113 * 7 6 5 35 35 H 0.97000 * 120.00354 * 94.68181 * 10 8 7 36 36 H 1.08002 * 119.79190 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.83629 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.05325 * 180.27940 * 14 13 12 39 39 H 0.97002 * 119.99943 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.16382 * 0.04223 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5093 -0.7422 -1.2377 6 6 4.0230 -1.4729 -0.0722 7 6 3.5711 -0.7719 1.2109 8 6 2.0412 -0.7238 1.2488 9 1 1.6443 -1.7387 1.2697 10 7 1.6036 -0.0022 2.4463 11 6 1.4720 -0.6797 3.6608 12 6 1.7577 -2.0415 3.7322 13 6 1.6311 -2.7227 4.9313 14 6 1.2263 -2.0597 6.0681 15 6 0.9289 -0.6852 6.0102 16 6 0.5078 0.0013 7.1724 17 1 0.0347 -0.5406 7.9780 18 6 0.7092 1.3817 7.2814 19 7 1.5682 1.9813 6.4976 20 14 -0.2484 2.3684 8.5459 21 1 0.0518 1.8537 9.9060 22 1 0.1454 3.7977 8.4599 23 1 -1.7030 2.2382 8.2772 24 6 1.0584 0.0022 4.7904 25 1 -0.3634 0.5123 0.8907 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3634 -1.0277 -0.0018 28 1 1.6648 -1.7466 -1.2543 29 1 1.6907 -0.2023 -2.1389 30 1 3.8720 -1.1294 -2.0960 31 1 3.6375 -2.4925 -0.0840 32 1 5.1121 -1.4960 -0.1091 33 1 3.9677 0.2433 1.2299 34 1 3.9394 -1.3232 2.0759 35 1 1.4052 0.9460 2.3959 36 1 2.0808 -2.5691 2.8470 37 1 1.8546 -3.7784 4.9757 38 1 1.1334 -2.5943 7.0018 39 1 1.7080 2.9382 6.5733 40 1 0.8359 1.0577 4.7361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313499393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:14 Heat of formation + Delta-G solvation = 9.141021 kcal Electronic energy + Delta-G solvation = -19550.071284 eV Core-core repulsion = 16749.250181 eV Total energy + Delta-G solvation = -2800.821103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.23063 -37.36231 -34.70786 -33.36849 -32.45640 -30.53867 -29.38565 -27.34949 -26.11369 -25.14005 -22.97390 -21.75981 -21.02326 -19.84909 -19.40165 -17.19838 -16.42801 -15.75524 -15.06020 -14.85673 -14.76018 -14.27211 -13.98980 -13.66187 -13.30756 -12.79513 -12.59137 -12.42139 -12.12944 -11.91057 -11.87697 -11.58398 -11.32062 -11.07872 -10.98264 -10.79667 -10.65800 -10.49349 -10.30823 -10.10148 -9.55648 -9.39196 -9.18239 -8.69659 -8.52263 -7.26197 -6.68479 -6.09704 -4.27315 2.91920 3.11305 3.14761 3.27560 3.38412 4.00783 4.14840 4.30570 4.75988 4.79894 5.03862 5.06489 5.31171 5.40135 5.49990 5.66606 5.69255 5.74199 5.80416 5.87449 5.99872 6.11811 6.19601 6.31528 6.32384 6.41953 6.54816 6.69016 6.93517 6.97603 7.16289 7.18350 7.29888 7.43408 7.49805 7.86886 8.00749 8.16197 8.22067 8.54174 8.77929 8.89269 9.05759 9.17210 10.30025 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.004992 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.686094 B = 5607.329917 C = 6031.731539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.078 0.922 4 C 0.067 3.933 5 N -0.692 5.692 6 C 0.060 3.940 7 C -0.133 4.133 8 C 0.168 3.832 9 H 0.069 0.931 10 N -0.752 5.752 11 C 0.219 3.781 12 C -0.300 4.300 13 C -0.067 4.067 14 C -0.259 4.259 15 C 0.140 3.860 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.793 5.793 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.232 4.232 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.339 0.661 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.388 0.612 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.277 0.723 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -2.160 -12.890 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.063 4.063 5 N -0.322 5.322 6 C -0.070 4.070 7 C -0.173 4.173 8 C 0.061 3.939 9 H 0.087 0.913 10 N -0.384 5.384 11 C 0.121 3.879 12 C -0.323 4.323 13 C -0.086 4.086 14 C -0.279 4.279 15 C 0.136 3.864 16 C -0.496 4.496 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.419 5.419 20 Si 0.729 3.271 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.256 4.256 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.222 0.778 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.321 -1.467 -12.723 12.875 hybrid contribution -0.497 -0.084 0.324 0.599 sum 0.825 -1.551 -12.399 12.523 Atomic orbital electron populations 1.21752 0.94616 1.01923 1.01817 1.21412 0.95646 1.00519 0.93967 0.90360 1.21927 0.87544 0.98634 0.98170 1.60272 1.08125 1.58569 1.05279 1.21926 0.99456 0.94690 0.90884 1.22131 0.97318 1.01633 0.96204 1.20656 0.92622 0.96048 0.84565 0.91345 1.44460 1.77418 1.10391 1.06119 1.17632 0.94390 0.91023 0.84902 1.19890 1.21676 0.93295 0.97400 1.20278 0.98464 0.96696 0.93118 1.20852 1.14372 0.96103 0.96602 1.17312 0.86454 0.90587 0.92005 1.19515 1.35348 0.92256 1.02517 0.90703 1.25858 0.93416 0.98341 0.96253 1.69862 1.25827 1.11405 1.34767 0.86451 0.81065 0.78336 0.81295 1.19123 1.20491 1.18946 1.20722 1.14005 1.00139 0.90697 0.91660 0.93099 0.92893 0.95192 0.90861 0.84390 0.95342 0.90971 0.91309 0.90859 0.77822 0.89731 0.89805 0.89508 0.91176 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.06 37.15 0.34 -1.45 16 2 C -0.10 -1.25 2.44 -90.54 -0.22 -1.47 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.07 0.74 5.83 -3.83 -0.02 0.72 16 5 N -0.69 -7.71 6.84 -113.82 -0.78 -8.49 16 6 C 0.06 0.73 6.55 -3.84 -0.03 0.71 16 7 C -0.13 -2.02 5.62 -26.65 -0.15 -2.17 16 8 C 0.17 2.64 1.63 -67.81 -0.11 2.53 16 9 H 0.07 1.16 6.47 -51.93 -0.34 0.83 16 10 N -0.75 -14.27 4.62 -52.10 -0.24 -14.51 16 11 C 0.22 5.10 6.63 -83.86 -0.56 4.54 16 12 C -0.30 -6.84 8.91 -39.08 -0.35 -7.18 16 13 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 14 C -0.26 -6.63 9.79 -38.83 -0.38 -7.01 16 15 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 16 C -0.47 -12.74 9.05 -37.75 -0.34 -13.08 16 17 H 0.07 1.97 7.91 -52.49 -0.41 1.56 16 18 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 19 N -0.79 -20.92 10.95 55.55 0.61 -20.31 16 20 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.23 -6.09 8.53 -38.67 -0.33 -6.42 16 25 H 0.06 0.91 7.63 -51.93 -0.40 0.52 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.34 2.99 8.90 -39.29 -0.35 2.64 16 31 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.24 7.73 -51.93 -0.40 0.84 16 35 H 0.39 7.17 8.54 -40.82 -0.35 6.82 16 36 H 0.08 1.75 6.07 -52.49 -0.32 1.43 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.12 3.15 6.17 -52.48 -0.32 2.82 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -28.06 317.06 -10.14 -38.20 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.25 Total: 13.32 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -3.23 Total: -27.06 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.41 Total: -43.31 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.06 -10.14 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.343 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds