Wall clock time and date at job start Mon Mar 30 2020 06:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46816 * 110.99666 * 2 1 4 4 C 1.51714 * 111.16575 * 211.31503 * 3 2 1 5 5 C 1.51767 * 113.89039 * 292.44653 * 4 3 2 6 6 C 1.53174 * 110.61518 * 66.80615 * 5 4 3 7 7 H 1.08997 * 109.71022 * 36.51541 * 6 5 4 8 8 N 1.46905 * 109.71490 * 157.14655 * 6 5 4 9 9 C 1.46896 * 110.99929 * 279.26509 * 8 6 5 10 10 C 1.50705 * 109.47091 * 179.97438 * 9 8 6 11 11 H 1.07991 * 119.99783 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99655 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00724 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46984 * 59.99763 * 14 12 10 16 16 H 1.48494 * 109.47220 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47071 * 300.00205 * 14 12 10 18 18 C 1.51469 * 108.23753 * 276.83260 * 6 5 4 19 19 C 1.38163 * 119.72340 * 249.45962 * 18 6 5 20 20 C 1.38377 * 119.65848 * 180.44233 * 19 18 6 21 21 C 1.38316 * 120.14878 * 359.47468 * 20 19 18 22 22 C 1.38138 * 120.18915 * 0.48071 * 21 20 19 23 23 C 1.37779 * 119.85956 * 69.56460 * 18 6 5 24 24 H 1.08994 * 109.47393 * 293.00634 * 1 2 3 25 25 H 1.08998 * 109.47692 * 53.01205 * 1 2 3 26 26 H 1.09007 * 109.46662 * 173.01275 * 1 2 3 27 27 H 1.08997 * 109.13858 * 331.74939 * 3 2 1 28 28 H 1.09001 * 109.13795 * 90.87892 * 3 2 1 29 29 H 1.08994 * 108.59754 * 53.58941 * 4 3 2 30 30 H 1.08997 * 108.59604 * 171.44824 * 4 3 2 31 31 H 1.09005 * 109.24368 * 187.09316 * 5 4 3 32 32 H 1.08996 * 109.25213 * 306.50397 * 5 4 3 33 33 H 1.00901 * 111.00083 * 155.31683 * 8 6 5 34 34 H 1.08995 * 109.47783 * 300.00463 * 9 8 6 35 35 H 1.09007 * 109.46918 * 60.00499 * 9 8 6 36 36 H 0.96991 * 120.00348 * 180.02562 * 13 12 10 37 37 H 1.07994 * 120.17610 * 0.16268 * 19 18 6 38 38 H 1.07997 * 119.92307 * 179.73752 * 20 19 18 39 39 H 1.07998 * 119.90439 * 180.19410 * 21 20 19 40 40 H 1.07993 * 120.20273 * 179.77908 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3707 0.0000 4 6 3.3197 1.4490 -0.7353 5 6 4.4543 0.7220 -0.0370 6 6 4.2048 -0.7892 -0.0329 7 1 3.7311 -1.0862 -0.9685 8 7 5.4798 -1.5015 0.1257 9 6 6.1948 -1.5924 -1.1543 10 6 7.4950 -2.3271 -0.9524 11 1 7.7631 -2.6906 0.0285 12 6 8.3421 -2.5352 -2.0201 13 7 8.0159 -2.0921 -3.2147 14 14 9.9535 -3.4465 -1.7701 15 1 9.6752 -4.8136 -1.2611 16 1 10.6763 -3.5383 -3.0640 17 1 10.7897 -2.7128 -0.7863 18 6 3.2896 -1.1154 1.1291 19 6 3.7820 -1.8163 2.2132 20 6 2.9423 -2.1216 3.2699 21 6 1.6197 -1.7175 3.2454 22 6 1.1277 -1.0159 2.1620 23 6 1.9719 -0.7140 1.0981 24 1 -0.3634 0.4016 0.9459 25 1 -0.3634 0.6183 -0.8208 26 1 -0.3633 -1.0201 -0.1250 27 1 1.2762 2.0293 -0.4874 28 1 2.1378 1.6986 1.0296 29 1 3.1915 1.0202 -1.7291 30 1 3.5958 2.4979 -0.8433 31 1 5.3889 0.9305 -0.5577 32 1 4.5296 1.0767 0.9909 33 1 5.3354 -2.4169 0.5249 34 1 5.5809 -2.1311 -1.8761 35 1 6.3991 -0.5891 -1.5283 36 1 8.6117 -2.2389 -3.9658 37 1 4.8157 -2.1282 2.2338 38 1 3.3217 -2.6729 4.1175 39 1 0.9687 -1.9551 4.0737 40 1 0.0942 -0.7034 2.1410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334638956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:15 Heat of formation + Delta-G solvation = 38.814746 kcal Electronic energy + Delta-G solvation = -19761.707588 eV Core-core repulsion = 16962.173234 eV Total energy + Delta-G solvation = -2799.534354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42456 -36.76639 -36.27633 -33.28668 -32.04809 -30.62415 -29.79316 -27.68194 -26.12794 -25.08188 -23.72182 -21.84694 -21.24812 -20.23921 -19.49195 -17.43189 -16.33791 -15.88647 -15.16189 -14.78221 -14.63217 -14.42851 -14.28158 -13.95127 -13.51693 -13.18958 -13.05433 -12.43835 -12.27740 -12.19477 -12.06237 -11.64170 -11.34888 -11.22046 -10.94024 -10.80726 -10.67625 -10.53578 -10.49696 -10.12199 -9.76404 -9.29416 -9.09511 -8.54272 -8.42463 -7.81036 -7.25321 -5.99215 -4.01002 1.53969 1.60709 3.36139 3.39856 3.42942 3.74997 4.02545 4.45734 4.85953 4.93014 5.04791 5.10209 5.16764 5.26106 5.28035 5.36741 5.41935 5.43837 5.55993 5.68271 5.71975 5.84670 5.87428 6.01618 6.11107 6.22418 6.27385 6.37012 6.48560 6.63564 6.66706 6.79448 6.81351 6.96513 7.12498 7.34002 7.45332 7.49711 7.83287 8.18609 8.43956 8.65767 9.07980 9.63581 11.11843 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.005227 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.634743 B = 5355.630971 C = 6100.436508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.494 5.494 3 C 0.062 3.938 4 C -0.117 4.117 5 C -0.100 4.100 6 C 0.132 3.868 7 H 0.053 0.947 8 N -0.687 5.687 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.074 4.074 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.172 4.172 23 C 0.100 3.900 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.330 0.670 34 H -0.014 1.014 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.141 0.859 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 5.207 9.354 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.211 5.211 3 C -0.063 4.063 4 C -0.156 4.156 5 C -0.138 4.138 6 C 0.022 3.978 7 H 0.071 0.929 8 N -0.319 5.319 9 C 0.069 3.931 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.076 4.076 19 C -0.110 4.110 20 C -0.158 4.158 21 C -0.132 4.132 22 C -0.193 4.193 23 C 0.003 3.997 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.004 0.996 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.693 5.598 8.859 18.047 hybrid contribution 0.000 -0.843 0.214 0.870 sum -14.693 4.755 9.073 17.911 Atomic orbital electron populations 1.22553 0.86591 1.02847 1.00585 1.59505 1.08009 1.14234 1.39337 1.21926 0.97414 0.87026 0.99954 1.21130 0.93640 1.00370 1.00444 1.21265 0.98207 0.93933 1.00440 1.20483 0.88946 0.94597 0.93803 0.92913 1.60829 1.17869 1.22981 1.30217 1.19566 0.92472 0.96876 0.84203 1.21147 1.03510 1.35635 0.94944 0.92074 1.24976 0.98416 0.96016 0.95092 1.69952 1.37446 1.46531 0.99786 0.86563 0.83443 0.80193 0.77191 1.20307 1.21386 1.20187 1.19780 0.92887 0.97974 0.96968 1.21215 1.00577 0.96790 0.92449 1.21149 0.93840 1.01669 0.99125 1.20918 0.95718 0.98801 0.97779 1.21427 1.00277 1.03641 0.93917 1.18612 0.93373 0.98493 0.89173 0.94682 0.90995 0.90965 0.90933 0.93897 0.91245 0.91694 0.90330 0.92601 0.85193 0.99601 0.95243 0.92905 0.84182 0.86362 0.86709 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.43 60.06 0.51 0.73 16 2 N -0.49 -6.79 4.46 -179.88 -0.80 -7.59 16 3 C 0.06 0.78 5.37 -4.52 -0.02 0.76 16 4 C -0.12 -1.67 5.49 -28.01 -0.15 -1.82 16 5 C -0.10 -1.73 5.27 -27.27 -0.14 -1.88 16 6 C 0.13 2.50 2.24 -68.39 -0.15 2.35 16 7 H 0.05 1.11 7.61 -51.93 -0.40 0.72 16 8 N -0.69 -14.96 5.63 -108.72 -0.61 -15.57 16 9 C 0.20 5.17 5.22 -4.98 -0.03 5.14 16 10 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.07 -1.24 4.97 -104.44 -0.52 -1.76 16 19 C -0.09 -1.44 9.00 -39.56 -0.36 -1.80 16 20 C -0.14 -1.86 10.05 -39.50 -0.40 -2.26 16 21 C -0.11 -1.41 10.03 -39.59 -0.40 -1.80 16 22 C -0.17 -2.24 9.00 -39.29 -0.35 -2.59 16 23 C 0.10 1.49 5.01 -83.81 -0.42 1.07 16 24 H 0.03 0.32 6.35 -51.93 -0.33 -0.01 16 25 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 26 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 27 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 28 H 0.04 0.55 7.76 -51.93 -0.40 0.14 16 29 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 32 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 33 H 0.33 6.94 6.73 -39.29 -0.26 6.68 16 34 H -0.01 -0.39 8.07 -51.93 -0.42 -0.81 16 35 H 0.03 0.83 7.05 -51.92 -0.37 0.47 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.14 2.26 6.31 -52.49 -0.33 1.93 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.32 5.74 -52.49 -0.30 1.02 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -30.56 311.46 -9.89 -40.45 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.03 Total: 4.76 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.86 Total: -17.28 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.68 Total: -49.45 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.56 -9.89 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334638956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.265 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds