Wall clock time and date at job start Mon Mar 30 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.87474 * 2 1 4 4 C 1.55140 * 110.99158 * 236.15376 * 2 1 3 5 5 C 1.54319 * 103.01709 * 206.21406 * 4 2 1 6 6 N 1.47444 * 107.23416 * 22.28714 * 5 4 2 7 7 C 1.39844 * 111.00258 * 123.25641 * 6 5 4 8 8 C 1.39600 * 119.84261 * 216.94463 * 7 6 5 9 9 C 1.38052 * 120.55287 * 180.02562 * 8 7 6 10 10 C 1.38736 * 120.22197 * 359.97438 * 9 8 7 11 11 N 1.38861 * 120.16529 * 179.97438 * 10 9 8 12 12 C 1.41561 * 119.67215 * 0.02562 * 10 9 8 13 13 C 1.41030 * 120.26561 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99962 * 29.65966 * 13 12 10 15 15 C 1.39893 * 119.99749 * 209.65614 * 13 12 10 16 16 N 1.30894 * 120.00013 * 10.44175 * 15 13 12 17 17 Si 1.86795 * 119.99569 * 190.44250 * 15 13 12 18 18 H 1.48503 * 109.47335 * 60.00340 * 17 15 13 19 19 H 1.48503 * 109.46820 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47284 * 300.00072 * 17 15 13 21 21 C 1.38016 * 119.84097 * 36.96470 * 7 6 5 22 22 C 1.47842 * 108.56609 * 0.98516 * 6 5 4 23 23 H 1.09003 * 110.37307 * 94.73780 * 22 6 5 24 24 C 1.53003 * 110.37303 * 217.07725 * 22 6 5 25 25 H 1.09002 * 109.47289 * 182.39177 * 1 2 3 26 26 H 1.08998 * 109.47359 * 302.39352 * 1 2 3 27 27 H 1.09001 * 109.47682 * 62.39365 * 1 2 3 28 28 H 1.09001 * 110.70619 * 87.83733 * 4 2 1 29 29 H 1.08994 * 110.85726 * 324.66567 * 4 2 1 30 30 H 1.09005 * 109.88942 * 262.87534 * 5 4 2 31 31 H 1.09003 * 109.88881 * 141.68751 * 5 4 2 32 32 H 1.08000 * 119.72103 * 0.04350 * 8 7 6 33 33 H 1.08001 * 119.89200 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00476 * 174.98365 * 11 10 9 35 35 H 0.97000 * 120.00078 * 354.98755 * 11 10 9 36 36 H 0.97002 * 120.00303 * 184.99326 * 16 15 13 37 37 H 1.08001 * 120.11131 * 0.25583 * 21 7 6 38 38 H 1.09001 * 109.46892 * 58.54773 * 24 22 6 39 39 H 1.08999 * 109.47160 * 178.54873 * 24 22 6 40 40 H 1.08997 * 109.47279 * 298.54824 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4696 -1.2699 -0.7013 6 7 3.4321 -1.2411 0.7724 7 6 3.7470 -2.4946 1.3065 8 6 3.0892 -2.9469 2.4516 9 6 3.3889 -4.1816 2.9916 10 6 4.3498 -4.9882 2.3991 11 7 4.6507 -6.2297 2.9435 12 6 5.0227 -4.5389 1.2376 13 6 6.0020 -5.3484 0.6255 14 1 5.9327 -6.4240 0.6931 15 6 7.0630 -4.7580 -0.0693 16 7 7.2647 -3.4676 0.0175 17 14 8.1917 -5.8112 -1.1209 18 1 7.3974 -6.4817 -2.1814 19 1 9.2289 -4.9524 -1.7469 20 1 8.8467 -6.8369 -0.2699 21 6 4.7070 -3.2783 0.6990 22 6 2.0857 -0.8058 1.2006 23 1 1.4536 -1.6706 1.4024 24 6 2.1832 0.0852 2.4407 25 1 -0.3634 -1.0268 0.0429 26 1 -0.3634 0.5505 0.8677 27 1 -0.3634 0.4762 -0.9106 28 1 2.1878 -0.1686 -2.0808 29 1 1.4489 -1.6635 -1.4230 30 1 4.2420 -0.5928 -1.0660 31 1 3.6690 -2.2842 -1.0472 32 1 2.3393 -2.3259 2.9189 33 1 2.8731 -4.5212 3.8776 34 1 5.2689 -6.8222 2.4879 35 1 4.2426 -6.5046 3.7795 36 1 7.9542 -3.0472 -0.5199 37 1 5.2171 -2.9232 -0.1842 38 1 2.8055 0.9518 2.2173 39 1 1.1860 0.4183 2.7281 40 1 2.6277 -0.4798 3.2599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380659158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:41 Heat of formation + Delta-G solvation = 21.048692 kcal Electronic energy + Delta-G solvation = -19978.793193 eV Core-core repulsion = 17178.488445 eV Total energy + Delta-G solvation = -2800.304748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.58563 -37.21851 -33.86774 -33.47464 -31.62204 -30.99810 -29.28680 -27.93340 -25.79028 -24.77342 -23.84659 -21.51611 -20.82041 -19.44258 -19.03868 -17.18465 -15.95492 -15.66691 -15.21703 -14.95295 -14.67623 -13.70909 -13.56213 -13.19050 -13.17041 -12.67645 -12.51011 -12.14333 -12.10784 -11.88802 -11.44280 -11.35985 -11.28016 -11.16308 -10.97592 -10.84549 -10.59686 -10.36554 -10.23342 -10.09087 -9.85971 -9.33687 -9.27702 -9.06448 -7.90121 -7.22062 -6.56905 -5.82197 -4.09595 2.89520 3.13728 3.15887 3.22752 3.28366 4.05099 4.58924 4.82878 4.85006 4.98857 5.26997 5.34388 5.58857 5.68815 5.71187 5.77589 5.81371 5.89618 5.95618 6.01238 6.16168 6.23878 6.29482 6.32587 6.44401 6.51131 6.58310 6.65840 6.72173 7.02235 7.10950 7.28298 7.31963 7.63282 7.76933 7.80905 8.07307 8.35969 8.40044 8.69680 8.90552 8.94541 9.18487 9.25758 10.42310 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.006618 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.186325 B = 4229.925109 C = 5086.268789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.043 3.957 6 N -0.469 5.469 7 C 0.069 3.931 8 C -0.223 4.223 9 C -0.168 4.168 10 C 0.105 3.895 11 N -0.886 5.886 12 C 0.078 3.922 13 C -0.466 4.466 14 H 0.068 0.932 15 C 0.075 3.925 16 N -0.805 5.805 17 Si 0.902 3.098 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.156 4.156 22 C 0.073 3.927 23 H 0.064 0.936 24 C -0.136 4.136 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.375 0.625 36 H 0.276 0.724 37 H 0.127 0.873 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 4.032 -0.872 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.176 4.176 5 C -0.084 4.084 6 N -0.185 5.185 7 C -0.028 4.028 8 C -0.245 4.245 9 C -0.193 4.193 10 C 0.004 3.996 11 N -0.428 5.428 12 C 0.073 3.927 13 C -0.498 4.498 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.433 5.433 17 Si 0.727 3.273 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.179 4.179 22 C -0.035 4.035 23 H 0.082 0.918 24 C -0.194 4.194 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.200 0.800 36 H 0.087 0.913 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.758 4.686 -0.797 9.098 hybrid contribution 0.298 -1.231 -0.501 1.361 sum -7.460 3.455 -1.298 8.323 Atomic orbital electron populations 1.21709 0.94924 1.01764 1.01263 1.22349 0.95141 0.99435 0.95006 0.90276 1.22863 0.97384 0.99561 0.97742 1.22975 0.95975 1.02044 0.87409 1.60769 1.24896 1.25711 1.07121 1.18704 0.99103 0.88046 0.96982 1.20082 1.05721 0.97617 1.01072 1.19820 1.01646 0.96283 1.01503 1.18001 0.98880 0.87686 0.95025 1.41864 1.54917 1.18290 1.27745 1.17085 0.92329 0.93236 0.90053 1.19052 1.06033 0.93814 1.30856 0.91346 1.25711 0.97366 0.95188 0.95724 1.69824 1.29577 1.10651 1.33213 0.86486 0.79790 0.80466 0.80535 1.19297 1.20574 1.19385 1.20848 0.99332 0.95834 1.01904 1.22718 0.89359 0.96948 0.94447 0.91790 1.21765 1.00376 0.99662 0.97553 0.92684 0.92697 0.92835 0.91424 0.91623 0.91197 0.91056 0.88713 0.89624 0.78199 0.79967 0.91291 0.85584 0.92495 0.93205 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.30 37.15 0.35 -1.25 16 2 C -0.10 -1.40 3.05 -88.49 -0.27 -1.67 16 3 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 4 C -0.14 -2.02 6.41 -24.91 -0.16 -2.18 16 5 C 0.04 0.79 6.16 -2.83 -0.02 0.77 16 6 N -0.47 -9.58 4.93 -160.49 -0.79 -10.37 16 7 C 0.07 1.63 5.78 -83.78 -0.48 1.14 16 8 C -0.22 -5.05 8.34 -39.14 -0.33 -5.38 16 9 C -0.17 -3.85 9.87 -39.47 -0.39 -4.24 16 10 C 0.11 2.55 6.79 -83.23 -0.56 1.98 16 11 N -0.89 -18.04 8.97 32.75 0.29 -17.75 16 12 C 0.08 2.08 5.55 -106.66 -0.59 1.48 16 13 C -0.47 -12.24 8.45 -37.90 -0.32 -12.56 16 14 H 0.07 1.70 6.75 -52.49 -0.35 1.35 16 15 C 0.08 1.91 5.25 -17.33 -0.09 1.82 16 16 N -0.81 -21.40 10.87 55.55 0.60 -20.80 16 17 Si 0.90 19.09 29.58 -169.99 -5.03 14.06 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C -0.16 -4.07 7.17 -38.75 -0.28 -4.35 16 22 C 0.07 1.22 1.81 -66.19 -0.12 1.10 16 23 H 0.06 1.15 6.32 -51.93 -0.33 0.83 16 24 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 25 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.47 5.98 -51.93 -0.31 1.16 16 32 H 0.09 1.94 4.92 -52.49 -0.26 1.68 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.39 7.78 7.10 -40.82 -0.29 7.49 16 35 H 0.38 6.45 8.84 -40.82 -0.36 6.09 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.13 3.41 5.00 -52.49 -0.26 3.15 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.04 6.65 -51.93 -0.35 0.70 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -28.23 309.75 -9.04 -37.27 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -5.86 Total: 17.97 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.93 Total: -25.05 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.11 Total: -48.92 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.23 -9.04 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds