Wall clock time and date at job start Mon Mar 30 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.53683 * 2 1 4 4 C 1.53036 * 109.50615 * 239.89869 * 2 1 3 5 5 N 1.46846 * 109.52456 * 180.88329 * 4 2 1 6 6 C 1.46841 * 111.20374 * 61.73701 * 5 4 2 7 7 C 1.53036 * 109.52595 * 298.26600 * 6 5 4 8 8 C 1.53116 * 109.27963 * 59.17147 * 7 6 5 9 9 H 1.08996 * 109.57437 * 62.29001 * 8 7 6 10 10 N 1.46504 * 109.52232 * 182.44719 * 8 7 6 11 11 C 1.39689 * 119.99677 * 274.68524 * 10 8 7 12 12 C 1.39333 * 119.95115 * 0.02562 * 11 10 8 13 13 C 1.38487 * 120.42423 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32226 * 359.73598 * 13 12 11 15 15 C 1.40752 * 119.89531 * 0.51986 * 14 13 12 16 16 C 1.41403 * 120.21192 * 179.76311 * 15 14 13 17 17 H 1.07999 * 119.99866 * 335.25841 * 16 15 14 18 18 C 1.39926 * 120.00420 * 154.98561 * 16 15 14 19 19 N 1.30833 * 119.99827 * 342.55083 * 18 16 15 20 20 Si 1.86804 * 120.00247 * 162.55304 * 18 16 15 21 21 H 1.48497 * 109.46952 * 59.99822 * 20 18 16 22 22 H 1.48498 * 109.46815 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47080 * 299.99855 * 20 18 16 24 24 C 1.38276 * 119.94999 * 180.02562 * 11 10 8 25 25 H 1.08992 * 109.47616 * 299.90533 * 1 2 3 26 26 H 1.09000 * 109.47200 * 59.91120 * 1 2 3 27 27 H 1.09002 * 109.47265 * 179.90151 * 1 2 3 28 28 H 1.09006 * 109.46301 * 300.89162 * 4 2 1 29 29 H 1.08997 * 109.46267 * 60.87265 * 4 2 1 30 30 H 1.00901 * 111.00340 * 185.84408 * 5 4 2 31 31 H 1.09007 * 109.46253 * 58.27469 * 6 5 4 32 32 H 1.08996 * 109.46957 * 178.25416 * 6 5 4 33 33 H 1.09002 * 109.50073 * 299.23298 * 7 6 5 34 34 H 1.08996 * 109.50833 * 179.12113 * 7 6 5 35 35 H 0.97000 * 120.00354 * 94.68181 * 10 8 7 36 36 H 1.08002 * 119.79190 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.83629 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.05325 * 180.27940 * 14 13 12 39 39 H 0.97002 * 119.99943 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.16382 * 0.04223 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5093 -0.7422 -1.2377 6 6 4.0230 -1.4729 -0.0722 7 6 3.5711 -0.7719 1.2109 8 6 2.0412 -0.7238 1.2488 9 1 1.6443 -1.7387 1.2697 10 7 1.6036 -0.0022 2.4463 11 6 1.4720 -0.6797 3.6608 12 6 1.7577 -2.0415 3.7322 13 6 1.6311 -2.7227 4.9313 14 6 1.2263 -2.0597 6.0681 15 6 0.9289 -0.6852 6.0102 16 6 0.5078 0.0013 7.1724 17 1 0.0347 -0.5406 7.9780 18 6 0.7092 1.3817 7.2814 19 7 1.5682 1.9813 6.4976 20 14 -0.2484 2.3684 8.5459 21 1 0.0518 1.8537 9.9060 22 1 0.1454 3.7977 8.4599 23 1 -1.7030 2.2382 8.2772 24 6 1.0584 0.0022 4.7904 25 1 -0.3634 0.5123 0.8907 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3634 -1.0277 -0.0018 28 1 1.6648 -1.7466 -1.2543 29 1 1.6907 -0.2023 -2.1389 30 1 3.8720 -1.1294 -2.0960 31 1 3.6375 -2.4925 -0.0840 32 1 5.1121 -1.4960 -0.1091 33 1 3.9677 0.2433 1.2299 34 1 3.9394 -1.3232 2.0759 35 1 1.4052 0.9460 2.3959 36 1 2.0808 -2.5691 2.8470 37 1 1.8546 -3.7784 4.9757 38 1 1.1334 -2.5943 7.0018 39 1 1.7080 2.9382 6.5733 40 1 0.8359 1.0577 4.7361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313499393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:13 Heat of formation + Delta-G solvation = -7.969066 kcal Electronic energy + Delta-G solvation = -19550.813233 eV Core-core repulsion = 16749.250181 eV Total energy + Delta-G solvation = -2801.563052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51197 -39.05115 -36.24541 -35.10810 -33.66436 -31.88635 -31.33163 -28.95244 -27.26993 -27.03321 -24.22212 -23.11864 -22.57042 -21.62235 -20.64981 -19.07947 -17.64815 -17.34650 -16.62790 -16.47021 -16.08270 -15.76094 -15.13663 -14.92793 -14.79752 -14.40929 -14.04748 -13.90886 -13.73634 -13.51994 -13.02116 -12.91591 -12.79197 -12.73987 -12.50117 -12.28857 -12.05904 -11.83576 -11.80182 -11.53972 -11.25183 -11.21377 -11.02931 -10.42294 -9.40098 -9.24069 -8.61121 -7.87662 -6.31844 1.09955 1.34662 1.38167 1.49495 1.59867 2.23128 2.77884 2.84764 3.27734 3.71264 3.84157 3.99328 4.00922 4.20658 4.40508 4.46187 4.50194 4.54234 4.68678 4.73177 4.79974 4.85409 4.92876 4.99386 5.01517 5.12029 5.19280 5.22121 5.30116 5.32461 5.39382 5.49590 5.62998 5.97251 6.04332 6.11674 6.22328 6.28642 6.55038 6.59490 6.95656 7.06618 7.08012 7.26827 8.38946 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.004992 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.686094 B = 5607.329917 C = 6031.731539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.072 0.928 4 C 0.071 3.929 5 N -0.696 5.696 6 C 0.067 3.933 7 C -0.129 4.129 8 C 0.165 3.835 9 H 0.061 0.939 10 N -0.745 5.745 11 C 0.226 3.774 12 C -0.301 4.301 13 C -0.063 4.063 14 C -0.287 4.287 15 C 0.109 3.891 16 C -0.506 4.506 17 H 0.071 0.929 18 C 0.038 3.962 19 N -0.823 5.823 20 Si 0.979 3.021 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.260 4.260 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.357 0.643 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.389 0.611 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.285 0.715 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -2.351 -14.772 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.059 4.059 5 N -0.329 5.329 6 C -0.063 4.063 7 C -0.169 4.169 8 C 0.060 3.940 9 H 0.079 0.921 10 N -0.375 5.375 11 C 0.125 3.875 12 C -0.323 4.323 13 C -0.082 4.082 14 C -0.308 4.308 15 C 0.106 3.894 16 C -0.536 4.536 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.449 5.449 20 Si 0.800 3.200 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.285 4.285 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.176 0.824 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.223 0.777 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.409 -1.668 -14.660 14.822 hybrid contribution -0.458 -0.072 0.785 0.912 sum 0.951 -1.741 -13.875 14.016 Atomic orbital electron populations 1.21713 0.94160 1.01909 1.01953 1.21362 0.95978 1.00042 0.93508 0.90975 1.21919 0.87506 0.98890 0.97598 1.60206 1.08226 1.58697 1.05722 1.21818 1.00307 0.94475 0.89677 1.22038 0.96524 1.00977 0.97367 1.20878 0.93166 0.95639 0.84335 0.92058 1.44579 1.76484 1.10531 1.05931 1.17724 0.92726 0.91474 0.85596 1.20190 1.20854 0.93121 0.98178 1.20638 0.96811 0.98286 0.92437 1.21009 1.16113 0.95867 0.97768 1.17705 0.87162 0.91785 0.92705 1.19781 1.37112 0.93737 1.02948 0.91075 1.26703 0.93806 0.98758 0.98397 1.69925 1.26704 1.12025 1.36252 0.85312 0.79276 0.76976 0.78445 1.18462 1.19167 1.18601 1.20651 1.16466 0.99571 0.91766 0.93847 0.90666 0.92952 0.94627 0.88648 0.82376 0.94713 0.89639 0.92557 0.93035 0.77729 0.87286 0.86551 0.89317 0.90490 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.06 71.98 0.65 -2.58 16 2 C -0.09 -2.15 2.44 -10.74 -0.03 -2.18 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.07 1.33 5.83 86.33 0.50 1.83 16 5 N -0.70 -13.26 6.84 -514.02 -3.52 -16.78 16 6 C 0.07 1.46 6.55 86.33 0.57 2.03 16 7 C -0.13 -3.78 5.62 30.64 0.17 -3.61 16 8 C 0.17 5.02 1.63 45.07 0.07 5.10 16 9 H 0.06 1.98 6.47 -2.39 -0.02 1.96 16 10 N -0.75 -28.45 4.62 -318.74 -1.47 -29.92 16 11 C 0.23 10.67 6.63 38.16 0.25 10.92 16 12 C -0.30 -13.54 8.91 22.59 0.20 -13.33 16 13 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 14 C -0.29 -15.07 9.79 22.75 0.22 -14.85 16 15 C 0.11 6.26 5.57 -21.31 -0.12 6.14 16 16 C -0.51 -28.79 9.05 23.46 0.21 -28.58 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 18 C 0.04 2.00 5.14 85.25 0.44 2.44 16 19 N -0.82 -44.75 10.95 21.82 0.24 -44.51 16 20 Si 0.98 39.77 29.59 68.60 2.03 41.80 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 C -0.26 -14.22 8.53 22.86 0.19 -14.03 16 25 H 0.04 1.19 7.63 -2.39 -0.02 1.17 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 0.65 8.14 -2.38 -0.02 0.64 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.36 4.94 8.90 -89.69 -0.80 4.15 16 31 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16 35 H 0.39 14.69 8.54 -92.71 -0.79 13.89 16 36 H 0.11 4.33 6.07 -2.91 -0.02 4.31 16 37 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 40 H 0.10 5.62 6.17 -2.91 -0.02 5.60 16 Total: -1.00 -62.39 317.06 0.29 -62.09 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.55 Total: 40.71 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 3.57 Total: -53.40 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -4.75 Total: -91.21 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -62.39 0.29 -62.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.125 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds