Wall clock time and date at job start Mon Mar 30 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46816 * 110.99666 * 2 1 4 4 C 1.51714 * 111.16575 * 211.31503 * 3 2 1 5 5 C 1.51767 * 113.89039 * 292.44653 * 4 3 2 6 6 C 1.53174 * 110.61518 * 66.80615 * 5 4 3 7 7 H 1.08997 * 109.71022 * 36.51541 * 6 5 4 8 8 N 1.46905 * 109.71490 * 157.14655 * 6 5 4 9 9 C 1.46896 * 110.99929 * 279.26509 * 8 6 5 10 10 C 1.50705 * 109.47091 * 179.97438 * 9 8 6 11 11 H 1.07991 * 119.99783 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99655 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00724 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46984 * 59.99763 * 14 12 10 16 16 H 1.48494 * 109.47220 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47071 * 300.00205 * 14 12 10 18 18 C 1.51469 * 108.23753 * 276.83260 * 6 5 4 19 19 C 1.38163 * 119.72340 * 249.45962 * 18 6 5 20 20 C 1.38377 * 119.65848 * 180.44233 * 19 18 6 21 21 C 1.38316 * 120.14878 * 359.47468 * 20 19 18 22 22 C 1.38138 * 120.18915 * 0.48071 * 21 20 19 23 23 C 1.37779 * 119.85956 * 69.56460 * 18 6 5 24 24 H 1.08994 * 109.47393 * 293.00634 * 1 2 3 25 25 H 1.08998 * 109.47692 * 53.01205 * 1 2 3 26 26 H 1.09007 * 109.46662 * 173.01275 * 1 2 3 27 27 H 1.08997 * 109.13858 * 331.74939 * 3 2 1 28 28 H 1.09001 * 109.13795 * 90.87892 * 3 2 1 29 29 H 1.08994 * 108.59754 * 53.58941 * 4 3 2 30 30 H 1.08997 * 108.59604 * 171.44824 * 4 3 2 31 31 H 1.09005 * 109.24368 * 187.09316 * 5 4 3 32 32 H 1.08996 * 109.25213 * 306.50397 * 5 4 3 33 33 H 1.00901 * 111.00083 * 155.31683 * 8 6 5 34 34 H 1.08995 * 109.47783 * 300.00463 * 9 8 6 35 35 H 1.09007 * 109.46918 * 60.00499 * 9 8 6 36 36 H 0.96991 * 120.00348 * 180.02562 * 13 12 10 37 37 H 1.07994 * 120.17610 * 0.16268 * 19 18 6 38 38 H 1.07997 * 119.92307 * 179.73752 * 20 19 18 39 39 H 1.07998 * 119.90439 * 180.19410 * 21 20 19 40 40 H 1.07993 * 120.20273 * 179.77908 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3707 0.0000 4 6 3.3197 1.4490 -0.7353 5 6 4.4543 0.7220 -0.0370 6 6 4.2048 -0.7892 -0.0329 7 1 3.7311 -1.0862 -0.9685 8 7 5.4798 -1.5015 0.1257 9 6 6.1948 -1.5924 -1.1543 10 6 7.4950 -2.3271 -0.9524 11 1 7.7631 -2.6906 0.0285 12 6 8.3421 -2.5352 -2.0201 13 7 8.0159 -2.0921 -3.2147 14 14 9.9535 -3.4465 -1.7701 15 1 9.6752 -4.8136 -1.2611 16 1 10.6763 -3.5383 -3.0640 17 1 10.7897 -2.7128 -0.7863 18 6 3.2896 -1.1154 1.1291 19 6 3.7820 -1.8163 2.2132 20 6 2.9423 -2.1216 3.2699 21 6 1.6197 -1.7175 3.2454 22 6 1.1277 -1.0159 2.1620 23 6 1.9719 -0.7140 1.0981 24 1 -0.3634 0.4016 0.9459 25 1 -0.3634 0.6183 -0.8208 26 1 -0.3633 -1.0201 -0.1250 27 1 1.2762 2.0293 -0.4874 28 1 2.1378 1.6986 1.0296 29 1 3.1915 1.0202 -1.7291 30 1 3.5958 2.4979 -0.8433 31 1 5.3889 0.9305 -0.5577 32 1 4.5296 1.0767 0.9909 33 1 5.3354 -2.4169 0.5249 34 1 5.5809 -2.1311 -1.8761 35 1 6.3991 -0.5891 -1.5283 36 1 8.6117 -2.2389 -3.9658 37 1 4.8157 -2.1282 2.2338 38 1 3.3217 -2.6729 4.1175 39 1 0.9687 -1.9551 4.0737 40 1 0.0942 -0.7034 2.1410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334638956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:14 Heat of formation + Delta-G solvation = 19.292039 kcal Electronic energy + Delta-G solvation = -19762.554156 eV Core-core repulsion = 16962.173234 eV Total energy + Delta-G solvation = -2800.380922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55061 -37.84841 -37.78982 -35.18979 -33.67259 -32.00725 -30.88242 -29.10032 -27.78434 -26.16816 -25.20611 -23.54466 -22.57744 -21.32829 -20.91639 -18.89061 -18.11422 -17.09450 -16.70329 -16.25614 -15.97605 -15.71920 -15.54761 -15.20601 -14.88920 -14.51590 -14.44134 -13.95695 -13.83719 -13.52122 -13.35688 -12.94784 -12.75752 -12.67653 -12.59176 -12.25276 -12.09160 -12.01699 -11.90105 -11.69891 -11.41990 -11.25155 -10.65456 -10.25831 -9.67157 -9.16668 -8.83205 -8.22119 -6.33840 0.46944 0.49957 1.40747 1.44882 1.52841 2.40035 2.75101 2.96735 3.10837 3.46183 3.76971 3.92172 4.08256 4.09555 4.17727 4.25681 4.35061 4.43938 4.50560 4.56617 4.64206 4.74311 4.85892 4.92233 4.94663 4.96962 4.99655 5.11800 5.14505 5.24371 5.25129 5.37839 5.45937 5.54262 5.62936 5.70616 5.92227 6.03722 6.12047 6.40343 6.46260 6.71066 6.87352 7.36966 8.89587 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.005227 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.634743 B = 5355.630971 C = 6100.436508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.067 3.933 4 C -0.113 4.113 5 C -0.095 4.095 6 C 0.137 3.863 7 H 0.022 0.978 8 N -0.680 5.680 9 C 0.214 3.786 10 C -0.537 4.537 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.975 3.025 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.140 4.140 21 C -0.104 4.104 22 C -0.170 4.170 23 C 0.093 3.907 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.333 0.667 34 H -0.048 1.048 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.762 5.200 11.375 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.235 5.235 3 C -0.058 4.058 4 C -0.152 4.152 5 C -0.133 4.133 6 C 0.027 3.973 7 H 0.040 0.960 8 N -0.312 5.312 9 C 0.086 3.914 10 C -0.575 4.575 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.799 3.201 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.104 4.104 19 C -0.128 4.128 20 C -0.159 4.159 21 C -0.123 4.123 22 C -0.190 4.190 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.152 0.848 34 H -0.030 1.030 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.227 5.598 10.896 20.331 hybrid contribution 0.384 -0.828 -0.402 0.997 sum -15.843 4.770 10.494 19.593 Atomic orbital electron populations 1.22644 0.84346 1.03341 1.02265 1.59447 1.10156 1.14674 1.39240 1.21902 0.96708 0.87151 1.00006 1.21104 0.93910 1.00882 0.99282 1.21203 0.98232 0.93351 1.00533 1.20402 0.87815 0.95093 0.94033 0.95970 1.60750 1.19700 1.23332 1.27377 1.19170 0.92284 0.94524 0.85389 1.21503 1.04385 1.36206 0.95385 0.91669 1.25974 1.02450 0.96681 0.94555 1.70095 1.39021 1.47551 1.00768 0.85358 0.78279 0.79025 0.77450 1.19106 1.20720 1.19199 1.19623 0.93701 1.00548 0.96558 1.21194 1.00524 0.97677 0.93454 1.21408 0.94178 1.01438 0.98835 1.21354 0.95518 0.97028 0.98385 1.21756 1.01235 1.02913 0.93068 1.18756 0.92797 0.98568 0.90227 0.92772 0.89423 0.91145 0.87898 0.93668 0.93028 0.89523 0.93577 0.92203 0.84831 1.03031 0.97917 0.92607 0.85697 0.84038 0.83146 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.43 127.69 1.08 1.45 16 2 N -0.52 -13.55 4.46 -723.03 -3.23 -16.78 16 3 C 0.07 1.59 5.37 85.90 0.46 2.05 16 4 C -0.11 -3.27 5.49 29.77 0.16 -3.10 16 5 C -0.09 -3.48 5.27 30.25 0.16 -3.32 16 6 C 0.14 5.53 2.24 44.47 0.10 5.63 16 7 H 0.02 1.03 7.61 -2.39 -0.02 1.01 16 8 N -0.68 -31.65 5.63 -497.87 -2.80 -34.45 16 9 C 0.21 12.14 5.22 85.56 0.45 12.59 16 10 C -0.54 -31.71 9.32 25.60 0.24 -31.47 16 11 H 0.07 3.71 7.81 -2.92 -0.02 3.69 16 12 C 0.00 0.09 5.46 84.65 0.46 0.56 16 13 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 14 Si 0.98 45.25 29.54 68.60 2.03 47.27 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.10 -3.49 4.97 -19.75 -0.10 -3.58 16 19 C -0.11 -3.47 9.00 22.28 0.20 -3.27 16 20 C -0.14 -3.45 10.05 22.32 0.22 -3.23 16 21 C -0.10 -2.21 10.03 22.26 0.22 -1.99 16 22 C -0.17 -3.86 9.00 22.46 0.20 -3.66 16 23 C 0.09 2.68 5.01 37.89 0.19 2.87 16 24 H 0.05 0.77 6.35 -2.39 -0.02 0.75 16 25 H 0.09 1.29 7.86 -2.39 -0.02 1.27 16 26 H 0.07 1.28 8.13 -2.38 -0.02 1.26 16 27 H 0.10 1.80 7.56 -2.39 -0.02 1.78 16 28 H 0.04 1.05 7.76 -2.39 -0.02 1.04 16 29 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.94 6.91 -2.38 -0.02 1.92 16 32 H 0.06 2.10 7.89 -2.39 -0.02 2.08 16 33 H 0.33 14.93 6.73 -89.69 -0.60 14.33 16 34 H -0.05 -2.98 8.07 -2.39 -0.02 -3.00 16 35 H 0.00 0.17 7.05 -2.38 -0.02 0.15 16 36 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 37 H 0.13 4.20 6.31 -2.91 -0.02 4.18 16 38 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.15 2.54 5.74 -2.91 -0.02 2.52 16 Total: -1.00 -69.11 311.46 0.76 -68.36 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.42 Total: 21.83 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.05 Total: -28.47 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.74 Total: -108.98 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.11 0.76 -68.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334638956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.649 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds