Wall clock time and date at job start Mon Mar 30 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.87474 * 2 1 4 4 C 1.55140 * 110.99158 * 236.15376 * 2 1 3 5 5 C 1.54319 * 103.01709 * 206.21406 * 4 2 1 6 6 N 1.47444 * 107.23416 * 22.28714 * 5 4 2 7 7 C 1.39844 * 111.00258 * 123.25641 * 6 5 4 8 8 C 1.39600 * 119.84261 * 216.94463 * 7 6 5 9 9 C 1.38052 * 120.55287 * 180.02562 * 8 7 6 10 10 C 1.38736 * 120.22197 * 359.97438 * 9 8 7 11 11 N 1.38861 * 120.16529 * 179.97438 * 10 9 8 12 12 C 1.41561 * 119.67215 * 0.02562 * 10 9 8 13 13 C 1.41030 * 120.26561 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99962 * 29.65966 * 13 12 10 15 15 C 1.39893 * 119.99749 * 209.65614 * 13 12 10 16 16 N 1.30894 * 120.00013 * 10.44175 * 15 13 12 17 17 Si 1.86795 * 119.99569 * 190.44250 * 15 13 12 18 18 H 1.48503 * 109.47335 * 60.00340 * 17 15 13 19 19 H 1.48503 * 109.46820 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47284 * 300.00072 * 17 15 13 21 21 C 1.38016 * 119.84097 * 36.96470 * 7 6 5 22 22 C 1.47842 * 108.56609 * 0.98516 * 6 5 4 23 23 H 1.09003 * 110.37307 * 94.73780 * 22 6 5 24 24 C 1.53003 * 110.37303 * 217.07725 * 22 6 5 25 25 H 1.09002 * 109.47289 * 182.39177 * 1 2 3 26 26 H 1.08998 * 109.47359 * 302.39352 * 1 2 3 27 27 H 1.09001 * 109.47682 * 62.39365 * 1 2 3 28 28 H 1.09001 * 110.70619 * 87.83733 * 4 2 1 29 29 H 1.08994 * 110.85726 * 324.66567 * 4 2 1 30 30 H 1.09005 * 109.88942 * 262.87534 * 5 4 2 31 31 H 1.09003 * 109.88881 * 141.68751 * 5 4 2 32 32 H 1.08000 * 119.72103 * 0.04350 * 8 7 6 33 33 H 1.08001 * 119.89200 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00476 * 174.98365 * 11 10 9 35 35 H 0.97000 * 120.00078 * 354.98755 * 11 10 9 36 36 H 0.97002 * 120.00303 * 184.99326 * 16 15 13 37 37 H 1.08001 * 120.11131 * 0.25583 * 21 7 6 38 38 H 1.09001 * 109.46892 * 58.54773 * 24 22 6 39 39 H 1.08999 * 109.47160 * 178.54873 * 24 22 6 40 40 H 1.08997 * 109.47279 * 298.54824 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4696 -1.2699 -0.7013 6 7 3.4321 -1.2411 0.7724 7 6 3.7470 -2.4946 1.3065 8 6 3.0892 -2.9469 2.4516 9 6 3.3889 -4.1816 2.9916 10 6 4.3498 -4.9882 2.3991 11 7 4.6507 -6.2297 2.9435 12 6 5.0227 -4.5389 1.2376 13 6 6.0020 -5.3484 0.6255 14 1 5.9327 -6.4240 0.6931 15 6 7.0630 -4.7580 -0.0693 16 7 7.2647 -3.4676 0.0175 17 14 8.1917 -5.8112 -1.1209 18 1 7.3974 -6.4817 -2.1814 19 1 9.2289 -4.9524 -1.7469 20 1 8.8467 -6.8369 -0.2699 21 6 4.7070 -3.2783 0.6990 22 6 2.0857 -0.8058 1.2006 23 1 1.4536 -1.6706 1.4024 24 6 2.1832 0.0852 2.4407 25 1 -0.3634 -1.0268 0.0429 26 1 -0.3634 0.5505 0.8677 27 1 -0.3634 0.4762 -0.9106 28 1 2.1878 -0.1686 -2.0808 29 1 1.4489 -1.6635 -1.4230 30 1 4.2420 -0.5928 -1.0660 31 1 3.6690 -2.2842 -1.0472 32 1 2.3393 -2.3259 2.9189 33 1 2.8731 -4.5212 3.8776 34 1 5.2689 -6.8222 2.4879 35 1 4.2426 -6.5046 3.7795 36 1 7.9542 -3.0472 -0.5199 37 1 5.2171 -2.9232 -0.1842 38 1 2.8055 0.9518 2.2173 39 1 1.1860 0.4183 2.7281 40 1 2.6277 -0.4798 3.2599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380659158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:41 Heat of formation + Delta-G solvation = 4.154144 kcal Electronic energy + Delta-G solvation = -19979.525796 eV Core-core repulsion = 17178.488445 eV Total energy + Delta-G solvation = -2801.037350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10684 -38.91443 -35.47095 -35.28726 -33.08823 -32.44008 -31.11562 -29.30551 -27.49404 -26.51526 -25.14083 -23.15392 -22.45482 -20.80913 -20.66817 -18.99396 -17.70970 -17.32932 -16.78772 -16.46228 -16.40722 -15.14920 -15.01690 -14.70636 -14.47091 -14.19843 -14.12573 -13.71208 -13.58547 -13.24551 -12.98595 -12.94486 -12.80365 -12.60125 -12.56117 -12.32770 -12.03239 -11.93259 -11.68306 -11.43684 -11.29587 -11.10462 -10.97977 -10.93710 -9.53752 -9.14231 -8.46895 -7.60017 -6.05270 1.08280 1.36337 1.39748 1.49898 1.55073 2.27076 2.86257 3.21013 3.66642 3.68583 3.74682 3.88634 4.08188 4.31583 4.49290 4.53407 4.57629 4.64747 4.75246 4.76823 4.83054 4.91847 4.94459 5.06344 5.15803 5.17723 5.21188 5.28865 5.30032 5.40229 5.44629 5.53657 5.56742 5.83912 5.96677 6.02242 6.21805 6.50102 6.60211 6.92014 7.00405 7.07482 7.36967 7.58971 8.53829 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.006618 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.186325 B = 4229.925109 C = 5086.268789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.128 4.128 5 C 0.040 3.960 6 N -0.484 5.484 7 C 0.063 3.937 8 C -0.222 4.222 9 C -0.175 4.175 10 C 0.094 3.906 11 N -0.875 5.875 12 C 0.040 3.960 13 C -0.492 4.492 14 H 0.073 0.927 15 C 0.031 3.969 16 N -0.842 5.842 17 Si 0.974 3.026 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.178 4.178 22 C 0.067 3.933 23 H 0.053 0.947 24 C -0.131 4.131 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.391 0.609 35 H 0.392 0.608 36 H 0.278 0.722 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 4.603 -0.721 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.167 4.167 5 C -0.086 4.086 6 N -0.200 5.200 7 C -0.035 4.035 8 C -0.244 4.244 9 C -0.199 4.199 10 C -0.009 4.009 11 N -0.418 5.418 12 C 0.035 3.965 13 C -0.524 4.524 14 H 0.091 0.909 15 C -0.181 4.181 16 N -0.471 5.471 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.201 4.201 22 C -0.040 4.040 23 H 0.071 0.929 24 C -0.189 4.189 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.220 0.780 35 H 0.220 0.780 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.327 5.245 -0.622 10.719 hybrid contribution 0.705 -1.343 -0.479 1.590 sum -8.622 3.902 -1.101 9.528 Atomic orbital electron populations 1.21683 0.92484 1.01956 1.02995 1.22340 0.96996 0.98981 0.92600 0.89365 1.22831 0.94632 1.00128 0.99069 1.22929 0.98569 1.00366 0.86774 1.60725 1.27325 1.23893 1.08008 1.18887 0.98444 0.88900 0.97241 1.20424 1.05572 0.97866 1.00516 1.20179 1.01338 0.96175 1.02257 1.18173 0.98967 0.89034 0.94727 1.41741 1.54772 1.17051 1.28276 1.17482 0.93506 0.93997 0.91526 1.19314 1.06762 0.94100 1.32201 0.90902 1.26547 0.98616 0.96292 0.96618 1.69933 1.30510 1.12373 1.34276 0.85374 0.77624 0.78655 0.78686 1.18860 1.20137 1.18569 1.20812 1.00550 0.96720 1.02025 1.22875 0.87355 0.97242 0.96487 0.92893 1.21740 1.02165 0.98936 0.96019 0.93250 0.91205 0.90943 0.88931 0.91639 0.91646 0.94072 0.86410 0.86787 0.78033 0.77992 0.91164 0.87714 0.92519 0.89961 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.30 71.98 0.67 -1.91 16 2 C -0.09 -2.28 3.05 -9.41 -0.03 -2.31 16 3 H 0.09 2.11 8.06 -2.38 -0.02 2.09 16 4 C -0.13 -3.60 6.41 31.78 0.20 -3.40 16 5 C 0.04 1.53 6.16 86.65 0.53 2.06 16 6 N -0.48 -19.95 4.93 -661.66 -3.26 -23.21 16 7 C 0.06 3.07 5.78 38.14 0.22 3.29 16 8 C -0.22 -9.98 8.34 22.55 0.19 -9.79 16 9 C -0.18 -7.89 9.87 22.34 0.22 -7.66 16 10 C 0.09 4.55 6.79 38.97 0.26 4.82 16 11 N -0.88 -35.23 8.97 -50.31 -0.45 -35.68 16 12 C 0.04 2.20 5.55 -21.18 -0.12 2.08 16 13 C -0.49 -26.67 8.45 23.36 0.20 -26.47 16 14 H 0.07 3.72 6.75 -2.91 -0.02 3.70 16 15 C 0.03 1.60 5.25 85.23 0.45 2.05 16 16 N -0.84 -46.69 10.87 21.82 0.24 -46.46 16 17 Si 0.97 40.02 29.58 68.60 2.03 42.05 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.18 -9.72 7.17 22.81 0.16 -9.56 16 22 C 0.07 2.16 1.81 45.39 0.08 2.24 16 23 H 0.05 1.83 6.32 -2.39 -0.02 1.82 16 24 C -0.13 -3.73 9.19 71.98 0.66 -3.07 16 25 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 30 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.04 1.80 5.98 -2.39 -0.01 1.79 16 32 H 0.12 4.67 4.92 -2.91 -0.01 4.65 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.39 15.58 7.10 -92.71 -0.66 14.93 16 35 H 0.39 12.93 8.84 -92.71 -0.82 12.11 16 36 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 37 H 0.11 6.07 5.00 -2.91 -0.01 6.05 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.38 6.65 -2.39 -0.02 1.36 16 Total: -1.00 -63.12 309.75 1.84 -61.28 By element: Atomic # 1 Polarization: 50.07 SS G_CDS: -0.42 Total: 49.65 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.71 Total: -47.63 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.48 Total: -105.36 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -63.12 1.84 -61.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.437 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds