Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.26988 * 2 1 4 4 C 1.54595 * 110.30919 * 237.91381 * 2 1 3 5 5 C 1.54936 * 102.92007 * 219.12553 * 4 2 1 6 6 N 1.48536 * 103.22841 * 37.41186 * 5 4 2 7 7 C 1.39857 * 110.99818 * 200.27852 * 6 5 4 8 8 C 1.39601 * 119.83870 * 239.87437 * 7 6 5 9 9 C 1.38050 * 120.54967 * 180.02562 * 8 7 6 10 10 C 1.38737 * 120.22077 * 359.97438 * 9 8 7 11 11 N 1.38861 * 120.16240 * 180.02562 * 10 9 8 12 12 C 1.41559 * 119.67570 * 359.97438 * 10 9 8 13 13 C 1.41026 * 120.26944 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99647 * 330.10793 * 13 12 10 15 15 C 1.39888 * 119.99795 * 150.11742 * 13 12 10 16 16 N 1.30906 * 119.99924 * 335.30941 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 155.31446 * 15 13 12 18 18 H 1.48500 * 109.46999 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46875 * 299.99551 * 17 15 13 20 20 H 1.48496 * 109.46974 * 59.99726 * 17 15 13 21 21 C 1.38005 * 119.83990 * 60.13641 * 7 6 5 22 22 C 1.47899 * 105.81687 * 320.79657 * 6 5 4 23 23 H 1.09002 * 109.91160 * 265.97138 * 22 6 5 24 24 C 1.53004 * 109.91463 * 144.68687 * 22 6 5 25 25 H 1.09002 * 109.46728 * 180.63265 * 1 2 3 26 26 H 1.08998 * 109.47146 * 300.63801 * 1 2 3 27 27 H 1.09005 * 109.47358 * 60.63652 * 1 2 3 28 28 H 1.08994 * 110.72533 * 100.76712 * 4 2 1 29 29 H 1.09000 * 110.87948 * 337.55158 * 4 2 1 30 30 H 1.08999 * 110.66661 * 278.97454 * 5 4 2 31 31 H 1.09000 * 110.80963 * 155.91503 * 5 4 2 32 32 H 1.08001 * 119.72609 * 0.02562 * 8 7 6 33 33 H 1.08005 * 119.89107 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00213 * 173.26000 * 11 10 9 35 35 H 0.97002 * 120.00214 * 353.25669 * 11 10 9 36 36 H 0.96999 * 119.99791 * 354.33972 * 16 15 13 37 37 H 1.08004 * 120.11502 * 359.97223 * 21 7 6 38 38 H 1.09001 * 109.47658 * 61.44803 * 24 22 6 39 39 H 1.09001 * 109.46762 * 181.44966 * 24 22 6 40 40 H 1.09002 * 109.46602 * 301.44333 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0666 -0.7701 -1.2284 5 6 3.2855 -1.5341 -0.6529 6 7 2.8313 -1.9242 0.7064 7 6 3.9204 -2.2131 1.5350 8 6 4.0430 -3.4820 2.1038 9 6 5.1117 -3.7829 2.9242 10 6 6.0780 -2.8241 3.1922 11 7 7.1528 -3.1283 4.0172 12 6 5.9636 -1.5346 2.6195 13 6 6.9383 -0.5504 2.8838 14 1 7.4700 -0.5557 3.8238 15 6 7.2163 0.4330 1.9285 16 7 6.9752 0.2025 0.6627 17 14 7.9318 2.0749 2.4592 18 1 8.1337 2.9357 1.2661 19 1 6.9955 2.7423 3.3989 20 1 9.2355 1.8518 3.1343 21 6 4.8656 -1.2406 1.7907 22 6 2.0645 -0.7694 1.2221 23 1 2.7162 -0.1242 1.8112 24 6 0.8969 -1.2606 2.0804 25 1 -0.3633 -1.0276 0.0113 26 1 -0.3633 0.5237 0.8842 27 1 -0.3634 0.5039 -0.8957 28 1 2.3791 -0.0787 -2.0108 29 1 1.3187 -1.4667 -1.6073 30 1 4.1564 -0.8812 -0.5950 31 1 3.5074 -2.4169 -1.2525 32 1 3.2956 -4.2346 1.9003 33 1 5.1959 -4.7680 3.3590 34 1 7.8766 -2.4917 4.1253 35 1 7.1797 -3.9773 4.4855 36 1 6.6816 -0.6768 0.3772 37 1 4.7654 -0.2588 1.3519 38 1 1.2826 -1.8184 2.9337 39 1 0.3220 -0.4052 2.4352 40 1 0.2544 -1.9079 1.4835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380659157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = -1.951644 kcal Electronic energy + Delta-G solvation = -20157.986087 eV Core-core repulsion = 17356.683970 eV Total energy + Delta-G solvation = -2801.302117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11064 -39.21564 -35.75468 -35.53093 -33.19677 -32.13615 -31.15963 -28.94138 -27.24600 -26.42486 -25.70808 -23.37460 -22.57376 -21.40856 -19.98121 -19.50571 -17.66512 -17.59956 -17.29691 -16.19519 -15.76171 -15.54506 -15.32436 -14.97038 -14.68970 -14.41781 -14.21194 -13.91156 -13.51460 -13.38137 -13.23920 -12.75260 -12.63682 -12.55096 -12.37093 -12.25777 -12.02074 -11.85013 -11.71230 -11.45733 -11.43381 -11.30755 -10.79624 -10.78277 -9.45120 -9.37183 -9.12199 -8.12451 -6.18417 0.95919 1.04163 1.47193 1.60240 1.74467 2.35109 2.75002 3.13479 3.50526 3.54042 3.69899 3.85965 3.98345 4.31270 4.38770 4.48035 4.50214 4.62228 4.69442 4.78594 4.80265 4.85664 4.91583 4.95820 5.00718 5.13409 5.16836 5.24115 5.26588 5.33128 5.37799 5.54828 5.63670 5.72056 5.81122 5.94668 6.02728 6.23064 6.32899 6.61525 6.79633 7.01055 7.19559 7.42103 8.19125 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.007970 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.223580 B = 3512.303914 C = 4538.822988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.061 0.939 4 C -0.106 4.106 5 C 0.035 3.965 6 N -0.467 5.467 7 C 0.048 3.952 8 C -0.161 4.161 9 C -0.181 4.181 10 C 0.114 3.886 11 N -0.871 5.871 12 C 0.022 3.978 13 C -0.562 4.562 14 H 0.069 0.931 15 C 0.001 3.999 16 N -0.836 5.836 17 Si 1.110 2.890 18 H -0.278 1.278 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.214 4.214 22 C 0.062 3.938 23 H 0.016 0.984 24 C -0.121 4.121 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.393 0.607 35 H 0.395 0.605 36 H 0.276 0.724 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -0.832 -0.302 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.092 4.092 6 N -0.188 5.188 7 C -0.047 4.047 8 C -0.182 4.182 9 C -0.205 4.205 10 C 0.011 3.989 11 N -0.413 5.413 12 C 0.017 3.983 13 C -0.592 4.592 14 H 0.087 0.913 15 C -0.212 4.212 16 N -0.461 5.461 17 Si 0.928 3.072 18 H -0.203 1.203 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.236 4.236 22 C -0.046 4.046 23 H 0.035 0.965 24 C -0.178 4.178 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.221 0.779 35 H 0.224 0.776 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.409 0.182 -0.963 8.466 hybrid contribution 0.886 -0.927 0.849 1.538 sum -7.523 -0.745 -0.115 7.561 Atomic orbital electron populations 1.21853 0.91952 1.02703 1.02301 1.22017 0.98294 0.97928 0.93555 0.92054 1.22532 0.96339 0.98635 0.96843 1.23253 0.96981 0.98721 0.90249 1.62461 1.19031 1.35967 1.01352 1.18611 0.92441 0.94472 0.99225 1.20261 0.99804 0.95623 1.02470 1.20322 0.96850 0.98264 1.05060 1.18205 0.90779 0.92636 0.97259 1.41831 1.23255 1.22702 1.53470 1.17560 0.93928 0.91380 0.95469 1.20207 1.21768 1.12866 1.04398 0.91268 1.28084 0.94043 1.06690 0.92415 1.70594 1.32795 1.25524 1.17182 0.83087 0.77179 0.70686 0.76198 1.20251 1.19624 1.18094 1.21070 0.96818 0.97806 1.07956 1.22555 0.95271 0.90421 0.96322 0.96537 1.21734 0.96582 1.01211 0.98308 0.91426 0.91842 0.91486 0.90401 0.89007 0.96470 0.90506 0.86738 0.85968 0.77863 0.77606 0.91286 0.90658 0.95002 0.90775 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.92 71.98 0.57 -2.26 16 2 C -0.10 -2.92 3.59 -9.92 -0.04 -2.96 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.11 -3.07 6.60 31.80 0.21 -2.86 16 5 C 0.03 1.33 6.42 86.65 0.56 1.89 16 6 N -0.47 -18.85 4.91 -659.27 -3.24 -22.09 16 7 C 0.05 2.26 4.87 38.13 0.19 2.44 16 8 C -0.16 -7.17 9.96 22.55 0.22 -6.95 16 9 C -0.18 -7.87 9.87 22.34 0.22 -7.65 16 10 C 0.11 5.43 6.79 38.97 0.26 5.69 16 11 N -0.87 -34.21 8.96 -50.31 -0.45 -34.66 16 12 C 0.02 1.19 5.20 -21.18 -0.11 1.08 16 13 C -0.56 -30.35 8.27 23.35 0.19 -30.16 16 14 H 0.07 3.58 7.01 -2.91 -0.02 3.56 16 15 C 0.00 0.06 4.92 85.23 0.42 0.48 16 16 N -0.84 -47.17 12.49 21.82 0.27 -46.90 16 17 Si 1.11 45.35 30.00 68.60 2.06 47.40 16 18 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 C -0.21 -11.34 5.80 22.81 0.13 -11.21 16 22 C 0.06 2.26 2.88 45.06 0.13 2.39 16 23 H 0.02 0.73 6.49 -2.39 -0.02 0.72 16 24 C -0.12 -3.68 8.36 71.98 0.60 -3.08 16 25 H 0.07 1.41 6.59 -2.39 -0.02 1.39 16 26 H 0.06 1.27 6.93 -2.39 -0.02 1.26 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 2.30 7.87 -2.39 -0.02 2.28 16 30 H 0.02 0.78 6.80 -2.39 -0.02 0.76 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.39 15.53 7.20 -92.71 -0.67 14.87 16 35 H 0.40 12.54 8.84 -92.71 -0.82 11.72 16 36 H 0.28 16.35 6.85 -92.71 -0.63 15.72 16 37 H 0.08 4.34 5.79 -2.91 -0.02 4.32 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.89 6.92 -2.39 -0.02 1.88 16 40 H 0.08 2.07 6.58 -2.39 -0.02 2.05 16 Total: -1.00 -62.05 309.80 1.91 -60.14 By element: Atomic # 1 Polarization: 49.53 SS G_CDS: -0.30 Total: 49.23 kcal Atomic # 6 Polarization: -56.70 SS G_CDS: 3.56 Total: -53.14 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.41 Total: -103.64 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.06 Total: 47.40 kcal Total: -62.05 1.91 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.190 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds