Wall clock time and date at job start Mon Mar 30 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.26988 * 2 1 4 4 C 1.54595 * 110.30919 * 237.91381 * 2 1 3 5 5 C 1.54936 * 102.92007 * 219.12553 * 4 2 1 6 6 N 1.48536 * 103.22841 * 37.41186 * 5 4 2 7 7 C 1.39857 * 110.99818 * 200.27852 * 6 5 4 8 8 C 1.39601 * 119.83870 * 239.87437 * 7 6 5 9 9 C 1.38050 * 120.54967 * 180.02562 * 8 7 6 10 10 C 1.38737 * 120.22077 * 359.97438 * 9 8 7 11 11 N 1.38861 * 120.16240 * 180.02562 * 10 9 8 12 12 C 1.41559 * 119.67570 * 359.97438 * 10 9 8 13 13 C 1.41026 * 120.26944 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99647 * 330.10793 * 13 12 10 15 15 C 1.39888 * 119.99795 * 150.11742 * 13 12 10 16 16 N 1.30906 * 119.99924 * 335.30941 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 155.31446 * 15 13 12 18 18 H 1.48500 * 109.46999 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46875 * 299.99551 * 17 15 13 20 20 H 1.48496 * 109.46974 * 59.99726 * 17 15 13 21 21 C 1.38005 * 119.83990 * 60.13641 * 7 6 5 22 22 C 1.47899 * 105.81687 * 320.79657 * 6 5 4 23 23 H 1.09002 * 109.91160 * 265.97138 * 22 6 5 24 24 C 1.53004 * 109.91463 * 144.68687 * 22 6 5 25 25 H 1.09002 * 109.46728 * 180.63265 * 1 2 3 26 26 H 1.08998 * 109.47146 * 300.63801 * 1 2 3 27 27 H 1.09005 * 109.47358 * 60.63652 * 1 2 3 28 28 H 1.08994 * 110.72533 * 100.76712 * 4 2 1 29 29 H 1.09000 * 110.87948 * 337.55158 * 4 2 1 30 30 H 1.08999 * 110.66661 * 278.97454 * 5 4 2 31 31 H 1.09000 * 110.80963 * 155.91503 * 5 4 2 32 32 H 1.08001 * 119.72609 * 0.02562 * 8 7 6 33 33 H 1.08005 * 119.89107 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00213 * 173.26000 * 11 10 9 35 35 H 0.97002 * 120.00214 * 353.25669 * 11 10 9 36 36 H 0.96999 * 119.99791 * 354.33972 * 16 15 13 37 37 H 1.08004 * 120.11502 * 359.97223 * 21 7 6 38 38 H 1.09001 * 109.47658 * 61.44803 * 24 22 6 39 39 H 1.09001 * 109.46762 * 181.44966 * 24 22 6 40 40 H 1.09002 * 109.46602 * 301.44333 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0666 -0.7701 -1.2284 5 6 3.2855 -1.5341 -0.6529 6 7 2.8313 -1.9242 0.7064 7 6 3.9204 -2.2131 1.5350 8 6 4.0430 -3.4820 2.1038 9 6 5.1117 -3.7829 2.9242 10 6 6.0780 -2.8241 3.1922 11 7 7.1528 -3.1283 4.0172 12 6 5.9636 -1.5346 2.6195 13 6 6.9383 -0.5504 2.8838 14 1 7.4700 -0.5557 3.8238 15 6 7.2163 0.4330 1.9285 16 7 6.9752 0.2025 0.6627 17 14 7.9318 2.0749 2.4592 18 1 8.1337 2.9357 1.2661 19 1 6.9955 2.7423 3.3989 20 1 9.2355 1.8518 3.1343 21 6 4.8656 -1.2406 1.7907 22 6 2.0645 -0.7694 1.2221 23 1 2.7162 -0.1242 1.8112 24 6 0.8969 -1.2606 2.0804 25 1 -0.3633 -1.0276 0.0113 26 1 -0.3633 0.5237 0.8842 27 1 -0.3634 0.5039 -0.8957 28 1 2.3791 -0.0787 -2.0108 29 1 1.3187 -1.4667 -1.6073 30 1 4.1564 -0.8812 -0.5950 31 1 3.5074 -2.4169 -1.2525 32 1 3.2956 -4.2346 1.9003 33 1 5.1959 -4.7680 3.3590 34 1 7.8766 -2.4917 4.1253 35 1 7.1797 -3.9773 4.4855 36 1 6.6816 -0.6768 0.3772 37 1 4.7654 -0.2588 1.3519 38 1 1.2826 -1.8184 2.9337 39 1 0.3220 -0.4052 2.4352 40 1 0.2544 -1.9079 1.4835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380659157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:38 Heat of formation + Delta-G solvation = 14.154164 kcal Electronic energy + Delta-G solvation = -20157.287687 eV Core-core repulsion = 17356.683970 eV Total energy + Delta-G solvation = -2800.603717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.53872 -37.50430 -34.06261 -33.73795 -31.68155 -30.72474 -29.24817 -27.46809 -25.49919 -24.73322 -24.37874 -21.64354 -20.86068 -19.77738 -18.50949 -17.73093 -16.00697 -15.85507 -15.57420 -14.75019 -14.05222 -13.92585 -13.90530 -13.50466 -13.19542 -12.78886 -12.40003 -12.16983 -12.00770 -11.92677 -11.67588 -11.24716 -11.15616 -11.05588 -10.94233 -10.69435 -10.45033 -10.38878 -10.17565 -10.06766 -10.03823 -9.54774 -9.06177 -8.88192 -7.69933 -7.52161 -7.12256 -6.32117 -4.19854 2.83440 2.89504 3.18424 3.28521 3.38212 4.09191 4.63996 4.65372 4.99293 5.11755 5.16543 5.22883 5.51361 5.68073 5.72366 5.77319 5.86224 6.00952 6.06859 6.14676 6.21407 6.22667 6.29919 6.37697 6.45402 6.50810 6.54216 6.66252 6.76967 6.83335 7.08647 7.14322 7.51498 7.54655 7.56411 7.68257 7.95723 8.14313 8.20272 8.50543 8.56939 8.87651 9.04459 9.07512 10.21967 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.007970 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.223580 B = 3512.303914 C = 4538.822988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.039 3.961 6 N -0.471 5.471 7 C 0.056 3.944 8 C -0.163 4.163 9 C -0.177 4.177 10 C 0.122 3.878 11 N -0.883 5.883 12 C 0.060 3.940 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.041 3.959 16 N -0.812 5.812 17 Si 1.060 2.940 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.210 4.210 22 C 0.068 3.932 23 H 0.057 0.943 24 C -0.130 4.130 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.392 0.608 35 H 0.377 0.623 36 H 0.294 0.706 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 -0.369 -0.486 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.087 4.087 6 N -0.192 5.192 7 C -0.039 4.039 8 C -0.184 4.184 9 C -0.202 4.202 10 C 0.021 3.979 11 N -0.424 5.424 12 C 0.054 3.946 13 C -0.568 4.568 14 H 0.086 0.914 15 C -0.179 4.179 16 N -0.437 5.437 17 Si 0.885 3.115 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.232 4.232 22 C -0.039 4.039 23 H 0.075 0.925 24 C -0.188 4.188 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.221 0.779 35 H 0.203 0.797 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.871 0.683 -1.175 7.004 hybrid contribution 0.461 -0.943 0.882 1.371 sum -6.409 -0.259 -0.293 6.421 Atomic orbital electron populations 1.21906 0.94994 1.01893 1.00809 1.22010 0.95877 0.98951 0.95163 0.91217 1.22542 0.97766 0.98484 0.96743 1.23227 0.96469 0.98782 0.90271 1.62325 1.20355 1.35180 1.01330 1.18400 0.92024 0.94589 0.98896 1.19906 0.99502 0.95651 1.03349 1.19975 0.97557 0.97194 1.05448 1.18029 0.89605 0.93120 0.97195 1.41939 1.24329 1.21862 1.54224 1.17193 0.93360 0.89951 0.94102 1.20036 1.20965 1.11642 1.04141 0.91399 1.26735 0.94502 1.03706 0.92936 1.70475 1.30338 1.26605 1.16247 0.83712 0.76784 0.74607 0.76438 1.20111 1.20350 1.20475 1.21174 0.95945 0.98348 1.07746 1.22450 0.95321 0.91161 0.95008 0.92469 1.21778 0.97340 1.00288 0.99361 0.92011 0.92711 0.93471 0.91718 0.91236 0.92724 0.90873 0.88717 0.89130 0.77933 0.79725 0.89248 0.87939 0.92962 0.93071 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.92 37.16 0.29 -1.44 16 2 C -0.10 -1.55 3.59 -89.27 -0.32 -1.87 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.79 6.60 -24.87 -0.16 -1.96 16 5 C 0.04 0.74 6.42 -1.90 -0.01 0.73 16 6 N -0.47 -9.45 4.91 -159.73 -0.78 -10.23 16 7 C 0.06 1.29 4.87 -83.77 -0.41 0.88 16 8 C -0.16 -3.70 9.96 -39.14 -0.39 -4.09 16 9 C -0.18 -3.97 9.87 -39.47 -0.39 -4.36 16 10 C 0.12 2.90 6.79 -83.23 -0.56 2.34 16 11 N -0.88 -17.68 8.96 32.75 0.29 -17.39 16 12 C 0.06 1.55 5.20 -106.66 -0.55 0.99 16 13 C -0.54 -14.05 8.27 -37.91 -0.31 -14.36 16 14 H 0.07 1.72 7.01 -52.49 -0.37 1.35 16 15 C 0.04 1.05 4.92 -17.33 -0.09 0.96 16 16 N -0.81 -21.79 12.49 55.55 0.69 -21.09 16 17 Si 1.06 22.07 30.00 -169.99 -5.10 16.97 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.21 -5.29 5.80 -38.75 -0.22 -5.51 16 22 C 0.07 1.24 2.88 -66.65 -0.19 1.05 16 23 H 0.06 1.20 6.49 -51.93 -0.34 0.87 16 24 C -0.13 -2.08 8.36 37.16 0.31 -1.77 16 25 H 0.06 0.77 6.59 -51.93 -0.34 0.43 16 26 H 0.05 0.64 6.93 -51.93 -0.36 0.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 30 H 0.05 1.17 6.80 -51.93 -0.35 0.82 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.39 7.80 7.20 -40.82 -0.29 7.51 16 35 H 0.38 6.32 8.84 -40.82 -0.36 5.96 16 36 H 0.29 8.18 6.85 -40.82 -0.28 7.90 16 37 H 0.10 2.74 5.79 -52.48 -0.30 2.43 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.71 6.92 -51.93 -0.36 0.35 16 40 H 0.06 0.89 6.58 -51.93 -0.34 0.55 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -27.47 309.80 -9.10 -36.58 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -5.86 Total: 18.90 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.01 Total: -28.41 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.20 Total: -48.71 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.10 Total: 16.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.47 -9.10 -36.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.730 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds