Wall clock time and date at job start Mon Mar 30 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47241 * 2 1 4 4 C 1.48567 * 110.99936 * 175.50522 * 3 2 1 5 5 C 1.54375 * 104.59348 * 200.95608 * 4 3 2 6 6 C 1.54261 * 105.06166 * 23.85458 * 5 4 3 7 7 H 1.09005 * 110.32433 * 241.10111 * 6 5 4 8 8 N 1.46497 * 110.32713 * 118.99408 * 6 5 4 9 9 C 1.38858 * 119.99856 * 87.82784 * 8 6 5 10 10 C 1.39571 * 119.84281 * 359.72812 * 9 8 6 11 11 C 1.36337 * 120.16116 * 179.72058 * 10 9 8 12 12 C 1.40889 * 119.83604 * 0.54983 * 11 10 9 13 13 C 1.41140 * 120.15706 * 179.70057 * 12 11 10 14 14 H 1.07995 * 120.00144 * 207.07430 * 13 12 11 15 15 C 1.39874 * 119.99517 * 27.07192 * 13 12 11 16 16 N 1.30893 * 120.00248 * 13.33054 * 15 13 12 17 17 Si 1.86805 * 119.99430 * 193.33087 * 15 13 12 18 18 H 1.48499 * 109.47048 * 60.00062 * 17 15 13 19 19 H 1.48503 * 109.46773 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47214 * 299.99760 * 17 15 13 21 21 C 1.40878 * 119.68852 * 359.72534 * 12 11 10 22 22 C 1.36339 * 119.83953 * 359.97438 * 21 12 11 23 23 C 1.48552 * 111.00431 * 60.08437 * 3 2 1 24 24 H 1.09003 * 109.47411 * 294.21867 * 1 2 3 25 25 H 1.09000 * 109.47027 * 54.21121 * 1 2 3 26 26 H 1.08990 * 109.47527 * 174.21405 * 1 2 3 27 27 H 1.09001 * 109.47026 * 239.99311 * 2 1 3 28 28 H 1.08999 * 109.47071 * 119.99556 * 2 1 3 29 29 H 1.08996 * 110.41015 * 82.17828 * 4 3 2 30 30 H 1.08996 * 110.40826 * 319.73369 * 4 3 2 31 31 H 1.09004 * 110.32395 * 264.95606 * 5 4 3 32 32 H 1.09006 * 110.40945 * 142.79156 * 5 4 3 33 33 H 0.96998 * 120.00303 * 267.83279 * 8 6 5 34 34 H 1.07999 * 119.91908 * 359.97438 * 10 9 8 35 35 H 1.08008 * 120.08049 * 180.27675 * 11 10 9 36 36 H 0.97006 * 119.99881 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.08177 * 179.97438 * 21 12 11 38 38 H 1.07995 * 119.92440 * 180.02562 * 22 21 12 39 39 H 1.09001 * 110.41406 * 40.25974 * 23 3 2 40 40 H 1.08999 * 110.41705 * 277.82264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.5008 1.4260 0.1087 5 6 3.8134 2.8448 0.6306 6 6 2.5268 3.2997 1.3500 7 1 2.1207 4.1912 0.8718 8 7 2.8007 3.5624 2.7650 9 6 3.2321 4.8195 3.1669 10 6 3.4091 5.8289 2.2193 11 6 3.8270 7.0672 2.6075 12 6 4.0913 7.3235 3.9675 13 6 4.5302 8.6012 4.3760 14 1 5.1327 8.7061 5.2661 15 6 4.1849 9.7314 3.6278 16 7 3.2534 9.6505 2.7118 17 14 5.0533 11.3564 3.9360 18 1 6.5088 11.1942 3.6901 19 1 4.5082 12.3904 3.0200 20 1 4.8328 11.7765 5.3432 21 6 3.9159 6.2982 4.9176 22 6 3.4917 5.0664 4.5159 23 6 1.5451 2.1175 1.2020 24 1 -0.3634 0.4216 0.9372 25 1 -0.3633 0.6010 -0.8336 26 1 -0.3634 -1.0223 -0.1036 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9581 1.2711 -0.8685 30 1 3.8509 0.6748 0.8166 31 1 4.0388 3.5129 -0.2006 32 1 4.6487 2.8169 1.3304 33 1 2.6808 2.8581 3.4211 34 1 3.2107 5.6296 1.1766 35 1 3.9592 7.8486 1.8737 36 1 3.0137 10.4345 2.1932 37 1 4.1171 6.4875 5.9617 38 1 3.3564 4.2795 5.2431 39 1 1.5892 1.4746 2.0811 40 1 0.5299 2.4834 1.0482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328519598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:56 Heat of formation + Delta-G solvation = 26.915990 kcal Electronic energy + Delta-G solvation = -19004.597198 eV Core-core repulsion = 16204.546876 eV Total energy + Delta-G solvation = -2800.050323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.33717 -37.64378 -35.01789 -33.29367 -31.95030 -29.46738 -29.17700 -28.44264 -27.36057 -24.25547 -23.08132 -21.29007 -21.01664 -20.40110 -19.45868 -17.18623 -16.49586 -16.05792 -15.84967 -14.94795 -14.45322 -14.13095 -14.03479 -13.68838 -13.05774 -12.68741 -12.65269 -12.45857 -12.31454 -12.00764 -11.85159 -11.59730 -11.33462 -11.24133 -11.08373 -10.99853 -10.95103 -10.74836 -10.49750 -10.41974 -9.67640 -9.23537 -9.22302 -8.60416 -8.53451 -7.47321 -6.57134 -6.36040 -4.03255 2.95070 3.12161 3.16133 3.19368 3.36830 3.80232 4.08100 4.43435 4.67727 4.74343 4.83476 4.97585 5.18787 5.22305 5.29240 5.31399 5.52434 5.59891 5.69432 5.78051 5.83864 5.92257 6.00027 6.03180 6.25355 6.27672 6.34116 6.41310 6.69861 6.91676 6.96633 6.99913 7.22302 7.38471 7.58118 7.71613 7.86798 8.17591 8.31305 8.51331 8.71119 8.81833 9.08994 9.17194 10.42994 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043389 B = 0.003769 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.175336 B = 7427.345280 C = 7618.661380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 N -0.511 5.511 4 C 0.034 3.966 5 C -0.142 4.142 6 C 0.161 3.839 7 H 0.084 0.916 8 N -0.754 5.754 9 C 0.095 3.905 10 C -0.164 4.164 11 C -0.120 4.120 12 C 0.074 3.926 13 C -0.468 4.468 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.813 5.813 17 Si 0.905 3.095 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.185 4.185 22 C -0.161 4.161 23 C 0.029 3.971 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.382 0.618 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.276 0.724 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 -14.147 -5.190 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 N -0.235 5.235 4 C -0.094 4.094 5 C -0.182 4.182 6 C 0.053 3.947 7 H 0.102 0.898 8 N -0.389 5.389 9 C -0.002 4.002 10 C -0.186 4.186 11 C -0.140 4.140 12 C 0.071 3.929 13 C -0.499 4.499 14 H 0.089 0.911 15 C -0.142 4.142 16 N -0.441 5.441 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.205 4.205 22 C -0.183 4.183 23 C -0.100 4.100 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.214 0.786 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.839 -13.695 -6.036 15.233 hybrid contribution 0.523 0.068 1.114 1.233 sum -2.316 -13.626 -4.922 14.672 Atomic orbital electron populations 1.21801 0.94807 1.01649 1.02572 1.22233 0.96231 0.89671 1.00670 1.65433 1.07060 1.13064 1.37971 1.23108 0.88341 0.97494 1.00486 1.22929 0.99502 0.95163 1.00566 1.21268 0.92851 0.96926 0.83682 0.89757 1.43990 1.78675 1.11115 1.05091 1.17351 1.04714 0.85211 0.92932 1.20143 1.07992 0.94062 0.96399 1.20994 1.01773 0.94623 0.96562 1.17497 0.91904 0.92509 0.91011 1.19336 1.29953 0.90965 1.09651 0.91098 1.25779 0.93614 1.00670 0.94097 1.69815 1.23764 1.31281 1.19242 0.86430 0.80539 0.81026 0.78952 1.19163 1.20594 1.19337 1.20564 1.08237 0.94125 0.97597 1.19799 1.08376 0.97341 0.92812 1.23342 0.99795 0.95356 0.91476 0.92695 0.91645 0.92393 0.90771 0.94949 0.90401 0.94155 0.91016 0.90489 0.78563 0.89233 0.86197 0.91337 0.89104 0.89706 0.93688 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.63 37.16 0.36 -0.96 16 2 C 0.04 0.39 5.63 -3.83 -0.02 0.37 16 3 N -0.51 -6.09 5.45 -229.98 -1.25 -7.34 16 4 C 0.03 0.40 6.49 -2.18 -0.01 0.38 16 5 C -0.14 -1.98 6.79 -25.35 -0.17 -2.15 16 6 C 0.16 2.43 3.03 -66.55 -0.20 2.23 16 7 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 8 N -0.75 -12.96 5.18 -50.70 -0.26 -13.22 16 9 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 10 C -0.16 -3.84 9.14 -39.77 -0.36 -4.20 16 11 C -0.12 -3.15 8.61 -39.26 -0.34 -3.49 16 12 C 0.07 2.00 5.56 -106.79 -0.59 1.41 16 13 C -0.47 -12.80 9.04 -37.87 -0.34 -13.15 16 14 H 0.07 1.87 7.88 -52.49 -0.41 1.46 16 15 C 0.07 1.90 5.21 -17.34 -0.09 1.81 16 16 N -0.81 -21.79 10.85 55.54 0.60 -21.19 16 17 Si 0.91 19.46 29.58 -169.99 -5.03 14.43 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 C -0.18 -4.61 9.74 -39.27 -0.38 -4.99 16 22 C -0.16 -3.62 9.82 -39.77 -0.39 -4.01 16 23 C 0.03 0.37 5.08 -2.19 -0.01 0.35 16 24 H 0.05 0.50 7.26 -51.93 -0.38 0.12 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.46 7.90 -51.93 -0.41 0.05 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 33 H 0.38 5.90 8.36 -40.82 -0.34 5.56 16 34 H 0.09 1.93 6.21 -52.49 -0.33 1.60 16 35 H 0.12 3.29 6.17 -52.48 -0.32 2.96 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.04 0.55 7.58 -51.93 -0.39 0.15 16 40 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -27.82 319.50 -10.49 -38.32 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.25 Total: 9.09 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.12 Total: -24.90 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.91 Total: -41.75 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.82 -10.49 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328519598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.232 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds