Wall clock time and date at job start Mon Mar 30 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47241 * 2 1 4 4 C 1.48567 * 110.99936 * 175.50522 * 3 2 1 5 5 C 1.54375 * 104.59348 * 200.95608 * 4 3 2 6 6 C 1.54261 * 105.06166 * 23.85458 * 5 4 3 7 7 H 1.09005 * 110.32433 * 241.10111 * 6 5 4 8 8 N 1.46497 * 110.32713 * 118.99408 * 6 5 4 9 9 C 1.38858 * 119.99856 * 87.82784 * 8 6 5 10 10 C 1.39571 * 119.84281 * 359.72812 * 9 8 6 11 11 C 1.36337 * 120.16116 * 179.72058 * 10 9 8 12 12 C 1.40889 * 119.83604 * 0.54983 * 11 10 9 13 13 C 1.41140 * 120.15706 * 179.70057 * 12 11 10 14 14 H 1.07995 * 120.00144 * 207.07430 * 13 12 11 15 15 C 1.39874 * 119.99517 * 27.07192 * 13 12 11 16 16 N 1.30893 * 120.00248 * 13.33054 * 15 13 12 17 17 Si 1.86805 * 119.99430 * 193.33087 * 15 13 12 18 18 H 1.48499 * 109.47048 * 60.00062 * 17 15 13 19 19 H 1.48503 * 109.46773 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47214 * 299.99760 * 17 15 13 21 21 C 1.40878 * 119.68852 * 359.72534 * 12 11 10 22 22 C 1.36339 * 119.83953 * 359.97438 * 21 12 11 23 23 C 1.48552 * 111.00431 * 60.08437 * 3 2 1 24 24 H 1.09003 * 109.47411 * 294.21867 * 1 2 3 25 25 H 1.09000 * 109.47027 * 54.21121 * 1 2 3 26 26 H 1.08990 * 109.47527 * 174.21405 * 1 2 3 27 27 H 1.09001 * 109.47026 * 239.99311 * 2 1 3 28 28 H 1.08999 * 109.47071 * 119.99556 * 2 1 3 29 29 H 1.08996 * 110.41015 * 82.17828 * 4 3 2 30 30 H 1.08996 * 110.40826 * 319.73369 * 4 3 2 31 31 H 1.09004 * 110.32395 * 264.95606 * 5 4 3 32 32 H 1.09006 * 110.40945 * 142.79156 * 5 4 3 33 33 H 0.96998 * 120.00303 * 267.83279 * 8 6 5 34 34 H 1.07999 * 119.91908 * 359.97438 * 10 9 8 35 35 H 1.08008 * 120.08049 * 180.27675 * 11 10 9 36 36 H 0.97006 * 119.99881 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.08177 * 179.97438 * 21 12 11 38 38 H 1.07995 * 119.92440 * 180.02562 * 22 21 12 39 39 H 1.09001 * 110.41406 * 40.25974 * 23 3 2 40 40 H 1.08999 * 110.41705 * 277.82264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.5008 1.4260 0.1087 5 6 3.8134 2.8448 0.6306 6 6 2.5268 3.2997 1.3500 7 1 2.1207 4.1912 0.8718 8 7 2.8007 3.5624 2.7650 9 6 3.2321 4.8195 3.1669 10 6 3.4091 5.8289 2.2193 11 6 3.8270 7.0672 2.6075 12 6 4.0913 7.3235 3.9675 13 6 4.5302 8.6012 4.3760 14 1 5.1327 8.7061 5.2661 15 6 4.1849 9.7314 3.6278 16 7 3.2534 9.6505 2.7118 17 14 5.0533 11.3564 3.9360 18 1 6.5088 11.1942 3.6901 19 1 4.5082 12.3904 3.0200 20 1 4.8328 11.7765 5.3432 21 6 3.9159 6.2982 4.9176 22 6 3.4917 5.0664 4.5159 23 6 1.5451 2.1175 1.2020 24 1 -0.3634 0.4216 0.9372 25 1 -0.3633 0.6010 -0.8336 26 1 -0.3634 -1.0223 -0.1036 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9581 1.2711 -0.8685 30 1 3.8509 0.6748 0.8166 31 1 4.0388 3.5129 -0.2006 32 1 4.6487 2.8169 1.3304 33 1 2.6808 2.8581 3.4211 34 1 3.2107 5.6296 1.1766 35 1 3.9592 7.8486 1.8737 36 1 3.0137 10.4345 2.1932 37 1 4.1171 6.4875 5.9617 38 1 3.3564 4.2795 5.2431 39 1 1.5892 1.4746 2.0811 40 1 0.5299 2.4834 1.0482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328519598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:56 Heat of formation + Delta-G solvation = 10.446652 kcal Electronic energy + Delta-G solvation = -19005.311362 eV Core-core repulsion = 16204.546876 eV Total energy + Delta-G solvation = -2800.764487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53400 -39.30293 -36.53635 -34.91623 -33.22035 -31.35333 -30.73749 -29.41638 -28.79264 -26.05604 -24.15639 -22.90106 -22.40319 -21.62138 -20.91484 -19.13890 -17.99747 -17.25069 -16.99797 -16.74842 -15.80541 -15.36835 -15.22347 -15.02308 -14.48093 -14.27224 -13.99775 -13.89371 -13.76403 -13.41662 -13.27504 -12.99677 -12.73052 -12.58473 -12.48920 -12.24263 -12.21477 -12.10502 -11.79626 -11.67176 -11.56192 -11.11677 -11.06446 -10.29646 -9.49670 -9.39302 -8.49396 -8.14792 -6.02170 1.12198 1.20344 1.40569 1.51702 1.59882 2.28595 2.67695 2.87527 3.24369 3.61637 3.77452 3.89582 4.08502 4.24752 4.28335 4.32851 4.46828 4.49447 4.54355 4.59919 4.66470 4.87249 4.94405 4.95742 5.03329 5.07803 5.11265 5.15775 5.23886 5.28901 5.33131 5.46653 5.67033 5.79530 5.86007 5.97950 6.06938 6.20300 6.40622 6.68304 6.88085 7.10074 7.14952 7.31106 8.52018 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043389 B = 0.003769 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.175336 B = 7427.345280 C = 7618.661380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.520 5.520 4 C 0.041 3.959 5 C -0.139 4.139 6 C 0.154 3.846 7 H 0.064 0.936 8 N -0.741 5.741 9 C 0.117 3.883 10 C -0.174 4.174 11 C -0.139 4.139 12 C 0.034 3.966 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.029 3.971 16 N -0.847 5.847 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.263 1.263 21 C -0.193 4.193 22 C -0.167 4.167 23 C 0.039 3.961 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.281 0.719 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -16.087 -5.336 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 N -0.245 5.245 4 C -0.087 4.087 5 C -0.179 4.179 6 C 0.047 3.953 7 H 0.082 0.918 8 N -0.376 5.376 9 C 0.018 3.982 10 C -0.196 4.196 11 C -0.159 4.159 12 C 0.031 3.969 13 C -0.538 4.538 14 H 0.085 0.915 15 C -0.182 4.182 16 N -0.476 5.476 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.187 1.187 21 C -0.213 4.213 22 C -0.189 4.189 23 C -0.089 4.089 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.230 0.770 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.131 -15.693 -6.189 17.158 hybrid contribution 0.546 0.455 1.117 1.323 sum -2.585 -15.239 -5.073 16.268 Atomic orbital electron populations 1.21786 0.94131 1.02628 1.02020 1.22324 0.96790 0.88315 1.01468 1.65456 1.07068 1.14586 1.37426 1.23061 0.88445 0.95873 1.01294 1.22831 0.98245 0.96801 0.99996 1.21386 0.94302 0.97396 0.82201 0.91792 1.43983 1.77358 1.09716 1.06544 1.17423 1.02042 0.86319 0.92411 1.20262 1.08054 0.93658 0.97602 1.20908 1.03478 0.95384 0.96132 1.17815 0.93740 0.93479 0.91853 1.19582 1.31461 0.92135 1.10613 0.91454 1.26608 0.93907 1.04072 0.93625 1.69895 1.24936 1.32505 1.20227 0.85320 0.79195 0.76417 0.79077 1.18762 1.19535 1.18710 1.20778 1.08110 0.94743 0.97672 1.20097 1.07638 0.97334 0.93854 1.23201 0.98901 0.94420 0.92398 0.93115 0.92368 0.90648 0.89686 0.94371 0.89176 0.93206 0.91555 0.91645 0.76989 0.87913 0.88281 0.90893 0.88502 0.86410 0.92624 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.63 71.98 0.69 -1.49 16 2 C 0.04 0.64 5.63 86.30 0.49 1.12 16 3 N -0.52 -11.02 5.45 -881.53 -4.80 -15.82 16 4 C 0.04 0.85 6.49 86.45 0.56 1.42 16 5 C -0.14 -3.66 6.79 31.49 0.21 -3.45 16 6 C 0.15 4.43 3.03 45.89 0.14 4.56 16 7 H 0.06 2.13 6.47 -2.38 -0.02 2.11 16 8 N -0.74 -23.94 5.18 -314.31 -1.63 -25.57 16 9 C 0.12 4.95 6.67 38.67 0.26 5.21 16 10 C -0.17 -8.21 9.14 22.15 0.20 -8.01 16 11 C -0.14 -7.59 8.61 22.48 0.19 -7.40 16 12 C 0.03 1.91 5.56 -21.27 -0.12 1.79 16 13 C -0.51 -28.79 9.04 23.38 0.21 -28.58 16 14 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 15 C 0.03 1.54 5.21 85.23 0.44 1.99 16 16 N -0.85 -46.98 10.85 21.82 0.24 -46.75 16 17 Si 0.98 40.72 29.58 68.60 2.03 42.75 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 C -0.19 -9.70 9.74 22.47 0.22 -9.48 16 22 C -0.17 -7.29 9.82 22.15 0.22 -7.07 16 23 C 0.04 0.90 5.08 86.45 0.44 1.34 16 24 H 0.05 0.79 7.26 -2.39 -0.02 0.77 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 0.60 7.97 -2.39 -0.02 0.58 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.88 7.95 -2.38 -0.02 1.86 16 33 H 0.40 10.98 8.36 -92.71 -0.78 10.21 16 34 H 0.10 4.48 6.21 -2.91 -0.02 4.46 16 35 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 36 H 0.28 14.26 8.30 -92.70 -0.77 13.49 16 37 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.06 1.17 7.58 -2.39 -0.02 1.15 16 40 H 0.09 1.96 7.80 -2.39 -0.02 1.94 16 Total: -1.00 -61.31 319.50 0.24 -61.07 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.25 Total: 32.37 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 4.16 Total: -48.05 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -6.19 Total: -88.14 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -61.31 0.24 -61.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328519598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.515 kcal (2) G-P(sol) polarization free energy of solvation -61.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds